RNA id: XM_007246534.2


Basic Information

Item Value
RNA id XM_007246534.2
length 1928
RNA type mRNA
GC content 0.39
exon number 8
gene id LOC103028854
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 18448308 ~ 18452812 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGGTTTCTCGTTTCACTCTTATCAGTTTCAGTGGCGCTTGCAAGATGGCGGAGGGCGATTCTTGGGATGCTGACAGCTTCGAGCCCGACGAGGCCATCAAGAAGGCGGCGGGTCATGACAAGTGGGAAGGcgaggatgaggatgatgatgtgAAAGATAACTGggatgatgaagaagaggaagatgaaaAGGTGACAGAAGCAAAAGCAGAGGTAAAGtctacagaaaagaaaaaacttaGCGATAAAATCAAGGAGAAGGAgaatttacaaaagaaaaaacaagaggaGCTTCGAAAGAGGTTAGAGGAATCAAATGACAGCACAGAACTCACACCAGAGGAGGATGAATTAGCAGAAAAACTTAGAGTGAAGAAGCTTCAAGAGGATTCAGACCTGGAACTAGCAAAAGATGCTTTTGGCATTGTACCAAATAATGTAACTGGAATTGATGCCATGAGCCCTTCCTCAAAAGATGACTTCACAGAATTTGAAAGGttactgaaagaaaaaataacatcatatgAGAAGTCAATACACTACTCCAGCTTTTTAGAGTCACTGTTTAGAGACCTGTGTCTTTCATtgGAGGTTGAAGACTTGAAGAAAATTAACAACTCACTCACAGTGTTACTCAGTGAGAAGCAAAGACAAGAAAAGCAGCAGAATAagggaaagaagaaaaagaaaggagttTTACCAGCAGGTGGTTTAAAAGCCAAGATGAAGGATGACCTTGCTGACTATGGCGAGTTTGATGGAGGTTATGTACAAGACTATGAGGACTTCATGTGACCCCGGCCTCTTGAGCCATCATATTTCTTGATTGCTGAAACACACACCTTTACAGCATGACCTCTCCCTACAGCCAGACCCACTTCCAGAGCCATGCTAGAAAACTGAACGTCATCCCATGTAACGCACGCTAGCCTAAGCTTAAGTGGTTTATGCTGGGAAAGATTTCATCGACGGTATGTTTCTCTGGTTTATATTGACTGTAGGTCAGTCCAATGTATGCAGGGAAATAAGAGTAATGTCCGTTTAAACGTTGTGGCCAGCAAGTTAACATGAATACTGACAGAACCAATGAACCAGCAGCTACACTTGAGATTGGATCGACATGAAAGGATCGACAGTATTACCGTTTGAAACTGCTACAACTTGGAAATAAATATGACATTCTATGCAAAATTTCATAAAATGTCTATATGTCATGTATTTTGATTACATTTAAACTAGCATTTCTGAGAAGGTTGCCCTTGTATTGTTACAAAATCAAGTATCAGGCTGCTCTCTGCTCTTGCTAATAAAGGCAAATCGTAATGGTAGTGATTGTCATTATAAGCAGTCACATGCTTGTTAAAGCTGTGTACACAGTCGGTTTCATTTTCCTATTCCTAAGTGATAGTGTATCCTTTTCTTTAGACGCATTGAGCCTGACGTGTTTAGTGTTCTGTACTGAATCTGATAAAAGTGCATCTCCCCCTGCAGAAACAGCAGTTAAGGAATGCATTCCATGTAAATCACCAAACTTAAGTTAAGGAGCTATAATTTGCACCACAGTTACAATAGTTCATGCTGTACAGTGCATCTTAGTTTTGCAGAATACTTCTTTGACATGTCATGATCTGAGTTTATGGACATTATGTTAACTTTGCAGTTTAACAGGTTTTCTTTCTGCTCAGTGTTACTCGTTTGACCATAACCATGCCAGAGGGGATGATATGTTACGGAAGAATATAAGAATGTTAGTATGGGTACTTTGCAAAGGACCAAGAGTCTCTAATATGTATTCAGGTGGTGCTTTGAGTTTCCATTTTCTAAAGTAAGCAGATCTGCTTAATGAAGATTTAACGTAAGCAAAGCAAATAATAGGATTCTGCAGTGTTTTATAAACatctaatttaataaaagtcCTCAAAAAGTAAA

Function

GO:

id name namespace
GO:0001731 formation of translation preinitiation complex biological_process
GO:0006446 regulation of translational initiation biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03245 EIF3J; translation initiation factor 3 subunit J

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100428 lncRNA upstream 72769 18371716 ~ 18375539 (+) True G74535
TU100397 lncRNA upstream 234947 18211912 ~ 18213361 (+) True G74510
TU100354 lncRNA upstream 266203 18115583 ~ 18182105 (+) True G74477
TU100578 lncRNA downstream 8632 18461444 ~ 18462636 (+) True G74654
TU100586 lncRNA downstream 25317 18478129 ~ 18479345 (+) False LOC103029914
TU100600 lncRNA downstream 80996 18533808 ~ 18534130 (+) True G74668
TU100608 lncRNA downstream 172259 18625071 ~ 18626410 (+) True G74672
TU100662 lncRNA downstream 174837 18627649 ~ 18628028 (+) True G74714
XM_007246532.3 mRNA upstream 17680 18426864 ~ 18430628 (+) True LOC103028223
XM_007246531.3 mRNA upstream 220562 18214109 ~ 18227746 (+) True LOC103027907
XM_022672223.1 mRNA upstream 236622 18196151 ~ 18211686 (+) False cep152
XM_022671891.1 mRNA downstream 3781 18456593 ~ 18459147 (+) True LOC103026409
XM_007246538.3 mRNA downstream 17892 18470704 ~ 18478934 (+) True LOC103029914
XM_007246539.3 mRNA downstream 31642 18484454 ~ 18496455 (+) True LOC103030240
XM_007246540.3 mRNA downstream 53794 18506606 ~ 18513315 (+) True ubl7
XM_007246542.3 mRNA downstream 61935 18514747 ~ 18524175 (+) False LOC103030871
TU99974 other upstream 2159979 16286676 ~ 16288329 (+) True G74169
XR_002650242.1 other upstream 3527305 14891534 ~ 14921003 (+) False rpgrip1l
TU99159 other upstream 3798757 14648829 ~ 14649551 (+) True G73533
XR_002650241.1 other upstream 5550377 12871484 ~ 12897931 (+) False LOC103043719
trnar-ucg_4 other upstream 5844884 12603352 ~ 12603424 (+) True trnar-ucg_4
TU100573 other downstream 2039 18454851 ~ 18455197 (+) True G74649
TU100801 other downstream 630004 19082816 ~ 19085556 (+) True G74832
TU101007 other downstream 1075179 19527991 ~ 19533073 (+) False LOC103044129
TU101298 other downstream 1750807 20203619 ~ 20207922 (+) True LOC103028745
TU101630 other downstream 2570444 21023256 ~ 21025128 (+) True G75383

Expression Profile