RNA id: XM_007246487.3


Basic Information

Item Value
RNA id XM_007246487.3
length 6657
RNA type mRNA
GC content 0.46
exon number 13
gene id otud7a
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 16618151 ~ 16738665 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTGCTGCATCGCTGAATGGCACGGGGATGAGGAGCGGTAGCGGCGGCTAGACGGAGGCTGTTTTGTTATCCGGTTTTAAAGCCATATTTCGGGAAGGACGGATTTGTTTGGCTGGTGTTCGGCTGAAGAGCGAGGGATAGCGGATGACGGATGAAAGGTATGGCCGTGACCCCAAGTCTTCCTTGTCTCTCCTCCGTCTTGTAGAAGTCATGGATTAAAgaaagggagtgtgtgtgtgtgtgtgtgtgtgagaaagagagagtgtgtgactgtgtgtgcaTGAGCTCCTGGACATAACCATGGTGGTGAGATGGCAGCTGAAGAACTCTCAGTGAGGACACAGAAAATGAGAACGTGACGCTCTGGCTACCACAAAGGCAACTGCTGCAGGCTGGGCAGCACAGCCACATGATCACATGACTCTGGACATGGACGCGGTCCTGTCAGACTTTGTTCGGTCCACAGGGGCCGAACCGGGTCTGGCACGAGACCTGCTGGAAGGTAAAAACTGGGACCTGAGCGCTGCTCTGAGTGACTATGAGCAGTTACGGCAGGTCCACACTGCCAACCTGCCCCAGGTGTTTAACGAGGGCCGTTACTACAAGCAGCCAGAGCGCAGCGGCACCCCCCAGCACATCAACAAGCTGGAACAATGCCTGCAGAGGCAGGAGGAGAACACTCAGGAGAAGCGTCTCTCTCGGGGCATCTCCCATGCCAGCTCTGCCATCATGTCGCTGGCGCGGATGCATGTGACGGGCGAGTGTGCCAGGGAACAGTTCCCTCTAGAGATGCCCATCTACACCTTCCAGCTGCCCGACCTGAGCGTGTACAGCGAGGACTTCCGCAGCTTCATCGAGCGAGACCTAATTGAGCAATCCACTATGGTGGCCCTGGAGCAGGCGGGTCGTCTGAACTGGTGGTCCACCATGTGTACCAGCTGTAAGAAGCTCCTGCCATTAGCAACAACTGGTGATGGCAACTGCCTACTGCATGCTGCTTCCTTAGgAATGTGGGGCTTCCATGACAGAGACCTGGTGCTGAGGAAGAGCTTGTATGCCATGATGAAGAGTGGGGCTGAAAGAGAGGCCCTAAAGAGGAGGTGGAGATGGCAACAGACGCAGCAAAACAAAGAGtctGGGTTGGTGTACACAGAGgaggagtgggagagagagtggAACGAGTTACTGAAGTTGGCCTCCAGCGAGCCTCGCATACACTTAAGCAAGAACGGCAACACCAGTGGAGGTGTGGATAACTCAGAAGATCCTGTGTATGAGAGTCTGGAGGAGTTCCATGTGTTTGTGTTGGCACATGTGCTGAGGCGGCCTATCGTGGTTGTTGCTGATACCATGCTCCGAGACTCTGGAGGAGAAGCATTTGCACCTATACCGTTTGGTGGGCTCTATCTGCCTCTGGAGGTTCCCCCTAACCGCTGCCACTGCTCCCCGCTGGTTCTGGCCTACGACCAGGCCCACTTCTCTGCTCTGGTGTCCATGGAGCAGAGAGATcagcagagagagcaagCCGTTATTCCCCTGACAGACTCCGAGCACAAGCTGCTAGCGCTGCACTTTGCGGTTGATCCGGGCAGAGATTGGGAGTGGGGGAGGGACGACAATGACAACACCAAGCTGGCCAAtcttATCCTATCACTGGAAGCGAAGCTAAACCTCTTGCACAGTTATATGAATGTAACCTGGATTCGAATACCATCAGAGACAAGGGCTCCTCTTGCCCAGCCAGAGTCACCCACTGCTTCAGCCGGTGAAGATGTGCAGTCTCTAGCCGAATCCATGGACTCAGACCGTGAGTCTGTCTGCAGTAATTCCAACGTCAATAACGGCAAATCCGGCAAAGAGAAGGACAAGGAGAAGCAGCGCAAGGACAAAGACAAAGTTCGTGCCGACTCTGTGGCCAACAAGCTGGGAAGCTTCAGTAAGACTCTAGGCATCAAGCTCAAAAAGAACATGGGTGGCCTGGGTGGACTGGTACATGGCAAAATGAGCAAGTCTGGTTCGACGAACGGGCGCACTGTGGAGAACGGTGAGCAGAAGCCTAAGAAAAAGGACTCCAAAACACGCAAAGGGAGCAAAGAGGAGTCGGGCCAGTCCGCCAGCACCTCCTCATCTGAGAAAGCCACTAGTCCTTCTCCTACGGACAGAGCTTCAGGCAGCTCTCCTGGGGAGAGACAGCCAGGCTCAGGCAAAAACCCAGGGGACCGCTCACTGGACAACTGGAAGTACAGCACAGATGTCAAGCTGAGTCTGAACATCTTGCGGGCAGCCATGCAGGGCGAGCGCAAGTTTATCTTTGCTGGCCTCCTTCTAACCAGCCACAGACACCAATTCCATGAGGAGATGATCAGCTATTACCTGACCAGTGCACAGGAGAGGTTTAGTGCTGAGCAGGAGCAGAAAAGGAAAGCTGAGGCCGAAAAGAAACCCCAGACCAACGGGGTGGCCCTTAAGAAGCCTGAACTGGAGAGCGTCTTCCAGAGAGAGTGCTCGGATAGTTCCCCTCCTGAGAGTTGCTCGCCGGTCTTGCATCCCAGCCATATCCCGCAGCTGAGGACACAAGGTAGAAACAGTCCGATCCTCGCTGCTTCTCCTATCCCCATCCCAAGTCCTACCCCATCTTCAGTTCCTACAGCTTCCTCCATGTCTCCCGTTCCCTTCTCCTCCCCCAGTAATGGTGCTAAGAGACCTGGGCCTGTGCCGGTGTCAGCCCACTATAGCCATACCCCACCCATCCAGCGGCACAGCGTTATCCACCTAAGGGACGTGAACACACAGTCATCCAGCTACCAGGATGAGCCCTATAAGCCGACGATAGGGATGCTAAAGACCTGCGCCACCTATCCTCAGCAGAACCGCTCGCTGTCCTCCCAAAGCTACAGCCCGGCCCGCATGTCCGGGGTCCGCACCATCAACACCGGAGATTCCCTACCATACAACATGCCAGGCGAGCACAAGTCCCACACCTATACCAACGGCTTTGATGCAGGCGACATCCAGGACTGTCTGGAGTTTGCAGACGAGGAACCGGCACCCCATGCCTGGTTGGGACACGACAAGGCCAAGGTCCGGAGCGGAACCTGCCCCATGTACTGCTTCCAGCAGAAGCGCTGCAAGAGGGAGAACTGCTCCTTCTATGGGCGCCCTGAGACCGAGAACTACTGCTCCTACTGCTACAGAGAGGAGCTAAAACGCAGGGAAAGAGAGGGCAAAATGCACCGGCCTGGATAGCCCCCGcccgcaaacacacacacacacctatacatatacacacatacacattcaccAACCAGTGTGTGCAAAGCAGGCTCCAATGAAGAACAACAACACCATCACCCTCTGCACTCTGCGAGTAATATGAAAACACTGGCAAAACAGTTTCCTACTCTATTTAAAGAATGGTCTCCTTGCGTTCTTGTTACCTTTCTCTAAATAGCAAAAGGATTCTGGGACTCTTACTTTACGAGAAAAGGAAGTACAACCGAAATCAGTTTACAGCTTTGGCCAGAGATTGTgttgtcatttattttttgtcagtttGCATTTTGTCTGGTTGAATTTGAATCTTTTACTTGTTCTAGAGTAAAAGCTCATGTCTGCGCATTTTGCTCAGTCTGTAAAATAGAATTCCTTGTACTATCTGAAAGAGATGGAAAAGTGTACGTCAGACTCCTCTCAGCTAACCCAAAGCTGAAGGGAAACTCCGTTCAGAGGTCATTTGAATGCAATACTTCACACAATAGCTCTTTGAAATCTCAATATCAAATAACGTCTATCTGCTGTGCAttgcaaataattaaatacGGGAGGGACATGCACTGCTAAGCATGggaatttttttaaaagcaataaGTTTGGTAATGACCGCAACCCCTCCCTCTTTTTTATCTATGCATCCATAATGTCAGCCATAGTATATCGTCCGTTGTGTGGATTTGAGTGTGATTCGATCTTGCCCTGATGTAAGAGGACTTGGGGTGAAACATTTCATTTGTGGCAAAGTGTGCTGAATGGTATCGTGGAATTAATACTGTACTTTTAACATGCTAATCAGTCCTCTGTGTACGTGGGTTTGCATTCCATTGCACCTGTCTTCTGTAGACTGTGTCTGATGCAGTACAGAGCCATTTATTGCTAGCTgcattttttgcaatatatcaCATTCATGCTAGCAAGCGGTGAGCTTATGTAAAATAGACCTACTCGTGACAACTTTACACAGCGCTCTTGCAGTAACAAGAGAATGGAATACAAACCTTTATACACTTGAACTGTAGACAAACAGTGAAAAGCAAAATGGAACCCTGTCTGAGTGTTGTTTGTCATTATTGGTTGCCCATTGGTTACACTGTGGTGTGGTGTGATGTATGTGATAGCTGTTCCTCATCACACATTCTGTAACCCATAAGCACTGCCATAACAGTCTCTCATAGTCAGATCTGCCTAGTTTGCCCTAAGAAAAGGTTTGTGCCAAAAAAGACAGTTCTCCCCTATTTAATATCCTCAGGTATTGTGTTAAATATGTTGGGATTCTGACAAGTCATTTACATTTCTGACCTCACAGCAATGTACATTTGATTATGATTGTTTAGGAAACTATTTTCTGCATCATGAATGACCAAATTTAAACACAATGAATGCACAAAAATGACTGGAGGAATTATTACATTGTAGCATAATGTAGACAACACATACAATACaccacacatttatttattacttttgcaTTTAGAATAGAATGAAAAATTGGTTTTGGTAAATGCATTTGTATTGAAAACTATTATTTGTTTAAGTTCTAATCAATGAATGCATTTGATTTGGCACCTTCAGTTGCATTCTATACAAGAATGTGTGTCCAAGGTTTTGAAAGATGAGAGCAACACATCTGAGTACTTTAGTGTAACGTTTATCAGTTTAGTTTTCTGGCTGTTTTGAATaaaaatgattgattgattataaaatatttgtttttccatttattataggaaaaaaatattttcatcagttttttttattttgtttctttttcatttctgccCCTCACAATCTGAACTTCAGGAAAAAATGCATCTTGCAACAAAAACTTGTTAGATTATGATGTCAGATGTTTGTAACAAGATACAAACATCAGAAATTTGCATTTTCACTGTAATTCAGATTGTGATGGGCATAAAtgaaaaaagtagaaaattatatatattattatacatctCTTCTTTACTATACTGAATAAAGAACAATTTTCTGTTTTCAAATTTAACCCCAAATATTCAGACAATTAAACTGATAAATGTATATTCTTTGCCCTCCTGTAATTTGCCTCCTCCAAAGTTTGGGTGAAAGCAGCACTTCAGATTTGACTAAAtcttatttttgccattttgggCCAAAATCTTATGACTAGTCAGAAAAGCATAATTATATAGGAAACATATGAAAGAAATAGGGGTTAATAGTTTCAGTTTGTCTCATCAAAGTGGGaaaaaagctgtttaaaaaCTTATTGTTAGACATGCAAAATTTGATGCAGCAGCTTTTATCCACGGCCTCACTTTGTGTTTAGCTTTTAGATTTAAGGCATTCGGACAGAGTTTGTTTTCACCTAAATGGGGGATGTGGTCATCCAGATGACAAGGAAGTGAGATATGATTGCTCTCATCTATTTGCaatcaaaattgacaaatttaaatgtaagcCATTAAAAACATGCCTTTTCAACATTCAGGTCTGGACTAATGGCAGCAAAGGTGTTCTGTTTCATTGCTTCTAACAGCAAATATACTCCCTCGCCACTAGATGTGCCGATGTTTTGTAATTCTGGAGCCAAGCATACAATAGGCTATAtcttcaaatgtttgtggacacctcttgTAATGAATTagtaaatgcattcagctactttaagtagGTTCCACACTTTACTGACACTTTGCTGGCACCATATTGGCCAGGCGGGGGCTAGAGGGGTATGAGGCCCATCTACTGTGTTGTTCCTTCCAAAATCTTTAGTATCATTTGAattgcagttaaaaaaaaattggtaataCTCCAAAGACTAGCAGAACAAAAGCAatcaacaaaattaaacaaaaacaggataagCAGGGAATGAGGTGTTGCCATACATTTGTTCATATATTGTATGCATTGTGCTTAACATGGTGGGTCTGTGGCTGATCCCAGTCATGCTTTGATTCCTGTGATTCACTGTGTGTAGCCTGGGCAAAGCAAAGGCCTCTATAAGTGCTCCAGGCCTCCAGCAGGGTCATGCCGGCCGGAGCACTgctcgctgctgctgctgctgctgggtgtGTGTCGTAAGCCCAGATAACCCTTGTGCGGTCTCacgctgagtgtgtgtgcgtgtctctCCTGGCCAAGGATGTCCTCTGCTTCTTGTGTTTTCTTCCCAAGGTTCTACTGCGCCACCCGTCGCGTCTCCTTCctcccttcctcctcctcctcttcctcctttctATGTGACAAGATCATGGACTCACACTGTCTTAGAattgtaaaatatgattttgtaTTCATTTGACAGTTTTACActactttaaattattaatttgcaCATTAGGTACCGACGTAAACAGtaggaggaaaagagaaaagaacaaaacaagattagtttattgttaa

Function

GO: NA

KEGG:

id description
K11860 OTUD7A_B; OTU domain-containing protein 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100092 lncRNA downstream 109689 16508004 ~ 16508462 (-) True G74265
TU100056 lncRNA downstream 147828 16467603 ~ 16470323 (-) False LOC103041134
TU100025 lncRNA downstream 296498 16316945 ~ 16321653 (-) True G74211
TU100015 lncRNA downstream 326132 16286228 ~ 16292019 (-) True G74205
TU100012 lncRNA downstream 365399 16252492 ~ 16252752 (-) True G74203
TU100126 lncRNA upstream 4395 16743060 ~ 16747522 (-) True G74295
TU100143 lncRNA upstream 31777 16770442 ~ 16786039 (-) True G74306
TU100220 lncRNA upstream 58380 16797045 ~ 16801051 (-) True G74368
TU100263 lncRNA upstream 516252 17254917 ~ 17255289 (-) True G74407
TU100308 lncRNA upstream 1066670 17805335 ~ 17813965 (-) True G74447
XM_022672203.1 mRNA downstream 90064 16489647 ~ 16528087 (-) False LOC103042575
XM_015605134.2 mRNA downstream 95410 16489647 ~ 16522741 (-) True LOC103042575
XM_022672204.1 mRNA downstream 105545 16489647 ~ 16512606 (-) False LOC103042575
XM_007246480.3 mRNA downstream 147846 16467089 ~ 16470305 (-) True LOC103041134
XM_015605124.2 mRNA downstream 160397 16447496 ~ 16457754 (-) True acsbg1
XM_007246489.3 mRNA upstream 76251 16814916 ~ 16829981 (-) True bnip2
XM_007246490.3 mRNA upstream 76251 16814916 ~ 16829980 (-) False bnip2
XM_022672207.1 mRNA upstream 78977 16817642 ~ 16829981 (-) False bnip2
XM_007246492.3 mRNA upstream 219909 16958574 ~ 16965560 (-) True LOC103044821
XM_022672209.1 mRNA upstream 228117 16966782 ~ 16988490 (-) True ice2
XR_002650248.1 other downstream 839728 15761764 ~ 15778423 (-) False LOC103046265
TU99163 other downstream 2072713 14542209 ~ 14545438 (-) False LOC103025073
TU98709 other downstream 3996795 12610834 ~ 12621356 (-) True G73172
TU98667 other downstream 4053185 12564348 ~ 12564966 (-) False fbxo31
TU100463 other upstream 1138361 17877026 ~ 17883786 (-) False nrg4
TU100498 other upstream 1244082 17982747 ~ 18029747 (-) True G74591
TU100745 other upstream 2200509 18939174 ~ 18940464 (-) True G74791
TU100809 other upstream 2332273 19070938 ~ 19072888 (-) True G74838
TU101215 other upstream 3121029 19859694 ~ 19865982 (-) True G75100

Expression Profile