RNA id: XM_007246539.3


Basic Information

Item Value
RNA id XM_007246539.3
length 2353
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC103030240
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 18484454 ~ 18496455 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gagagagagagtgaaggaaaaaagagagtgagggagagagagagctgcttgGAGCTGTTtgagctggaactgctggagaTGAGAGATTCACTCACTGTACAGCACAGAGCACAGACGGAGCGCAGCAgaagcacacacactctcagcagcctcttctgGACGCCGGAGCTCGGACTTGGACAGCTTGGAGAATGTCAGCCCTGGTGCCCTGCCACAGCTCTGAGAGGACGGAGGCTGGAAGTGATGTTTCTCTGAAAgtgtagcagcagcagcctgtttggaagtgagcgttgtgatggTTTCTACCCAGAATCTGTGATGTTTTGCAAGGAGGCAGTTCATATGGGACACACTCAGCCTCTCtcagcctgtctctctctctctctctttttttctctgctggATTCCGTTTGTGGCTTCATCTCCACGCTTTCAATCTACTTGAAGAAGCATGACTGGATATGTAGCGGCTGAATTGCTGTGAGATGGGTTTTCAGCTCCTGCTTGCAGGAAAATATATTCACTGGTACAAGTCTGTGAGTACAAAGACTGCATAAGGTGCTGAACCAAGCGTTACTTTTGGTGCTGCTCTCAGTCCAACCAGAAGACCCCAAAACTAATTTCTCTTCTTACAGGCTTAGCCAAATGGGAACTTTTGTCAGTTATGCTGATTTCTTATCACTTATCTCTCtctgatttaaaatgatttaaacatcTCATCCAGGATTATCATCACTTAAACTGCATGACTATTTTTTAGACTCACCTTAAAAGGCCTTATCTGAGGACTTAttcattaaacaatatatatcattcattaattactgcaaAACATCCATGCTGTAGAAATGGAGGAGTGAGGAGATTCACACTTTTTGGGCAAATAATATCCTTTACAAGACTGCCTATGTTAccacaaacaaaagaaacagtgtaaatgtactcTCAAATGCACAAGACCAGGTCGAGTAGTGTCCCTTAGAAGCCTGAAAATCTACTAGAAAGGAAGAAAggagtacaaatctgtactttaaCAAAAGGTTCTGAAGACATACCCTTAAGGTTACCACCCCAGGGACAAGAGGCGTACCACCACAATGACAGTTTTGTATCTATTTTTGCTAAGAGTGTCTTCcagtgctgaaaaatgaaaaatatccGTATCTATGActgccaagccaagccaagttATGTAAGGGGTCCCATGCTGGAACCTGGTTACATCTGACTATGTTCATAATGACCACGGCTCACAACTGGATGGCCACTGTGACTCCAGGGGGCTTCAGACATGAAGCACAGTACCCTCTGCCCTGCAGGCTGCTGGTGTCTCTGTGTCCAGGATGTTCCAGAGCACTCTGCTAGTACCCCTAAACCTGACTGACGGTCCGGATCGCAGGCAGTGCATCCGCAGCCACATCAGGATGGTAATGGAACAGTTGGAGGAGGTTCTGATTGAACTGAAGGATGTGGCAAGAGAGCTCCGTGAgGTAGTGGCTCAAATTGACAAACTGACAGCTGGCATTGATCTGGACGCAGAAGACGATGCTGAGGAGGACAAACTGACCCTGGCttgcagcagtagcagcagcgaGAGAGCCCTGGGGGAACTTTTCAAAGCTGAGGCTTTTTCTAATACCTGCGACCTGCATCATTTACTGTACAACCCGCTCCTGGACACTGCTAAGAGACAAGATACAGCCCTGCATCGGCGGAGCTGCGGGGACTTACCTGCTCTAAATGGACCTATGAAGGCCCCCTACAGTCCAAAAGCTTCTTGGCTCTTTGGCAGTGGGGAGAAAATCCACCACTGTGATAAAGCATCGTATCACGCGTTATGCTGTGACGATGACGACTTTGATGAAGAGAGTGGAGGCAGGAGATCCTCCAGATTCTCCTCCAATGACTCTGTGTTTTCCTCTTCTCCACCGCGGCCTCTGAGAGTCGAGGCCTTGACACCCCGATCTGCACGAAAATGTCACCTCAGCCCAGGCTCGAAGAAAAAAGCTCTGCGGAGCTGCAGCACTCAAACTGTTTCAGATAAGAGCACACAAACTCCATTCCCATACAGCCCTGCCCGGCAAAGAGCTTCAAGTGACTACAAGCactaaaaaaattcaaacagtccACTGCTCACCTGATACCACTTTTAAACTGTGCAagacatatttataaaaaaaagatgtaatgTTAAATATAGTAGAAATGCTTAATTGCACATTGACTTCTTGCTAATAAAATCATGCACTTGGCTGTTAAGTTTTTGTAGCTGCAGTGTTAAAGATGTAGCAGCTTTCCTTTGGTTGAAATACAATATCCCATTTCTGAAGTAATAAATCTCCTCTGGCCCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100586 lncRNA upstream 5109 18478129 ~ 18479345 (+) False LOC103029914
TU100578 lncRNA upstream 21818 18461444 ~ 18462636 (+) True G74654
TU100428 lncRNA upstream 108915 18371716 ~ 18375539 (+) True G74535
TU100397 lncRNA upstream 271093 18211912 ~ 18213361 (+) True G74510
TU100356 lncRNA upstream 304684 18177695 ~ 18179770 (+) True G74479
TU100600 lncRNA downstream 37353 18533808 ~ 18534130 (+) True G74668
TU100608 lncRNA downstream 128616 18625071 ~ 18626410 (+) True G74672
TU100662 lncRNA downstream 131194 18627649 ~ 18628028 (+) True G74714
XR_002650255.1 lncRNA downstream 206266 18702721 ~ 18703887 (+) True LOC111193102
TU100720 lncRNA downstream 461183 18957638 ~ 18970866 (+) True G74770
XM_007246538.3 mRNA upstream 5520 18470704 ~ 18478934 (+) True LOC103029914
XM_022671891.1 mRNA upstream 25307 18456593 ~ 18459147 (+) True LOC103026409
XM_007246534.2 mRNA upstream 31642 18448308 ~ 18452812 (+) True LOC103028854
XM_007246535.3 mRNA upstream 31642 18448308 ~ 18452812 (+) False LOC103028854
XM_007246532.3 mRNA upstream 53826 18426864 ~ 18430628 (+) True LOC103028223
XM_007246540.3 mRNA downstream 10151 18506606 ~ 18513315 (+) True ubl7
XM_007246542.3 mRNA downstream 18292 18514747 ~ 18524175 (+) False LOC103030871
XM_007246541.3 mRNA downstream 18293 18514748 ~ 18524175 (+) True LOC103030871
XM_022672239.1 mRNA downstream 39419 18535874 ~ 18575367 (+) True LOC103026700
XM_022672238.1 mRNA downstream 81334 18577789 ~ 18615121 (+) True LOC103026996
TU100573 other upstream 29257 18454851 ~ 18455197 (+) True G74649
TU99974 other upstream 2196125 16286676 ~ 16288329 (+) True G74169
XR_002650242.1 other upstream 3563451 14891534 ~ 14921003 (+) False rpgrip1l
TU99159 other upstream 3834903 14648829 ~ 14649551 (+) True G73533
XR_002650241.1 other upstream 5586523 12871484 ~ 12897931 (+) False LOC103043719
TU100801 other downstream 586361 19082816 ~ 19085556 (+) True G74832
TU101007 other downstream 1031536 19527991 ~ 19533073 (+) False LOC103044129
TU101298 other downstream 1707164 20203619 ~ 20207922 (+) True LOC103028745
TU101630 other downstream 2526801 21023256 ~ 21025128 (+) True G75383
TU101641 other downstream 2592167 21088622 ~ 21096906 (+) True G75391

Expression Profile