RNA id: XM_022672210.1


Basic Information

Item Value
RNA id XM_022672210.1
length 7578
RNA type mRNA
GC content 0.40
exon number 10
gene id LOC103045127
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 16992911 ~ 17425461 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCACGTCACAGTCACatggagtgtggtgtggtggcGCGAGGGAGCCGGAGCGGCAGAGCTGTGCTGGCCAGCTGCTGCTCGAACAGCAGGGGGAGGCTTTCGCTCGCGCCGCGCCTGCTGCTCGCCTATGGACCGCCGAGCTTAATGATGTATTTTGTGATTTCAGCGATGAAAGCTCAAATTGAAATTATTCCCTGCAAGATCTGTGGAGACAAATCATCAGGCATCCATTACGGCGTGATAACATGTGAGGGCTGTAAGGGTTTCTTCAGGAGGAGTCAGCAGAGCAATGCTGCGTACTCGTGCCCGCGTCAGAAGAACTGCCTGATCGACCGCACCAGCCGAAACCGCTGCCAGCACTGCAGGCTGCAGAAGTGTCTGGCCGTGGGCATGTCACGGGACGCGGTGAAGTTCGGTCGCATGTCCAAGAAGCAGCGGGACAGTCTGTATGCAGAGGTGCAGAAGCACCGGCTCCAGCAGCAACAGAGGGACCACCAGCAGCAGCCCGGTGAGGCCGAGCCGCTCACCCCCACCTATGGGCTGTCAGCCAACGGCCTGACCGAGCTGCACGACGAGTTGAGCGGCTACATGGACGGACACACGCCGGACGGCAGCAAGCCCGACTCAGGTGTCAGCAGCTTCTACCTGGACATCCAGCCCTCACCCGACCAGTCCGGCCTGGACATCAACGGCATCAAGCCTGAGCCCATCTGCGACTTCACGCCCGGCTCAGGCTTCTTCCCCTACTGTTCCTTCACCAACGGCGAGACTTCACCCACCGTCTCCATGGCTGAGCTAGAGCATCTGGCCCAGAACATCTCCAAGTCCCACATGGAGACGTGTCAGTATCTGAGAGAGGAGCTGCAGCAGATGACCTGGCAGGCCTTCTTGCAGGAGGAGATGGAGAGCTATCAGAACAAGCCCAGAGAAGTCATGTGGCAGTTGTGCGCCATTAAAATCACAGAGGCCATCCAGTATGTGGTGGAGTTCGCCAAACGCATCGACGGCTTCATGGAGCTCTGTCAGAACGATCAGATCGTGCTGCTCAAAGCAGgctctttggaggtggtgttTGTCAGAATGTGCCGTGCCTTTGACCCCCAGAACAACACAGTCTATTTCGATGGAAAGTATGCTGGTCCTGATGTGTTTAAGTCATTAGGCTGTGACGACTTGATCAGCTCTGTCTTCGAGTTTGGGAAAAACTTGTGTTCTATGCACCTGTCTGAGGACGAGCTCGCCCTGTTCTCGGCGTTCGTGTTGATGTCTGCAGaccGTTCCTGGCTCCAGGAGAAGGTGAAGGTGGAGAAACTGCAGCAGAAGATCCAGCTGGCCCTACAGCACGTCCTGCAGAAGAACCACAGAGAGGATGGCATACTCACAAAGttgATATGCAAAGTGTCGACACTGCGAGCGCTGTGCAGCAGGCATACAGAGAAGCTGACTGCTTTCAAAGCAATATACCCAGACATTGTGCGCACCCACTTCCCCCCATTATACAAGGAGCTGTTTGGATCAGACTTTGAGCAGTCCATGCCTGTGGACGGCTAGCGGCCCCCTTCGTCCTGCCCTCCGGGGGGCAAAAACGCCGTGGGGAATGTCGAGCATGAATCTGAGACACTTTACCAGTGCCCTGCACATACATATATGCccatatgcacacacaaacatacacacacacacatacacaacacacaccgacgcgcacacacacatacacaaacacgtACCAGGACAGCTAACCTGCTGCACACTTTCccgtttttttgttgttgttgttttttcctttgGGAGGGCGTGAGGCAGAGGCGGGTTTGATTTAGAGGGGTAATTTGTGAGGTTTATCCCCTCGTTTTTTGATACAGGTGGGATTGAGGGGGCCCTGGGGAGAGGATGAGAAGATGAAGacactcgttctctctctctctctctctctctcccttttttctctcttactctgtctctctcttttctctctttctggctCAAGCTGAAGCACTCATGCATACGACTCCAGAAGGGTCCCTTGATGATTCCTAATGATCAGCAGAACCTGTTTCCAATGTTTCCAACAacgaaaatatatatactggtTCCAGCAACTCAAGCATCCAGTTTAGAGTGAAATCGATCAAATTAATGACAATAAGCATttcttacttattattattattattattattactacatcTAAGTGGAAAATCTACCCTAAGCCCAAAGAGGGCAAAAACCTGCTGTATGTGCAAGAATTATGACCCAGTATACTGTATGCATGGGCCAAGCTTAGCCTCCTCTCCTCCATTTTTGGTGGGAAGACCTCGCCTCAGAGCGCAATGAAAAGCAGCAATGAAAGAGACTGAAAAAGGAGAGGCAAtggaagagggagagagcggGAGAAACGGGGAGATGGCacgagagagaacgagagtaagaaagagagaggagtgcTGGAAGGAATGTGGAACAGAGCTGTCGGCATTGGGGTGACGTGAAGTGGCACCTATCTAAGGACAAtcgtcaaaaaaaaagaagaagaagaagaaaaaaaaataacctaaGTAGAATTCTGGTAAttctagttttaaaaaaatgcaattactTTTAGCTGTTGAAGACTCCATCCACCATGGTTGCTTAGTGATATCATGTAAGGCCATCTGCTATTAAATCCTTTTCTGGACAGGTGCTTGCAGTTTAACTGAGCACACCGCCACAATGCAAGTCCATTCCACCTGTTTTCTAATGTGCTACAGGGTATATGGTCATAAGTACTTactatacagaaaaaaagtaatgtttaTAGAATCTATTTTAAATAACATGTATGATATTAGTAGCTAGACTATTCTTAATTGTTGAAAAATTGATAAGGCACTTTTATTTGCACCTTTCTTTAATTTAAGACTTGTATATTTACCTAGTGATGTGTTGCATGTGCAAAAAGAAATACAAGTGAAAACCACAGAGTCACAGAGGCTACACGTAGTTGGAAGCTCCTACAacgctgtgtgtgagtgggtggggtttaaGATATATGCTGGGTAAAGGCTGACAGATATCTGTATAGGAAGCTCTGCATTTTAGCACTTACAGAAGTGTAGACACCTAGTCCACACCTGAGTCTACACCTGATCCCAGGTGAGCATGtctgcttttggatattttgagatattttggATAGTTTTACTTCTGCTCTGCAATCACCTCCCATCCACAAAACCTCTAAATCCTCTAAAAGGGAGcttctgtttaaaaatattttttaaaaaatgactcCCACCTGATCTGACACTACTGTGCTTAGCCGTTaactgttaataaaataaaacaaacagtgctaaatacaatttttttggtctcaggtttagtatatatataaacgGTTGTAAAGCACATGGTTTAGAGTTCCAAATCTACTAGCACAAGTGCAATAGTTCCATCTAGTGGTGAGAAGATCACAGTATGCCTCAGTATCTTTAAACTGGGTTGCTGCACAAATcaaaatttaaatacaaattcaaGGCTTGGTGTTAAATATCAAGATCtctacaaagaaaataataataacgataATAATCTAAAAAGCACAATttcaaacaaaactaaaaagaaaatctgtaatatatgtatgtatcaGCAGGGCATTTTTGATTggtaaaatctaatttatttaactatcaaaacattttaaatattttcagatGCCTGCCTTAACATAACAGATTCTGCATAAGAGGTTCTGCAGGAACCATCTAAGAGAATTTGAAAGTGTGTAAACATTACGAATGGCACTGAATGCTCATTTTGACACAGTCtagctttttttctatttctgcgCTGTGTTGTTTTGTGGATGGGTGTGTGTACAGGGTTTGTGCTTGTAAATGTGGAGCTCTTTAAAACAGCCTCTCTGTTAAGGCCTTTGCCCAGCAGCTGTAGCAATAGCTAGGAGAcagttaaagaataaaaaagagagagagaatgaaatatTCAAAGCCTTGTCTGGTAGTAAAAGTTCTATTTTTGTAATATGTACAGTGCATAAGCTGATGAAAGAGGgagtgggagagaaagaaagtgagattATAGAGCACTTATCCCTGCAATAATTagaattgtgtgtgttttttatgtttttgttggaAACAAGGCAAAGTTAGtattagtgttgtttttttctgaataccTATTCGTTGTGTGTTGAGTGAATCTTGATAAACGTGCCATAGAGGTTTCTCCTGCACCAGATGAATccagaaaaaaatgtgttccAGTAACATTCCAGTTAAACTATGGTGTGACTATTATAATGACCACATACAGTATGATCCAGAAATACCACTTTGATAACAAACGTTTAACAAACAATTTTACCGAAcatcaaacatttttaatctGGTGACACCAAATCAaaatttaaatctaattttGTTTCCTCATCTCTTCATAATGATCTGTGTTCAAGTCCTATTTTCCTCAGGGAAGAGTTGTCCTTATTCTAACTCTGACACAGTTGTCATTCATTCATGAAAGATGATGAAAGAAGAAGCTTCACATTTTTTGTGATTTCATTCAAAACATGATCATTAAGATTTTGGACCCAGTTTGACATTACATTTTGATTGATAAATTGATAATTTCCTTTATAATTATCTGTATCTATATTTAAGTGTTAACCCTACAGCCTGTCCCAGAGCCCAGAGTTCACACTTGCAGTTAtaggttttgctgttttttcttgttatacCTGAAACAGCATGTTGGAACATCACTAGTGGAACTAGTGGTAGACATACTCTAATTCGTaattgttacaaaaaaaaagaataattaatgTGAATTGCAGGTTTATACAGGAAGCTTATTCAAACATGAAAGATCATCAACAGAATATTCTAGAATGAATATTCAAAAAAGAAATATCATTGATTTATGGACAGAAAAGGTCTACACCACACAGTGTGAACCTTGGGAAACTTAGGACAGACCACTGGCTGTATTACCAGGCTGATTTACCTGGGTTTATTACCATGATCTCATATACTTATAGATTCTGAGAGCATTTCAGTAGCCATGTTTTTCAGTGCAATGTATTTGATTGGTGTTGCTGACCAGATGATTAAGGAAAGTTCTAACTGCATATGAACATTTGTCAAACTGTGAATGACAATCCAATTCAACCTTTTCTTCAATCCTTTAATATTTTCAATTGGCAGTGTATGGACTTCAACATGAATGCTCAGGGAGAACATTTTATTGAAATTCTGTAAAGGATTATTGgctattgtttgttttatttcagttgTTATACTTGTGTCTAGGATTGTTCATCCCACAAAcctaaaaaacaaatagaaaaatatcAGTAGTTCACTCACTTTCAGCTGTgttaatgtttcattttaaatcataaacatatactaataatattaattacagGCCATTCGCATTACTAATACCATCTAATCCCACAGAACACAATACAGTGTCACACTTTTGGTCcaatttgtatttttctggatGGGGATTGTTGTAATTGTCACTCATATTGCATAAATCTATGTGCCAAATACCTCTTCTACATTTTGCTCCACTAGCAGATTCTGCCCATGAGCCAGGAATTTGTAGTGCGTTACTAATACGGGTTTCTACAGGGTAGCCACTGCTGTGGAGTTCCCTCTGAACAAGCTTTTAATACACAGAAGACTGTTGTCGTTCTTTTTCAGTCTACTTTATCCATATTGATATGTCCTAAAGTCAGTTTCAGCACCCAGTTGCACCATAAGACTGAAGTGTAATGAAGTTATGTTCTACCGCAGCAGAAATCATTTTGTTGGTCTATTAGGTATTAAAAGCAATACAGGCTGTAAAGTAGAACTTTGgacaaatttattttttcaatcgAAGCAAAGGTACTAAATCATCATCTCTGGATTTGTGGTATTTACATGTCGATGTACAGATGCTTATTCTTCTTGTTAGCGAAAGATCCTGCGATCTGTTCTTTGTGTTCTTTGTTCATAGTATATGTATCGTAGTTTGTAGAACAGTATATCTAATCTGTGGTTTCTACCCTCTGtgttaattgtttaatttcttTTGTAAAAAGCAATACGATGCATCTGaacttgtgtgtgtgcgcacgtgtGAGAGAGTATGTTTGATTAAGTCAAACCCCAGACAAGGCTTTAATACATTAGATAAGGAGCAGCAGGGTCAGCTGGTGAAGTATATGGTATATGGATATCTTAGTTTTCCCAGGTTTAATTTACACACTTTTAGTAGCACTGAGCTCGATCCCATCAATGAGGCTGCACAAGCATGAGGCACCATGCACCCCACTGTTAATTCTGTTTATTCATGACTATAGATTATGCAAACCTGACTTTCAAAGGGCCTTTTTTTCAGTCACCAATAGCACAAGTTGAGTTTACAGCTATATCTTCATCTAGGAAACTCGTAGTCAAACTCTTTACTGCTTAGCAAAGGCACTGAATTTTTTCCAAATGTCCTGAATAATGGAAAGGAATTAATGTGTGACATCATGCTTGTcagactatttttatttgaaggtgATACTAAGTGTTACTAAGATGTTGATTGATCTTAatttactgatcattttcattGCATTGTTGAAATgtgattgttgttttttttctgttttgttttgttagtttcttttttaccccccctccccaaaaaaaGCACAGCTGATACAGTTATTAAAAGATATGTTTTAGAATatagaagaaaaagacaaaaaacaaacaaacaaaatttttTAGCCATAATCGAATGTCAAGCAAtaatatatatggtatattatTATTCTTCATCTTTGTGCATAGGCTTTTCACATTTGCATGTAAATACACCTtttatttatcacatttttccccattttattttctctttgtctctctatttttttctggttattatttttgttgtgtatATTTGACTGGTTCTGTTCCCAGGTGGAGAACTAAGAACTTCATATGGCCTGTAAACTGTACAGCTtaatttcactttctctctccctctctcaccttttttctgcttttaattcacgatatttaatgttattattgatCACATGTATAAAGGTAACTTTGTAACTTCTGTCTGTATAGGTAAGAAGAAAATACTGCTATTAAGACCTACTCAGTgcaaatatttatctgtttattgaGAACATCATGCTGTACAGTATCTCTGTTTTTAGTATACTTCTCTCTTTTAGAGTTAGTTTGATAGAGGTAGGGTGTGCTGACattaattttgtgtttaaactgaTGTGTGGTGCTAGGTAAGTTACTTTTGTGAACAAAACTTCTTGATTCCTAGACTAGGCCACTCGATTAGTCCATTCATTTCACTATTGAGTATTGATGCATTATTGATATTAGGACTTGATAAATAATAAGGATAATGATAAAGATTAATTATTATAGTGgtaaaaattacattataaattacCCAGCAAGTACCTGTATCAGTGTGCTAGTCTTGGGACACGGCTCTTGTTTCCTTCTCACTTTAAGAATAGAAGTAAAAGCAGTATCATTGAATTAA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100220 lncRNA downstream 191860 16797045 ~ 16801051 (-) True G74368
TU100143 lncRNA downstream 206872 16770442 ~ 16786039 (-) True G74306
TU100126 lncRNA downstream 245389 16743060 ~ 16747522 (-) True G74295
TU100117 lncRNA downstream 302554 16659503 ~ 16690357 (-) True G74286
TU100116 lncRNA downstream 351255 16640842 ~ 16641656 (-) True G74285
TU100263 lncRNA upstream 167910 17254917 ~ 17255289 (-) True G74407
TU100308 lncRNA upstream 718328 17805335 ~ 17813965 (-) True G74447
TU100451 lncRNA upstream 758119 17845126 ~ 17862741 (-) True G74556
TU100453 lncRNA upstream 770306 17857313 ~ 17866138 (-) False G74556
TU100508 lncRNA upstream 1131282 18218289 ~ 18227676 (-) True G74599
XM_022672209.1 mRNA downstream 4421 16966782 ~ 16988490 (-) True ice2
XM_007246492.3 mRNA downstream 27351 16958574 ~ 16965560 (-) True LOC103044821
XM_007246489.3 mRNA downstream 162930 16814916 ~ 16829981 (-) True bnip2
XM_022672211.1 mRNA upstream 501021 17588028 ~ 17600473 (-) True LOC103045440
XM_007246494.3 mRNA upstream 501021 17588028 ~ 17590144 (-) False LOC103045440
XM_007246510.3 mRNA upstream 791723 17878730 ~ 17885395 (-) True nrg4
XM_007246514.3 mRNA upstream 874688 17961695 ~ 17975485 (-) True etfa
XM_007246515.3 mRNA upstream 903480 17990487 ~ 18110831 (-) True scaper
XR_002650248.1 other downstream 1214488 15761764 ~ 15778423 (-) False LOC103046265
TU99163 other downstream 2447473 14542209 ~ 14545438 (-) False LOC103025073
TU98709 other downstream 4371555 12610834 ~ 12621356 (-) True G73172
TU98667 other downstream 4427945 12564348 ~ 12564966 (-) False fbxo31
TU100463 other upstream 790019 17877026 ~ 17883786 (-) False nrg4
TU100498 other upstream 895740 17982747 ~ 18029747 (-) True G74591
TU100745 other upstream 1852167 18939174 ~ 18940464 (-) True G74791
TU100809 other upstream 1983931 19070938 ~ 19072888 (-) True G74838
TU101215 other upstream 2772687 19859694 ~ 19865982 (-) True G75100

Expression Profile