RNA id: XM_022672223.1


Basic Information

Item Value
RNA id XM_022672223.1
length 5409
RNA type mRNA
GC content 0.48
exon number 28
gene id cep152
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 18196150 ~ 18211686 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCCATGTTTCAACTGCTGACGGAAGCTGGCTGGCTGTGGAACTCAGGAGTTACTGATAGCGTCTCACAGAGAACGTAGTTAAACCCCCTGTAACAGAGCCGGGGGTTGTAGAGTATGATGTACATTTAGAGTTGGCGGGAAAAGAACACTAAACTTAGCTTTcagagtaaaaatatttttaaaatgtatctgGAAACACTGTTTTCACTCAGCGCTGTGATTTGTGCTGTCTCTGTGGTTAACGTTAGCTCACTGTTTCTGGATTAACCGCTCTACTGACTCGTGGAATCAGAAGAAGACTAGTTTAGTTCGGTCTGTGGATTATTTCTTAATCTGAAGCTGCACAAGCTCCTGACTGACCTTCCAGATGATATGCTGGAGGACAGTCGGGACAGCTCCTCACCTGAGCTGGACTACTCCACCTGCAGCCACCAAGGATCCAACAGaTCACAGCATGCTTGGAATGGAGGTCCTGAATGGTCTGATCAGCCAAGACCGTCTTCTGCTGAAGAGGGGTACACCTATGACCACACAGCTGCACAGCCAAATGGCCACGCTGATCATCTCCGGGGTGGAACAGAACATTTCCCCCAAGTCTGGGACCAACATCAGGGTCACAACTATCAGCATGAGTCTGGAGACTATGTCTACTCCTCTGCAGAAATGGCAGGGTCCAATGGCATCAATGATCTATCTAATGATGATGGGTATGAACAGGAAGCTTACCCACAGACAGGCTTCCACCATGGAGTTGAATCTAAGGTAGATGGCCAAGGCTATATGGAACATGCAAGTGTCAGAAACCATTTTCAGAATTTTGATAATGGGAGAACAGAGGGAAAACCTGATGATCGTTACAAAGCTACTTTCCGTCCACATAATTCAGCAACCCAGCCAAAGATGTTCAACACAAAATCATCAACACAGAATGATCACTTTAACCAGCTTCAACAGGACTTTCTTGACTCATCGCCAAGTGCTGTTGATGCTCAGGAGTGTGCTCAGttaaagattttaaacaaaGCTCAGTCCAGGCAGATTGAGGACCTGGAGCAGAAGCTAGAGGATAGCAGACGAAAAATGAGATATTTGGAGCATCAGTTCGCAATCATAAAAGATGAAAAAGAAGGACTGGCAATATCATTGAAGGAATCCAGTCATCTGATAGAAGAAGCAAAAGAGAGGGAAACACAGCTACAAAGCAAAGTCAGGTCTCTGGAGCGACAGATCCAGACTCTTGCTGAGCGAGAACAGGAGAACATGAAAAAGCAGCATGCTGCAGATGCAGCAGTAGATAGCATGCAGCAGCAGATGATTGAGTTGTGTCGCTCGGACACGCTGACACGAGCACGGGAGCAGCATGACAGAGACATGGCTGCCATGAAGGAACAGCATGAGGCTAGAATACTCACCCTTCAGCAAAAACTGGACTCGCACACTCAGAGCCTGGAAGAGCAGGTGCAGGCAGCTCAGAGGCTGCGGGAGCAGGTGAGGCAGctggagagacagagggaggagGAGCAGGTGGACAGAGCTACAGTCATCAATGCCCTCACACAGCGCTTGGAGGAGAGCcagcagcagtgtgccaagCTGCTCCAGACTGGGTCTGTGCAAGAGATGAGCCAACTGCAGATAAAACTACAGCAGGCTCAGTCAAGCCGCAACATCAGTGAGAACATGAATAAAGCACTGCAGGAAGAGCTGCAAGAGTTGAAAGAACAGATCACCCTGTATGAGTCTGCTGTCAAACTTGGAGCAGTTTCTTTTGATTCCAACACAGACTGGGAAAACCACCTCTCTGAGTCTTATATAGATCTGGGTATCAAGAAAGTGCACTGGAAAAATCAAAGGAATCAAAGcacgcCTGTACCATCAGACTCCTGTCTACCCAAAGAGGACTTGGTGAAGGAACTCAAGGCTGAGCTGCAGCGGTGTCTAGCACAGCTAAAATCCAAGAGGCAGAGGATCTCCCAGTTACAGGAGGAGTTGCACACTTCACGTAGCCGTACAGATCATCTGCAGACCCAGCTAGATGGAGCAGAGAAGAGAGCTAAAGACTCTGTGGTGAGGGAAAGCAGCCTGGAAAAGCTTCTGGAGCCATCCAATAAGGTATCCCAAAAAGAACTTCAAAAACTAGAGGAGGAGCGACAGAACCTACAGAAGAGAGTAGagGCTCTTGAGATGCGGAATATGGAGCTAAAGCAGAGTGAGGAAAAGGTCAAAGCAGCAAATTTTGAGCTTTGCACCAAGATGAGAGAGATGATTCAAGAGCTGGACCAGGAGAAACAGGAGGCTGCAGAGCGGCATGAGAGGGTCCAGCAGCAGTTCAGAGATGATGTGGTGCAACATGTTCAATCCGAACTTACACAGCAGCACACAGCTGAAATGGAGAAGCTCACTGCCCAACATCAGGAACACATCCAGCAACTGGAAGCCAGGTTGGCTGAGCTCAGTCAAGAGGTTCTAGCAGTACAGGAATGTTACATTTCTGTTTGCAAAGAAAAGGACAAACTTGAGGAAAACCTACAGAGCAAGACTGAAGATGAGAAGAAGCTAAGAGAGAATGAGgtcAAGAAAACAGAGGAGACTAAGGTGGCTTTAGAGAGGCTAAAGACTGAATTGTTCTCTCAGCACCAGGAAGCTGTTTCCCAGCTCAAAGCACggtgggagaaagagaaagaggcagagatCCAGCAAGAGGTCGCCAAGCAACTCTCCTCAGCCAAGCAGAGTTGGCAACAAGGGCAGGAAGAGCTGGAGAAGAACTGGGCGATCAGACTGGAGGAAGCTGTGAAGGAGAGTCAAGAAGCTCAAGCTGCAAATGCCCAGGAGAGCTCTTCTCAGACGGAAAACCTAGAGTCCGCAGCTCAGTTTTTCTCCCTGGAGCAGCTGGAAGCCAGGCTCAGTGCCCAGAGAGCTGCGCTACAACGAGAGGCAGACACCAACCTGTCCAAAGTGGTGGAGGATTCATTGAGGCAGAGGGAGAAAGAGCTTCAACAGAAACATGTGAAGCACATGGCATTACAGGTTGAAGGTGCAGTGTCCAGGGCTCATTCTCGCTGGCTTCAAGACCTTACCTCCATCCCAGAGTTCAAAGCCAGCCtgcagaaggaaagagagaaatgggAGGCGATCCAAGAGAAAAACATTCAAGAGCATGTGTCTTCAGCAATACAAAATGCTGAAGACAAATGGCAGAAGATACTCAGTGAAAAATGTAAGGATCTTGAGGACTGTGTGAGCAGGAACCAAGAGTTTCAGGAGCAGGTGCACTCTCTGAACACACAGCTAGAGCGTTCCAGTCAGGAGCACGCCGCCCTGCTTAAAGCTGAGCTTTCTGCAGCCCGAGCCATGTGGAACAAAGACAAACAGCAGGAGATCTCATGCCTGAAGGCCCAGCTCCAGACTCAGCTGGAGAAAAACATAGAACAGGCTCAGGAAGAGGCCCTCAGACAAGCCCAGGCAAACCTACAGGTGATGCTGAGGAGCAAAGAAGAGGAATGGAAGAGTCAGCAAGAAATCAGGTTACGGGAAGAGCAGCAGCAAGTCAAAGAGGAGGTTTTTGCTGAGTTAAAGGAGGTGCTGAAAGAGGTTCAGGACATGAGCAGAGCAGTGTCTGAGGAGCAAGGCAGCAGGGAAGACTGCTTGAGAGCCAGACTCAGAGACCTGTGTAGAGATGCATTATCCAGAGCTGTGACCCACAGCAAGCAGGAATGGAAACAGAGCAGTGAGGATAAATTGAGACGAGTGCTAAAGGAAACTCAAGAACAACATGAAAAGGAACTCAGTCAAATACGAAGCACTTTGCTCCAAAGGAAGGAAGATGAGTGTAGTAGTAAGACCTGTTCTGAGACCACGGCTAAACTTCAGAAAAAGAGTCAGGAACTTCAGAAACACCTGGAGAAAGCCTGCCGCCAACTCCAGCATACTGTCCGAGAGCACAAGACCACTCTTCACAAACTGAAGGAAGAGCATGGAGAAGCCTTATCCAGGGAGAGAGAGGCCCATGCAAAAGCACTTGAGGATGTCAAACTTTCTGCACGCAAAGAATCATGCAGTACAGACAGTCAGCAAACTCTGCAAGCTGGCCTTGAAGAAATGAAGGAACAATATATGAAAGCTGTGCAAAAAATCAGAGGTGACATGCTGTGCTACCTGCAGGAGAGTAAAGAGAGGGCTTCTGAGCTGATTAAAGCAGAGGTCCTGAGAGAGAGGCAGGACACGGCTCGGAGGATGCGAAGGTACTACCTCACCTGCCTGCAGGAGCTACTGGAGGAAGGGGGGCAGACCACTGGCGCTGAGAAGAAAATCATCAATGCTGCTAGTAGACTGGCTGCCATGGCCAAAGTGTTGGAGACACCTGTAGCCAAGAAGAGACCTCAACGAAATCCAAATGGGCAAGAACCATCAATAAATGCAGAAACCTCTGCTAATGACCACGCTGCCAAAGTACCAGGTGGAGCCCAGAGCCAAAGCTTTCCTGTTGTAGCTGAGGTTCGTAAAGACTGCAGAAATGAACAAATCCATCACAGTTATTCTCTCACAACCCAAGCAGCCAGACCAAGAGGAATCGATCCTGCAGGCCCTCAAACTCAGGACTTCCTGTCTGTGAGACCAAATAGTGCTAAAACTCCTGTCCATATTACTCCATTGTCACTACATTCTCATAATCCCAAACTAATTGACGATGTTGGATCATCCTTCAAACGTAACAGTGATGTGAACAATGCAATTACAGTCAGAAAGCAGAGCAGAGAGATGTTCCTGACTGGAAGAGAATCAGGAAAAGCCAGCGATCATTTGACCCCTCATGTAGCTGTCGAGCCCTTCCTGATTGAAGAAGCGCCGGTAAGAGACGATGGCCAAAGTGACTGGAGTTTATCTAGTAATGGCTCCACATTTACCAATAACATCCATCTAACCTCCTCCTACTCAGGCAAAAATGCACAGCCGGCGAGGCCGTTCTCACTGATGAACCCATCAGTAGACAATCTGGACTTTGGAAGCTGTGTAGGTGATAACTCTGATGTAACCGTTTACAAAGAGATTGTTAAAAAGCCACCCTCTTTGAAATCCCAGCAGAGTGCAGGACTTAAAACGACCAAGAGCAGGGAGCCAATCCCAGGCTCTGAGGGAGAGAAGATCCATAGACTATGTCCCAAGAGTTTGTTCTCGGAATTGAAAATCTATCAGCAGGACAGTGGGTTTGACAGCCCTTTGTCCTTGATTCAGAAATGAAATGTCAGCTTTCGTGTATTggataatatgttttataagtgtgtgtgtgtttgtgtgttgactGAATATTCAGAAGTATTTATGTTTGAActgtgtttcagttttaaatactttttttactgtccttgttctgttctgtttttattaaagttttctaCCCCACTGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100354 lncRNA upstream 14046 18115583 ~ 18182105 (+) True G74477
TU100356 lncRNA upstream 16381 18177695 ~ 18179770 (+) True G74479
TU100353 lncRNA upstream 63292 18115583 ~ 18132859 (+) False G74477
TU100377 lncRNA upstream 72316 18120609 ~ 18123835 (+) True G74494
TU100347 lncRNA upstream 201018 17994594 ~ 17995133 (+) True G74471
TU100397 lncRNA downstream 226 18211912 ~ 18213361 (+) True G74510
TU100428 lncRNA downstream 160030 18371716 ~ 18375539 (+) True G74535
TU100578 lncRNA downstream 249758 18461444 ~ 18462636 (+) True G74654
TU100586 lncRNA downstream 266443 18478129 ~ 18479345 (+) False LOC103029914
TU100600 lncRNA downstream 322122 18533808 ~ 18534130 (+) True G74668
XM_007246529.3 mRNA upstream 502 18190011 ~ 18195649 (+) True cops2
XM_007246523.3 mRNA upstream 18736 18141081 ~ 18177415 (+) False atp8b4
XM_007246531.3 mRNA downstream 2423 18214109 ~ 18227746 (+) True LOC103027907
XM_007246532.3 mRNA downstream 215178 18426864 ~ 18430628 (+) True LOC103028223
XM_007246534.2 mRNA downstream 236622 18448308 ~ 18452812 (+) True LOC103028854
XM_007246535.3 mRNA downstream 236622 18448308 ~ 18452812 (+) False LOC103028854
XM_022671891.1 mRNA downstream 244907 18456593 ~ 18459147 (+) True LOC103026409
TU99974 other upstream 1907822 16286676 ~ 16288329 (+) True G74169
XR_002650242.1 other upstream 3275148 14891534 ~ 14921003 (+) False rpgrip1l
TU99159 other upstream 3546600 14648829 ~ 14649551 (+) True G73533
XR_002650241.1 other upstream 5298220 12871484 ~ 12897931 (+) False LOC103043719
trnar-ucg_4 other upstream 5592727 12603352 ~ 12603424 (+) True trnar-ucg_4
TU100573 other downstream 243165 18454851 ~ 18455197 (+) True G74649
TU100801 other downstream 871130 19082816 ~ 19085556 (+) True G74832
TU101007 other downstream 1316305 19527991 ~ 19533073 (+) False LOC103044129
TU101298 other downstream 1991933 20203619 ~ 20207922 (+) True LOC103028745
TU101630 other downstream 2811570 21023256 ~ 21025128 (+) True G75383

Expression Profile