RNA id: XM_022672236.1


Basic Information

Item Value
RNA id XM_022672236.1
length 4713
RNA type mRNA
GC content 0.46
exon number 12
gene id LOC103028541
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 18430338 ~ 18448555 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGACCCGCCGCCTTCTTGATGGCCTCGTCGGGCTCGAAGCTGTCAGCATCTACAACACACAGCGCAGCGGTTAGTGACCAGCACTGAAGAGATCTTATTTCACGTGGGTCTTTGAAAGCCAGTCATGGCTCTCAGGCGAGGCCAGGGTATCAGGGCCAATGTGCCTGAGCCTGACCAATCACCTGCACCAGAGCAGAGTGGGAGACCTTCCAAAGACAGAGAAGACTCTGAGGAACCTCACAGCAGCACAGTGGAGAGCCAGTCAAGCACTCCTGTCCCAGACAGCCTCTGTCCCAGTGATGGTTCTGTCTCCAGGGAGGACTCCCTCCGTGGCGAAAGCCCTATTCAGCCTGACAGCATGGAAGACTCACTGTCTGAATACGATAATGTAGGAtctgaggaggaggaagaggacgtggtagaggaggaggaggagcaggactATGAGGAAGACGAGGAGCTGCGTACCGATGCAGATGGGATGACATACTATGTTCACTGTTGCCCTGAGGATGAGAGCTACATGGAGGGAATGGACTGTCATGAAGGTGCTGATAGTGGCGACAGACCCAGCACTTCCAGGGATCCAGATGGTGTACGAATGCCAGCAGAAGCTTGGGCAAACTCTGAAGGCTTTTATGAAGTCCTGCAGCAGGGCAAAGAACAGATGATGTACAAATGTCCTGAGCCCATCTCCGAGACTGCTTTCATCCAAGCCCCCATGGCTGAGgatgaagaagatgaagaagaggcAGAGGAGGTagaagaggatgaagatgaggaggacgatgaggaagaggaggatgaggaagaagaagatgatAAGTATTTTGTTTATGAAGGAGAGAAGGCAGAGGAAGATCAGGATGAGTTTCCCTCCAAAGAGTCTTGTGATCTTCCAGAGGACAACAGAAACCTTCATCAGCGTTCAAGTTACACTCAAGAAAAGAtcagagaagaagaagatttACCCGGTGATTACAGGGGAGACAAAAGGCGGCCAGAGAACTGTAGAGGTGACAACCAGGGTTCATCTAGTGGCCATAGGGAAGGCATTAAAAAGGCAAATGCGGAAGAAAGAGTCAACTATCCAAGGGACTGTGAAGTGGGCAAGGCAGATAGAAATTTAAGACAAGGGTCTAGACTCAAAGGGCAGCAGACTTGGAAGGAAGACAGCGGCAACAGAGATTGCCCAGGAGGTAGCGGAGATAATGGAGCGACAAAACACGATGATCCTGTGAACAGAGCCGACTGTAAAAAGAGACATATGTGCAGACGACACGGCGAGGAGGAAAGAGAAAGCAGGCATTTACATATGGACAATGACAGTCCTGAGAAGTGTATAGGCAAGGGAAAGGGACTCACTCACAGTAATTATAGAGCAAAGGCCAGGAGGGATAAGCCACCCGCAGTGGACGCTGAAGGGGATGTGGACCAGATTGTTAATGGAGTACGAGCGAAATTGAAATTAGCACCTCAGAACACTAAAGCCGACAGGGGTGTAACTGGACAGTCACCTGACAAAAGAGGCATTCCAGACAGTTCTAAAACATCGTCGCTTTCATCACAGAAGGGAGAAAGTCGACCCAGAGCACCTAACACAGCTGTAAAGCCTCCAGACCCACAACTGCAAAAGGACCAGGCCAAAGCACCTGTAGAAGAGGAATGGAGGTCCAGTCAAGGCCAGATTGTTCAGAGCAGCCCACAGCACGGCACAGTGAACCCTAACACAGAAATGAGCAACCACAACCTCCCTCAGCAAGGAAAGAGAAATCCCTCTTTTCCAAGCTTTGTGGATGTTCCAGGTCCATGTGAACCAGAGGACCTCATAGATGGAATCATTTTTGCAGCAAACTACCTCGGCTCCACTCAGCTTCTGTCAGACAGAAACCCATCTAAGAGTGTGCGCATGATGCAGGCCCAGGAGGCTGTGGACAGAGTTAAGtgtCTGGATGGCGAGAGCCAGAGCCTAACTGAGGTTGACCTCTTCATTTCAACAAAAGCCATCAAAGTGCTCAATGCTGACACACAGGAGACGATGATGGACAACGCCCTCCGCACCATCTCCTACATTGCAGACATTGGGAGTGTAGTGGTGCTGATGGCCCGCAGACGCATGTCTCACTCTGCTTCATTGGACTGCACTGACACTGGGCTCAACACTGCAGAGGGCAGAAAACAGTACCGAATGATCTGCTACGTCTTTGAGTCTGAGGATGCCCAGCTCATTGCACAGTCCATTGGTCAGGCATTTAGCATGGCCTACCAAGAATTCCTGCGAGCGAATGGAATCAACCCTAAAGACCTCAGCCAGAAGGATTACAGTGATATTCTTAATACACAAGAAATGTACAATGATGATCTCATCCACTTCTCCAACTCGGAAAACTGCAAAGAGGTGAACCTGGAGAAGCAGAAAGGGGAGATCCTGGGTGTAGTGATAGTCGAGTCTGGCTGGGGCTCTATCCTGCCCACAGTCATCCTGGCTTGCATGCTGAACAGTGGGCCAGCTGCCCGCTCTGGGAAACTTAATGTCGGGGATCAGATCATGGCTGTCAATGACACAAGCTTGGTGGGCTTGCCGCTGGCCACCTGCCAAGGCATCATCAAGGGTCTGAAGAGTCAGGTGCAGGTAAAGCTGAGTGTAGTAAGCTGCCCACCTGTTACCACTGTGCTGATAAAGAGACCAGATCTTCAGTATCAGCTGGGCTTCAGTGTACAGAATGGCATAATATGTAGTCTGATGCGAGGCGGAATCGCAGAAAGGGGAGGAGTCCGTGTGGGCCACAGAATAATTGAGATTAATGGACAGAGTGTGGTCGCCATGGCACACGAGAAAATTGTCCATGCCTTGTCGGTGTCTGTTGGGGAGATTCATATGAAAACAATGCCAGCCGTGATGTTCAGACTGCTGACGGGACAGGAGACGCCAGTGTACATCTGACGGCAGTTCTGGTGCTCCGGACACTTTGTGGTGCTCTGTTCTGGTTCTGCGACCTCAAACAGTGCTTCACGTTTTCCCCCCAAGTCTTAATGTTCTGTTTGTGCTGGTTGTGTTTGTGTCCACCCAGGCTTACAAACAGAGCAATCTTGTTCTACACCTCTTAAATCAAGTAGCTTAACAGTTTAACCTCACCCAACAAAATGAGGAAACGAACTTCAGACCCATATCTCATTAGGCAGATATTCATTGCATGTGCAGGGCGTATGCGTCTATCATAGAACGACAAGAAAACACTAAAGAAAATATGATTATTCATTCACTGAGGCcaagttcacacagcaggtaaaagtagCCCAAATTCAATCTTTTTCGCCATATGTGttactgttgtgttttctgtgtggcagtgtgtaAGTGGATTTTTTATACATATCTGATATGTGGCATTTCGACTCAATCTGAGCAGCTGGATTagaacttgtgcaacttttacaCTAATCTCATTCAACATTTGTCATAAATGTGAACTGAAGAAATGCAAAAAATGGGTCACAGTAAAAATGGGTCATGTGAAGCATTGCTCATTTGCACAAGCTCATCATTTGGTGATAACAtcggatttgggccacttttaccctCTGTGTGAACATAACCATAGTTTGGCCAGGTTTATTCAGAGAAGATGgacacaatataaaacaataagatGCCTTGTATTGTCTTAAACTAGGGGAGGTGAATAATAACTAAGAAAATGAGCAATACCAGTCCTTCCACTCTTTTTGTTGCTGTAGATTTCTCTCTTTAGGCTGGTTTCAGCAGTTCTCTTTCTTAGTCTAAGAGGCAGTGAGTGCATGACCAGTGCATGACCCTCATCTGTGTTCCATGCAGGTGGGCTGGAGCTAACAGTATACGACTAGATCGTCTAGCTTGTCAGTCCTAGTAAACGTGTTGCTCCATCCATCTGCCACTTGCTCTGcacatgattatttttttatcagaacAACGCAGATAGtggcatttattttttaacaatgtaCATAGTATTCCTGGTTTGACTGTATATTTCCTGTTTATCAGCTGGTTTGTAATGATAGGGGCTAGATATCTATGCAGGTTCATCAGATGTGGGTTCATTAACTATTAGCTCATTTCATATTGCTGTAGTCATTAGGGTGGGATATGCTGAATTCCAAAGATAATGATGTATTCCAATTACAAAACACATGATTATGGTGTAACATCAACACGTAACCACGAGGGGACTGTATCGATTTTATTGACTAAACTAACTTGCCCCTCAAATGCAGATGAAccattttgtaattatttttatcatcATATTTTAAAGAGGTTTTACACTGGGGACCACTAAACACATTCATTAGTTATAATACTCTGACAGCTGACAGTATTTTACAAGAAATTAAGAGAAGCTCTTTGGGTCTGTACTACtaacattaaacacaacacCGGAATAgattttttaggttttattagTTTAGTCTCTGTAAACAACATATTTCATACATATTCAGTTATTATTCTCAACTCAAACgtgtttatttacatatttacacagtTATGAATTCacagataaaacataaaaaatgtttacagttGTATTTACAGCTACcccagcaaaaaaagaaaaatccagtCTGCAGGATGTGTGTTTTTCAAGTACTTGGAATGATGGCCTTGTGTGAAACAGTTGGATTCTCAAAACGTctgtaaacaaattaaaaaagcagTCATTACATTCAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100560 lncRNA downstream 79402 18350631 ~ 18350936 (-) True G74640
TU100508 lncRNA downstream 202662 18218289 ~ 18227676 (-) True G74599
TU100453 lncRNA downstream 564200 17857313 ~ 17866138 (-) False G74556
TU100451 lncRNA downstream 567597 17845126 ~ 17862741 (-) True G74556
TU100308 lncRNA downstream 616373 17805335 ~ 17813965 (-) True G74447
TU100649 lncRNA upstream 153422 18601977 ~ 18607745 (-) True G74704
TU100659 lncRNA upstream 164821 18613376 ~ 18614926 (-) True G74711
TU100664 lncRNA upstream 180506 18629061 ~ 18629405 (-) True G74716
TU100683 lncRNA upstream 188708 18637263 ~ 18640185 (-) True G74735
TU100688 lncRNA upstream 200884 18649439 ~ 18649771 (-) True G74740
XM_015605114.2 mRNA downstream 4244 18406321 ~ 18426094 (-) True duox1
XM_022672225.1 mRNA downstream 54684 18228352 ~ 18375654 (-) False LOC103025779
XM_007246536.3 mRNA upstream 12820 18461375 ~ 18468113 (-) True parp16
XM_007246544.3 mRNA upstream 170581 18619136 ~ 18625195 (-) True dld
XM_022671893.1 mRNA upstream 521857 18970412 ~ 18973313 (-) False LOC103034129
XM_007246550.2 mRNA upstream 521857 18970412 ~ 18973144 (-) True LOC103034129
XM_007246627.2 mRNA upstream 526753 18975308 ~ 18977165 (-) True LOC103027908
TU100498 other downstream 400591 17982747 ~ 18029747 (-) True G74591
TU100463 other downstream 546552 17877026 ~ 17883786 (-) False nrg4
XR_002650248.1 other downstream 2651915 15761764 ~ 15778423 (-) False LOC103046265
TU99163 other downstream 3884900 14542209 ~ 14545438 (-) False LOC103025073
TU98709 other downstream 5808982 12610834 ~ 12621356 (-) True G73172
TU100745 other upstream 490619 18939174 ~ 18940464 (-) True G74791
TU100809 other upstream 622383 19070938 ~ 19072888 (-) True G74838
TU101215 other upstream 1411139 19859694 ~ 19865982 (-) True G75100
TU101358 other upstream 1578607 20027162 ~ 20032027 (-) True G75207
TU101364 other upstream 1638863 20087418 ~ 20100250 (-) False hsd17b12

Expression Profile