RNA id: XM_007246521.3


Basic Information

Item Value
RNA id XM_007246521.3
length 2526
RNA type mRNA
GC content 0.43
exon number 10
gene id sqor
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 18125787 ~ 18141692 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGGGCGGATTAATTACTCTGGGCGAGACTGCGTTATCTTTCGTAGTGAGGGGGTTATGTAATATCCGCTGTAGTTAGTGAGAGTGTGATAGTGGAGTTTCCTCACAGTGACAGTAACTGTCTCTGGATCACCCGCTCTTCCCCTCCCGTGGGTGACGTGCAGAATGTAAACTACAGTGAACCAGGAACATCTCACACTCAGCAGGAAATCGCTCGGGCTGCATATGGTGGCTGGAACAAGCTCGTGCTCATTCTGAAGGACTGGGaTCGAATTAACTGCAGGACAATGGCTGTAGCATTCACTTCACATCTGGCTCCTATTAGGAAAAGCAGCcgggtgtttttttctctcaactCCTACATCCACAGCAGCAGCGGACTGGCCTCCAAGGAACACTACAAGATCGTTGTGCTTGGTGGAGGAAGTGCTGGCATTACGATGGGCGCCCGCATGAAAAGAAAAGTTGGTGCAGAGAATGTTGCCATTGTGGAACCCAGTGAGATGCACTATTACCAGCCAATCTGGACCCTTGTTGGGGCAGGGGCTAAAAGTATTAACTCATCCGGACGCCCCACCTCCAGCGTGATGCCCTCAGGAGTTAAATGGGTCAAGTCCAGCGTCACAAAGATTGaccccaaaaaacaaaatgtgtccTTAGACTCTGGCAAAGAACTTTCCTATGACTTTCTGATTGTAGCACTTGGCCTCACGCTTCACTATGAGAAGATCAAAGGCCTACCTGAAGCATTTGAACATCCTAAGATTGGCTCCAACTACTCACTGCAGACTGTGGAGAAGACGTGGAAGGCATTACAGGACTTCAAGGAAggaaatgctattttttcttttcccaaCACTCCAGTCAAGtgtgcaggagctcctcagaagATCATGTACCTTTCTGACGCCTACATGAGAAAGACAGGAAAGAGGGCTAAAGCCAACTTTGTCTACAACACGTCATTGCCAGTGCTGTTCGGAGTGAAGAAGTATGCTGATGCCTTGTGGGAAATTGTGAAAAAACGTGACATAAATGTGAACCTCAGACACAACCTAATTGAGGTCAGACCAGACAAACAGGAAGCTGTATTCGAGAACCTTGATAATCCTGCGGACACAAAGGTTTATGAGTATGAGATGCTCCATGTTACCCCTCCTATGGGACCACCTGCAGTGCTGAAAGGCTCTTTACTGGAGGACGGGGCAGGCTGGCTGGACGTAAACAAGGACACCCTTCAGCACAACACATACAGTAATGTTTTTGGAATCGGAGACTGCACCAATGTACCAACTTCcaaaactgctgctgctgtggCTGCCCAGTCTGCTGTCCTCGACAGAACCATTACCAAAGTAATGAAGAACGACAAGCCTGATAAAAAGTATGATGGCTACACCTCCTGTCCTCTGGTCACAAGCTTCAACACAGTTATCCTGGCAGAGTTTGACTACACTGGACAGCCTTTGGAAACCTTCCCTGTGGATCAGAGCAAAGAAAGTAGAATCATGTATCACATGAAAGCAGACCTGATGCCCCATCTGTACTGGCATGGTCTTCTCAAGGGGCTTTGGGGAGGCCCAGGACCATACAGaaaaatcatgcatcttgggatgAAATAGACTCTGGGCCTTCGAAAGGAATCAGCATTGCTAATATAAAACCATGCTCTGCTCAGATCTGATCGTAACATTGTAggtaaataataacaattactGTGGTTATTTACTAAGAAATGTACTTACATTATATAACCAAATGTTTAATGATTCCCTTTccaattaatgcatttatttcaaAGGCATACACATATAGCGTATCTAGGCCCTACAGAGACCATGCTTATTGCAGTCACAGGCTGTCTGGAACGATGGtcctccatccagtacttttaggTTGAGGataaggtggggtggtgatgATGAACAGGTGTCACAATACTTTTGGTCACATAGTGTACCTAACTCATTCTCTTGATGTTAAATATGCAGTGTATTGTGAAAGTTTAAAAGTACTAATTAGGAcgattactgtttattttaatgatatgGTAACTTTTAAGGATTTACCAAAAATGATACATTCTAAAAAATAGTTGTAATCATTTTCTAGCTTGTACAGATTGCTGATAAAACACTTTCAAGATAGCAATTTTATTTTTCGACAACTTGaagcacttgttttttttgcatttttggatAATATTAATGATCAATGACCTACTGTTCAAAACTTAGAGATGTGCAAAATAAAGTGATAAAAGTGACACAAGCAGTGAATTAGCATTTGCAGAAAGTGCATTTACCGGACcagtttcacttttttaaaatgaagcaaGGACCAGGGAAGACAGACTTACTCAAATGAACAAATATTAGAGCTCCCATTAGAAGCTGTGCTTTgtgaataataaattatttgaaagtacttgtCATACAGTTTTTGCATTCAAATAGTGCTGTGTCGCATCTCATCCTTGAAATGTGGCTTCCCGTTGTCTACTTCAGTAATAAATTCATTTAACAGTT

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100453 lncRNA downstream 259649 17857313 ~ 17866138 (-) False G74556
TU100451 lncRNA downstream 263046 17845126 ~ 17862741 (-) True G74556
TU100308 lncRNA downstream 311822 17805335 ~ 17813965 (-) True G74447
TU100263 lncRNA downstream 870498 17254917 ~ 17255289 (-) True G74407
TU100220 lncRNA downstream 1324736 16797045 ~ 16801051 (-) True G74368
TU100508 lncRNA upstream 83535 18218289 ~ 18227676 (-) True G74599
TU100560 lncRNA upstream 215877 18350631 ~ 18350936 (-) True G74640
TU100649 lncRNA upstream 467223 18601977 ~ 18607745 (-) True G74704
TU100659 lncRNA upstream 478622 18613376 ~ 18614926 (-) True G74711
TU100664 lncRNA upstream 494307 18629061 ~ 18629405 (-) True G74716
XM_007246519.3 mRNA downstream 2089 18116445 ~ 18123698 (-) True LOC103024839
XM_007246515.3 mRNA downstream 14956 17990487 ~ 18110831 (-) True scaper
XM_007246514.3 mRNA downstream 150302 17961695 ~ 17975485 (-) True etfa
XM_007246510.3 mRNA downstream 240392 17878730 ~ 17885395 (-) True nrg4
XM_007246494.3 mRNA downstream 535643 17588028 ~ 17590144 (-) False LOC103045440
XM_007246528.3 mRNA upstream 42928 18177682 ~ 18188399 (-) True galk2
XM_022672232.1 mRNA upstream 93598 18228352 ~ 18375654 (-) False LOC103025779
XM_022672233.1 mRNA upstream 93598 18228352 ~ 18375654 (-) False LOC103025779
XM_022672225.1 mRNA upstream 93598 18228352 ~ 18375654 (-) False LOC103025779
XM_022672229.1 mRNA upstream 93598 18228352 ~ 18375654 (-) False LOC103025779
TU100498 other downstream 96040 17982747 ~ 18029747 (-) True G74591
TU100463 other downstream 242001 17877026 ~ 17883786 (-) False nrg4
XR_002650248.1 other downstream 2347364 15761764 ~ 15778423 (-) False LOC103046265
TU99163 other downstream 3580349 14542209 ~ 14545438 (-) False LOC103025073
TU98709 other downstream 5504431 12610834 ~ 12621356 (-) True G73172
TU100745 other upstream 804420 18939174 ~ 18940464 (-) True G74791
TU100809 other upstream 936184 19070938 ~ 19072888 (-) True G74838
TU101215 other upstream 1724940 19859694 ~ 19865982 (-) True G75100
TU101358 other upstream 1892408 20027162 ~ 20032027 (-) True G75207
TU101364 other upstream 1952664 20087418 ~ 20100250 (-) False hsd17b12

Expression Profile