RNA id: XM_007246494.3


Basic Information

Item Value
RNA id XM_007246494.3
length 1954
RNA type mRNA
GC content 0.50
exon number 2
gene id LOC103045440
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 17588028 ~ 17600473 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTGTAAGGTCAGCACACCCTTATCCAATAAATTGCATGGTTTTAACCTCTGTTCTCTCTTAGGAATGGAAAGTCAAACATACTagcactctctcacacacacacacacacacacacttagatacacacacacacagtaacaggTAGATTATATCGGACTGATCTGTTGCTTTTCGAAGCAATTTACTTATCACACCAGCCTTTACTTTTCCAAGCTTGGGTCTCAGATTATAGTGTTGTGGTTTGGGTGTTCCTATGGGAACTGTGGCCAGTGAGAGGCAGAACTCTCTCAGAGGCTTCTGGAGGTGTGCACGAGTGGTACTTGACTCCACCCACCCTGCGCCTGCTGTATAAGTAGCCAGGAGCTCTTTTCATGCGTTACTGAAACACCGGTCTGAGAGGAGAGAGCTACTGTAGCCGTGGAGAGCCTGTCTAATGCAGCAAACTGTTCAGTCCTATTGATCTGCTAATAAGATCTTTAAGGTCGATCTCATGTGGGTGGTCGAAAAGATCCGTGTGTCAGTGGAGAGCACCAATCTGCTTCTTCCAGTAACGGAATACACCTTCAGAATCTGCGACATGTTTGGAGAAAAAGCGCCCGCTGACAAGCTCAAGAAGTCCACGCTGTGTCCCAACATCATCACCCCAGACACCATCCCTGAGTTCTGCATCCCACCTAAAATCTCAAGCTCCCTGGACCAAGGGAAGCCAAGCCCTTGCATTAGGGTTTCAACGGAAAAGGGCAGCCCAAAGAAAGAGATGCCCTTACGAGAGCCAATCAGCACCCACATCATCCAAGTGGAGAGTGTGGACGATGGGCCGTACGACAACGCCTGCAGCGATGAAGAGAACACCAATGCTGACCCCCAGAGCCAGGCCGCTCTCTCCCTGCCCCACCTGGCCAAAGCCCAGACCTGCTACGGCTTCTGCACGCTCCTAGAGAGTCCCCACACCAGACGCAAGGAGTCCCTCTTCCACAACGACCCAAGTTCATGTGGGATTCCTTTGGTTCTGCCCAGGAGCAGATCCCATACCTGCTCTCGATCTTCTCCATCTCCTCTTTCTCCAGCATCCCCTTCACCCTCCTCCTTTAGCCTGAACACTTTAACCTCTAGACTCTCCCCCAGGAGCTTCACCCTGCACAGGCAAGGCACCTTAGACAGTGACACCACGTCTTCAACAGAATCATCCCCATTCAGTTCACCCCTTCTGGCCAGATCCCCACCCAAATCGTCCCTTTTCAAAACACTCAGCCATGAGAAACTGCTCTACCGCAATATCCGGAAGGCCACCGTCTCCAGGAACAACTCCCTATCAACGGATGAGGGCAGCTCCACAGATAACAGCCCTAACGTCATGAGGAGATCATCAGATGCACTCATAGAACCTCTCTCCTGCAGCTTCGGCCTGGCGCCTCCTGCAATCTTCCCCATGGACTTGGTTCTCCACAGGGAGCGGGTGATGAAGGAGAGCTTGATACCCATAGGCAGGGATGGAGCCCTGCGAGTGTCCGCAGAATACTGCCCAGAGAACCAGAGGTTACGGGTCAGACTCATCAGCGCTGAAGgcctttattctctctctgtgGACCCTAAGAGCATTAACTGCAGCGTCAGCCTCTCTCTCATGCCCGGAAAGGTCCAGAAACAACGCAGCACCGTCATTAGGAAGAGCCGAAACCCCATCTTTAATGAGGACTTCTTCTTTGATGGCATATCCGAGGAAGATCTCAGCCAGTGGTCGCTGAGGTTTAAAGTAGTCAACAAAATGTCCACAATGAAGAGAGACTATATTCTGGGCAGTTCTGATCTTCCTCTTACTAGCATTGTCAccttataaaaaatgtatactcAAGCTTgcagtctttatttatttgacctGTCAatgttcattatttatttacagttttatatgACGCCAAAGATTTTGTTTCTATTAAAAGATGAAAAGCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100263 lncRNA downstream 332739 17254917 ~ 17255289 (-) True G74407
TU100220 lncRNA downstream 786977 16797045 ~ 16801051 (-) True G74368
TU100143 lncRNA downstream 801989 16770442 ~ 16786039 (-) True G74306
TU100126 lncRNA downstream 840506 16743060 ~ 16747522 (-) True G74295
TU100117 lncRNA downstream 897671 16659503 ~ 16690357 (-) True G74286
TU100308 lncRNA upstream 215191 17805335 ~ 17813965 (-) True G74447
TU100451 lncRNA upstream 254982 17845126 ~ 17862741 (-) True G74556
TU100453 lncRNA upstream 267169 17857313 ~ 17866138 (-) False G74556
TU100508 lncRNA upstream 628145 18218289 ~ 18227676 (-) True G74599
TU100560 lncRNA upstream 760487 18350631 ~ 18350936 (-) True G74640
XM_007246493.3 mRNA downstream 162567 16992911 ~ 17425461 (-) True LOC103045127
XM_022672210.1 mRNA downstream 501021 16992911 ~ 17087007 (-) False LOC103045127
XM_022672209.1 mRNA downstream 599538 16966782 ~ 16988490 (-) True ice2
XM_007246492.3 mRNA downstream 622468 16958574 ~ 16965560 (-) True LOC103044821
XM_022672207.1 mRNA downstream 758047 16817642 ~ 16829981 (-) False bnip2
XM_007246510.3 mRNA upstream 288586 17878730 ~ 17885395 (-) True nrg4
XM_007246514.3 mRNA upstream 371551 17961695 ~ 17975485 (-) True etfa
XM_007246515.3 mRNA upstream 400343 17990487 ~ 18110831 (-) True scaper
XM_007246519.3 mRNA upstream 526301 18116445 ~ 18123698 (-) True LOC103024839
XM_022672219.1 mRNA upstream 535643 18125787 ~ 18141692 (-) True sqor
XR_002650248.1 other downstream 1809605 15761764 ~ 15778423 (-) False LOC103046265
TU99163 other downstream 3042590 14542209 ~ 14545438 (-) False LOC103025073
TU98709 other downstream 4966672 12610834 ~ 12621356 (-) True G73172
TU98667 other downstream 5023062 12564348 ~ 12564966 (-) False fbxo31
TU100463 other upstream 286882 17877026 ~ 17883786 (-) False nrg4
TU100498 other upstream 392603 17982747 ~ 18029747 (-) True G74591
TU100745 other upstream 1349030 18939174 ~ 18940464 (-) True G74791
TU100809 other upstream 1480794 19070938 ~ 19072888 (-) True G74838
TU101215 other upstream 2269550 19859694 ~ 19865982 (-) True G75100

Expression Profile