RNA id: XM_007244351.3


Basic Information

Item Value
RNA id XM_007244351.3
length 2429
RNA type mRNA
GC content 0.46
exon number 12
gene id LOC103028433
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 22720512 ~ 22734099 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGAGAAGCAAGGCTGTGAGGAGGAGAGAAGAGCTCTGAGctgctgaggctgaggctgacaCTGAGACTGAGCTGAGTGAGGGAGAACAGTTCTGGGAAGTTTTCTGAGCAGAGGACACCTGACGGCACTGAGGAGGGGATTTAGTAATAGCAGTCATGTTTTGTGCATTTCCTGGCCCTGGGTCAGCCAGCAACTCTATGATGTATCACTATGGCAATGGAAAAGGGGTGTACTCCCCATCTCCAAATGCAGAGGAGCTGAAAAGGGATTCTGCACCCTACTCGTCATTCAGACTGCCCAACACAAACTTCACAAACACATATTTTGATGGGCCAAACAGCTCCACAGACCCCTGGAGCTCATCCAGTGGGATCAGCCCATCAGGCCATGGAGGCATGCTGGGATCATCACCATCCAGCCAATCACCGCCTGGGAACTACTGCAACCTTCCAACACACGATCGTCTGAACATACTGCCAAATTCAGCAGTACCTGAAGTCAACAAGCATCTCCCACCAATGTCTACATTTCACAGAGGTTCCGACAGTACTGCACTTTTTGTGCCTGCATCACCACATTCTGCAGCTCCAAATGCCACAGACAGGTCCATGGGTGGTCAAGGGCATCATGTTGGAGGCTCACACACTGGAGACGCTCTTGGAAAAGCCCTGGCTTCTATTTATTCCCCTGATCACACCAGTAGCAGTTTTCCATCCAGTTCCTCCACTCCGGGGAGATCTCCATCACCTCTGGCTGCTTCTACAGTCTCAGCAGgaGCCAACCAGTGGTCTCGATCAGCTGGTCATCCATCGCTGCCGTCCAACTACGATAACTCCCTGCAGTCACTGATTGAGGACCGATTGGACAGACTAGACGATGCCATTCATGTTCTACGAAACCACGCAGTGGGAGGGACAAATATCTCCTTATCCAATGACCTACAATGCCTAATCGAACAGACACAACACGGATCAGTCACAATGAGGTCTAACTACCCCATCTCAGGACTAGTTACAAATGGATTACCAACAGATATGTCAGCTGACCCGGGTGAGGCTGCTCATTTGGCCATGCACTCCTCAGCAGCTCCTTCATCTTCTGATCTGACCAACCACGTAGACAGTTTCAGAGCTCTGGCTGCAGGGCTGCTCTCTAACTTGTCTCCAGGCCCTCTGGAGGTGAAAGTGGAGCCATCCGATGGGGAGGAATATAGACTGCACCAGGCACACTCCGTCCACCCGTCTCATTCATCTCATTCCAGCTGTCTGTCTCACCTCTCCTCTGATGGCATGCACTCTGATGCAGAGAGTGACACAAGAGATCCAGAAATGCACAGTGTTGATACTGCCACAAGGAACAGCAGCATCCACGAGGAAGAGGAGCTCTCTCCAGAGCAGAAGGCTGAGCGGGAGAAGGATAGAAGGATGGCGAATAACGCCCGCGAGCGTCTGCGTGTGAGGGACATCAACGAGGCGTTTAAAGAGCTGGGCCGCATGTGCCAGCTGCATCTGAAGAGCGATAAACCCCAGACCAAACTGCTCATCCTCCACCAAGCCGTCACTGTCATCCTCAGCCTAGAGCAGCAAGTCCGGGaGCGTAACCTGAACCCTAAGGCTGCATGTctgaggaggagagaggaggagaaggtgTCAGCCCTGACGTTGGACCCCCACTCCTTGCATACAGTTATCCACACAACACTGTCTGACCAAATCAACAGCCTGTCTGGACATCTCTGACAGCCATGTggcatgtgtatgtgtgggagtatgtgtgtgactgtgtatgtgtgtgtgtatctgggtTAATTCCATAAATGGCAGTATTTTATCATAACCAGATATGTTTTACCAAATGTACACTCCATTTTTATAGCACTTTCCTAACTATTAGCTATATAATTGACTttgaataaaaaattacatttttcccTAATGTACACTGTTTATATGTACACAGTTACCTGACAAACCAGTTTTTGTTCTCACTTTCAAGTTGCTGATGGAAAACAACACACAGTCCAGAGAGTCTTTAGTATTCTCCATTGGCAATCCCACTCTATGAGATAAGGAAACGAAGAACATTCAAATATTATTCAAATCCAGCCATTGTATACCATTGTTGATATAGTGGACGTCAACGGTGTAGTCGTGTTTGTAAAACTGGTTTTACAGTACTTTTTCTTTGTAAACCTAGGTCTTCGACAATGATCAATTTctgaaaaaagtgaattttcatGTAACTGATCATATCAATAACATGAGTAGTTTGTCTCTTACATAAGTGATGACATTATGGAATATTGAACAAAACGAtattttgttgtgattttttacaaatacattttttacatgtaaaattaaaaaactaatatttcGCTGTATAACTTTCTTCTTTCATAGACTTttgaaataaagtatataaaaaga

Function

GO: NA

KEGG:

id description
K15603 TCF4_12; transcription factor 4/12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102008 lncRNA downstream 103485 22585926 ~ 22617027 (-) True G75686
TU101908 lncRNA downstream 713097 22005429 ~ 22007415 (-) True G75623
TU101909 lncRNA downstream 713097 22006015 ~ 22007415 (-) False G75623
XR_002650262.1 lncRNA downstream 718228 22001490 ~ 22002284 (-) True LOC111193108
TU101901 lncRNA downstream 749424 21968705 ~ 21971088 (-) True G75618
TU102106 lncRNA upstream 5405 22739504 ~ 22739793 (-) True G75771
TU102109 lncRNA upstream 17221 22751320 ~ 22751545 (-) True G75774
TU102113 lncRNA upstream 30826 22764925 ~ 22824298 (-) True G75777
TU102120 lncRNA upstream 40070 22774169 ~ 22780962 (-) True G75780
TU102148 lncRNA upstream 227183 22961282 ~ 22961566 (-) True G75796
XM_015604574.2 mRNA downstream 1232 22702910 ~ 22719280 (-) False LOC103028124
XM_007244350.3 mRNA downstream 1233 22702910 ~ 22719279 (-) True LOC103028124
XM_007244349.3 mRNA downstream 17671 22695409 ~ 22702841 (-) True LOC103027797
XM_022672350.1 mRNA downstream 33043 22667158 ~ 22687469 (-) False LOC103027474
XM_007244348.3 mRNA downstream 33044 22666823 ~ 22687468 (-) True LOC103027474
XM_022672353.1 mRNA upstream 90474 22824573 ~ 22830793 (-) True LOC103030430
XM_007244358.3 mRNA upstream 90474 22824573 ~ 22830714 (-) False LOC103030430
XM_022672360.1 mRNA upstream 98665 22832764 ~ 22950022 (-) False LOC103029587
XM_022672362.1 mRNA upstream 98665 22832764 ~ 22929084 (-) False LOC103029587
XM_022672358.1 mRNA upstream 98665 22832764 ~ 22923268 (-) False LOC103029587
XR_002650263.1 other downstream 206788 22456331 ~ 22513724 (-) False LOC103024007
TU101746 other downstream 1447495 21270129 ~ 21273017 (-) True LOC111193105
trnat-agu_2 other downstream 1824336 20896103 ~ 20896176 (-) True trnat-agu_2
TU101364 other downstream 2620262 20087418 ~ 20100250 (-) False hsd17b12
TU101358 other downstream 2688485 20027162 ~ 20032027 (-) True G75207
XR_002650267.1 other upstream 1450470 24184569 ~ 24188202 (-) True LOC111193112
TU102973 other upstream 2180199 24914298 ~ 24920365 (-) True G76377
XR_002650272.1 other upstream 2214945 24949044 ~ 24950022 (-) True LOC107197705
TU103036 other upstream 2450110 25184209 ~ 25184469 (-) True G76424
XR_002650273.1 other upstream 2554751 25288850 ~ 25301768 (-) False rab3il1

Expression Profile