RNA id: XM_022672217.1


Basic Information

Item Value
RNA id XM_022672217.1
length 6220
RNA type mRNA
GC content 0.45
exon number 29
gene id atp8b4
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 18141013 ~ 18177415 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGATTGACGGGCGTTTAAGATTCTTAGGGAGCTGTTGGAGGTGGTCTGATGTTATGGCGATTCAGACGAAACACATTTGCATTGAATGACAGTGCAGACAGGCAATGGCGCAGAGATGGCTGTGGATGTTAGTGCCGTGGAGAGGAGGCTGGAACCTGCGCTCCAAAGCGCCTGGACAAGAGGAGGAACGACATGTTAGAGCCAATGATCGGGACTACAATGAAAGATTTAGTTATGCTGATAATCACATCAAGACAGCAAAGTACACCTTCTACACCTTTCTACCAGTTAACTTGTTTGAGCAGTTCCAGAGGTTTGCTAATGCTTACTTCCTAGTGCTGCTCATTCTACAGttAATCCCTGAGATCTCCTCTCTGTCCTGGTTCACCACCATTGTGCCTTTGGTGTTGGTACTGACTATCACCGCTGTGAAAGATGCTACTGATGACTATTTCCGCCATAAAAGTGATCAACAAGTTAACACTCGTCAGTCTCAGGTACTCATCAAGGGAAAgatacaaaatgagaaatggatgaatgTTAGAGTTGGTGACATAATAAAACTTGAGAACAACCAGTTTGTtgctGCAGACGTGCTTCTGCTCTCAAGCAGTGAGCCGTATGGTCTGTGCTATATCGAGACTGCAGAGCTAGATGGAGAAACAAACTTGAAGGTGCGCCAAGCTTTGACTGTAACCTCAGACCTTGGAGCAGATGTTTCCAAGCTTGCGGAGTTCAATGGAGAAGTTATATGTGAGCCTCCCAATAATAAACTGGACAAATTCATTGGAACACTGTATTGGAAGGACAACAAGTATTCTCTGGACAATGAGAAAATGCTGCTGAGAGGCTGTATACTCAGAAACACAGAGTGGTGTTTTGGCATGGTCATCTTTGCTGGGCTCCAAACCAAGCTGATGCAGAACTGTGGGAGGACGAAATTCAAAAGGACGAGCATTGACAGGCTGATGAACACTTTAGTGCTGTGGATTTTCGGATTTCTCATCTGCATGGGGATCACCCTGTCTATTGGAAACACGATCTGGGAGCAAAGAGTGGGCAGAGACTTCTGGGCATACCTGCTCTGGGACAAACTCCTAAGCAGTCCTGTCTTCTCTGGATTCCTCACTTTCTGGTCTTACATCATCATCCTTAACACTGTGGTTCCTATCTCTCTTTACGTCAGTGTTGAGGTCCTTCGTCTAGGCCATAGTTATTTTATAAACTGGGACCGGAAGATGTACTACAGTCGGAAAGACACTCCGGCCGAGGCTCGAACCACCACTCTAAATGAGGAGCTGGGCCAAGTCGAGTTCATCTTCTCAGACAAAACAGGAACGCTCACCCAGAACATTATGGTCTTCAGTAAATGCTCCATCAATGGAAAGACCTATGgcgaTGTTTACGATGACTTTGGACACAAAGTGGATATTACAGAGAAAACACCATGTGTAGACTTCTCCTTCAACCCGCTGATGGACAGGAAGTTTCATTTCCATGACAGCAGCCTGGTGGAGGCCATTAAGTTGGAAGAGCCATTGGTGCAGGAATTTTTCAGACTCCTCGCTTTGTGTCACACAGTGATGCCAGAGGAACGAAGTGAAGGAGAACTGGTGTATCAGGCTCAGTCTCCAGATGAAGGAGCCCTGGTCACCGCCGCTCGCAATTTTGGATTTGTATTTCGAGCCAGGACCCCAGAGACCATCACTCTATATGAAATGGGCCAGTTTGTCACTTACCAGCTCCTGGCCATTCTTGACTTTAACAACGTCCGCAAGAGAATGAGCGTTATCGTCAGAAATCCAGAGGGCCAGCTGAAGCTCTACTCTAAAGGAGCAGACACAATAATCTTTGACCTACTGGATCAATCCAATGAAGAGCTAATGTACACTACCTCAGAGCACCTTAACGAGTTTGCTGGCGAGGGTCTGAGAACGTTGGCCCTGGCCTATAAAGATCTGGATGAGGACATGTTTGATGAGTGGATGAAGAAGCTGCTGTTTGCCAGCACATCATTAAATAACCGAGAGGAGAGTTTGGGGGCTCTTTATGAGGAGATAGAGGAAGGTCTAATGCTTCTTGGTGCCACAGCCATAGAGGATAAATTACAGGAAGGAGTGCCAGAAACAATTAGCTGTTTGACTCTGGCCAATATTAAAATCTGGGTCCTCACTGGAGACAAACTAGAAACAGCGATGAACATCGGCTACTCCTGTAACATGCTGAGAGACGACATGAACGAGGTGTTCATAATCTCAGGTCACACCCTGCTGGAGGTTCAGCGCGAGCTCAAAAATGCCAAAGAGAGGATCATGGGTCCCAGCAGAGACAGATTCAGCAGTGGCCAGGATGTGGGGAAGACAGATATGTATGCCAGTGACTCTGTGTTTGAGGAAACCATCATTGCAGAATATGCGCTGATCATCAATGGACACAGTTTGGCCCATGCCCTGGAGGCAGACCTGGAGCAGATCCTGCTGGACGTGGCCTGCTTGTGTAAGACTGTGATTTGCTGTAGGGTCACCCCTCTCCAGAAAGCCCAGGTGGTGGAGCTTGTTAAGAGACATAAGAGAGCTGTGACTTTGGCCATCGGGGACGGAGCCAATGACGTCAGTATGATCAAGACTGCACACATTGGCGTGGGCATCAGCGGGCAGGAGGGCATGCAGGCTGTACTCGCCTCAGACTACTCCTTTGCCCAGTTCCGCTACCTACAGCGCCTCCTTCTGGTTCATGGCCGCTGGTCATACCACCGCATGTGCAACTTCCTCTGCTACTTTTTCTACAAGAACTTTGCCTTCACGCTGGTACACTTCTGGTACGGCTTTCTGTGTGGCTTCTCTGCTCAGACCGTATATGACCAGTGGTTCATCACCCTGTTCAACATTGTCTACACCTCTCTACCGGTTCTTGCCATGGGCCTGTTTGACCAGGACGTGAATGAGCAGTACAGTCTGCGCTACCCCAACCTCTACCGACCCGGGCAGCTCAATCTGCTGTTTAACAAGCGCAAGTTCTTCACCTGCACACTTCAGGGGGTCTGCACCTCCTTTGTTCTCTTCTTCATCCCGTACGGGGCTTTCCTCAGTGCTGTCAGAGACGACGGCTCACACATAACCGATCATCAGTCTTTCGCTGTTACCATAGCAACCTCACTGGTCATTGCGGTCAGCGTCCAGATTGGGCTTGACACAAACTACTGGACTGCAGTGAACCACTTCTTTGTTTGGGGCAGCCTGGCTGTTTACTTTGCCATTCTGTTTGCAATGAACAGTGATGGCATCTTTCGAATATTTCCAAGCCAGTTCCCTTTTGTAGGAACAGCACGGAACACTCTGAATCAGAAGAGCGTGTGGCTCGTCATTCTCCTCACCACCGTGGTGTGTACAATGCCAGTGGTGGCCATGCGCTTCCTTAAGACAGACCTCCATCCCACGCAGACTGACAAAGTACGTTTGCTGCAGCAGGCCACCAGGAGGCAGAGTCCTCAGGAGCAGAACCTCAGGCGGGTACGAAGGACCAGCTCCCGCCGCTCGGCCTATGCCTTCGCCCACCAGCAGGGATACGGAGAGCTCATCACCTCCGGCAAGAACATGAAGGTCCACACCTCCTCCACTTCAGCCTTCCCTGGCAACTCTCTAGGGAGAACCCACAGCAGTAGCAGCTGGATAGAAAGCATGCTGAAGAAGAGAGGGGACTCGAACAGTGCAGTGGAAGCTGAGGAGACCACAGATTCTGGAATTACAGATCAGACTAGAGTGGATGTGCTGAGCGAACACAGCCTGGAGACTCTGTACACAAACTGACCCACTGGAATACAGTTACATAGGGCAAGCAGAGACCTCCCATCTCGGTGACGAGTGAGATTTCTCCTTCATCATTACGTCACCATCGTACACAGAGGTAAACTGGCATATGCACCAGTCACTTCTTGACATGTTTGTAATGCCATAGTTTGAAAGATACGTGGTATTGGAGCAACATCGAACTCCCAAACAACACACAGATGCACTCTGGGCATGCACTCTTATACCTCACAGCTGTATGGCTTTATGGAGAGCTGTTCACAGAAAACTGCACATAAAGTGGCACTAAGGAGACCAGCACTGCACAGGAGAGACTCCAAAAAGCCAGCATACTGAAGCACAGATAACAGTCCTTACCTTCCTGTCCTAATTTCCTCTTTCATGCAAATACACTCTATTCTCTGGGTGCATTCTACATTTAATTGTGGTTCATTGACTCAGAGAATGCATTCTGTTTCTAGTCAATTTAGTTTTGATTTAATGTTATTTCCCTAGTGGATGgacacaaacatgcaaaaatgcGTAAATGTTGCTCCAGAAAGCCACGCATTTTACAGAATTTCTGAAAGGTTCTTCATATGCTTCCAGTACACTGCAGATCCAGCCAGTAGGCCACACACAATTTAATTGTCTGCACAATTTCAATGCAATTATTTGAGCTACTGGTGAATTTGGGAAAACTGCAAGTCTCTCAGGAGTTACACATCACATCTTATTTATTTCAGCATCATAATGTCAAGATTATCATTTAGGCAACTGTATTGTTTTACCACATTCTTATGGTCTCCCAGCTGGAATATTATCCATGCATTGCTTATATTGCTTATATATCTCTTGATACAATATTACCTCCTCTTAAACTATTATAAACCTTAATCTACATTTTACTTGATTTGGATCAGTTtctaaatgcattaaataactGCAGATGTACTCTcgacatacaaaaaaaaaaaaacatcaaaaactaaAGAGCTTAACACTGTATCAAGTGTTAGTCCACAGAATTTACTCGACCTCGCTATCAAATAATCTCAAAAATGTTAATGATTTATACAGTACTAAGAATGCGATAGGCAAATTTTAGAATAGAGCCATCTAGACTGCTTGTAAACTAGCTTCAGCATTGCGACGGAATAGCATTAGCCGAGGGCATCCACCACTCGTGGCTTAGCCCTATGACCATTTTTACAAACTAACCAAGATCACATTTACAGAATCAGTTTGTTTGTAAGTATATCTCTCCTCTCTAGTgcttatacactgacatgccacatgtcatgggacTGGAACTGGCACCATCTCCTGTGACTTTTACCACTGTACTGACCTGTAGGATATATATGTGTGGTCTCCTGCTTTGAATGTATGTTTGGATGTGAATCCTGCCGCTTGTCTATTCGCACAGACAAACAGATCATTTTAGCCAGATGTTGTCAGTCACGATCaataccacccactgcactgtccactctgTGTGATAATGcttataatattttttcccGGTAAACACATGACATTGTGGATCAAAGAATGTCAAATGTCTGCACAACTTGGGAAATAGAATGCCCCACTCATCATGTGCACATTGACCAGTGTTTagtctcactcacaagaaaacacctcacagcttatacagatatgggtgttcccaagccctcccctgaggtaacacgtCACAATCTATTGACATACTTCtgccccatgacttttggcatgtcagtgtacaatAGAGCTTTGCATGCAGACCAATGAAATGGTGAAAACAGTGAAATTTCAGAAAATACTGCAGAAGATAAAGGTAACAGTTCAGAGCCTACACAGCTGTGCCTTTAATCCGCCCTCTATAGATAGGTCAAGCATTTACTTTTACAGTACCTGAACAGGTCATAACTATGGCTATCTACAGAAAGGTCTTCAAACTGGGCATTTGGTTCACTGTCCTTTTGTAAAAGGGAAATTTTGTgcctttttattttcctttcagtAAAGGAAGTATATTTTTGAGTTTAGTACAGTATTTTATCACAGTGCCACCAAGGCCTTGTTTGTCATTTTGACCATGTTACAAACCACAAAACTCTGTAAAAGATAATGTTCCAGGCAGACAATTCATGTCTTCGTTGATATTTAATTACACTGAGATATAAAGAAGTTTTACGTTTTCTATTTTAAACTATTGATCTTGGTGGCAGAGAGTTGTGCAGCGTAATTCATTTTTATGAATGTACAGTCAATGCCTCATTTAACATAATGTTAAATATCTTAAGAATGTCTGAGGAATTTTCCTGCTGTGCTATTTTGTCAAAGAAGACCATGCAAATTGTTTatcgtttttatttatatgcatgGATTTTATACAATTCattgtacttttttataataaGATGTATAAAAGGGCCATTCAGAATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100353 lncRNA upstream 8332 18115583 ~ 18132859 (+) False G74477
TU100377 lncRNA upstream 17356 18120609 ~ 18123835 (+) True G74494
TU100347 lncRNA upstream 146058 17994594 ~ 17995133 (+) True G74471
TU100332 lncRNA upstream 176416 17961696 ~ 17964775 (+) False G74461
TU100330 lncRNA upstream 177654 17961696 ~ 17963537 (+) True G74461
TU100356 lncRNA downstream 280 18177695 ~ 18179770 (+) True G74479
TU100397 lncRNA downstream 34497 18211912 ~ 18213361 (+) True G74510
TU100428 lncRNA downstream 194301 18371716 ~ 18375539 (+) True G74535
TU100578 lncRNA downstream 284029 18461444 ~ 18462636 (+) True G74654
TU100586 lncRNA downstream 300714 18478129 ~ 18479345 (+) False LOC103029914
XM_007246513.3 mRNA upstream 154967 17979428 ~ 17986224 (+) True isl2
XM_022672215.1 mRNA upstream 179530 17887308 ~ 17961661 (+) False tmem266
XM_007246511.3 mRNA upstream 180665 17887317 ~ 17960526 (+) True tmem266
XM_007246495.3 mRNA upstream 264952 17868563 ~ 17876239 (+) True lactb
XM_007246529.3 mRNA downstream 12596 18190011 ~ 18195649 (+) True cops2
XM_007246530.3 mRNA downstream 18735 18196150 ~ 18211686 (+) False cep152
XM_022672223.1 mRNA downstream 18736 18196151 ~ 18211686 (+) False cep152
XM_022672221.1 mRNA downstream 19944 18197359 ~ 18211686 (+) False cep152
XM_022672222.1 mRNA downstream 19952 18197367 ~ 18211686 (+) False cep152
TU99974 other upstream 1852862 16286676 ~ 16288329 (+) True G74169
XR_002650242.1 other upstream 3220188 14891534 ~ 14921003 (+) False rpgrip1l
TU99159 other upstream 3491640 14648829 ~ 14649551 (+) True G73533
XR_002650241.1 other upstream 5243260 12871484 ~ 12897931 (+) False LOC103043719
trnar-ucg_4 other upstream 5537767 12603352 ~ 12603424 (+) True trnar-ucg_4
TU100573 other downstream 277436 18454851 ~ 18455197 (+) True G74649
TU100801 other downstream 905401 19082816 ~ 19085556 (+) True G74832
TU101007 other downstream 1350576 19527991 ~ 19533073 (+) False LOC103044129
TU101298 other downstream 2026204 20203619 ~ 20207922 (+) True LOC103028745
TU101630 other downstream 2845841 21023256 ~ 21025128 (+) True G75383

Expression Profile