RNA id: XM_007246541.3


Basic Information

Item Value
RNA id XM_007246541.3
length 3024
RNA type mRNA
GC content 0.42
exon number 11
gene id LOC103030871
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 18514747 ~ 18524175 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAACTAATACACTGGGGATTAAAGTCGGTCTTATGGTTCCGCCACTGGTTTACGGCGTGTCTACACACGGTACagcagcgctgtgtgtgtgtgtgtgcgcgcgcgtgtgtgtttgagagtgtgagagagagtgtgagtatgGTGAGCGGTTTATTTATTAACCTCAGCTCTGAGATAAAGTGAAGTTTTAGAGGAGCAGAGCTGAACTCAGTTCAGAGAGACTCTTTCAGCTCCTGGCGTTAGAAAGAAGTTGGTTTGTTCTGTGCTTCACTCCAGCAGTAGAATGGCCGGGATCAGACACTGTCCTTTACTCTCTGTGCGTCCTCTCCGCTGTCTGGTGGATGAGAAGTTCGAGGTAGTTGTGCAGTTTTTGCTGCCCAGTCAGCCGGTGACTCTGCATGCACTGCTGCAGTCGGAGGACGGGGACTTCTGGGAGGCGTTTGGTCATTACAAGGGTGATGCATCCGGATCTGTCAAAGTGTCTGAAGATGTCAGTCTTGGTGGATCGTATGATGGACTTGAGCCCATGGGCCTGCTGTGGAGTATGAGACCAATTCCTGGAAGCAGAAAAGGCCTCAGatttagaAACAAGGACGTCTTCAAGCCCATTGAGGTGCACATATCTGTGTATGAAGGCCATCTAACCAAGTGGTTCAAAGAAAAACAAGCTCTAGCCTCTGTTGTAGCTGAGCGATGGTACAGCAGTCCTGGAGTGCAGAGGATTGATGTCAGGGAGAAAGGGTTAAAGGGGACCCTTTTCATACCTCCAGGTCCTGGCCCGTTCCCTGCTGTGCTGGACCTCTGGGGTGGAGGAGGTGGGCTGGTGGAATATCGCTCTGCTCTGCTGGCCTCTCATGGCTACATCACATTAACTCTGGAGTACATTGGACTTAAGGATGCTAGTGGAACACCACAAAATGTGGACAATGACTACTTTGAGGCTGCCTTTAGTTTGTTGAAGCAACATCCGCAGGTGTGTCCTGACAGAATAGCCATGATGGGCTTGTCGTTTGGTGTGTCTGTGACTCTTGGCATGGCAGCGTACTCCTCAGAGATCAATCCcaaatgtgtagtgtgtgttagtggaaGCCACATTATGCCTGTAAATGGATCATTGGCTGATGTCTTTAAAGAGATCAAAAAgaatgtCAAGAACACTCGCTATGATGAAGAGCGGAGAATCATTTGGCGAGATCTGCTGCTGCCGATACCAGACGACCCTTCAAAGAAAGTTGAAATGGGTCTTATCCAATGCCCTATTTTACTGATTGTTGGTGAGGATGATCAAAATTGGGCAGCAGCAGAATCTGCAGAAGATATGAAGAAGATGATGGAGCAAGCTGGGAATAGTCACCTGTTGACTGTGCTTTCATACCCCCACACTGGTCATCTCATTGAGCCTCCCTACTGCCCTCATGTCCGATCCAGCAACTTCAAATTGATAGAGGCAAAGACTACAGtggtggtggtgtggggaGGACAAATGGTACCACACAGTAAAGCTCAGGAAGATTCCTGGCAAAAAACCCTGGCCTTTCTGGAGCAGCATCTCTACACCCATGACACTGTAGCATCCAAATCCAACTAGTGAAGAGAAAACATGCCATATATTGCACTGTAAAAAAGTAGCTTACAAATTAAGGATctccatcatttttttcttttagacaGCTTCATGACAAAACCGCCTTTAGGTCGTACTGCTACTAATCacctatgattttttttttattataattttatttctaatttttcccattttctccccaatttacacagccaattacccaacccactcagtaTGACTCcttctatcactagtaatgcaccaacacaccaggagggtgaagactaacacatgcttcctccgatacatgtggagccagccaccacttctttttcgagctgctgctgatgcagcattgccgagcagccagttttagctttagaaaaaatatatttcattttcttaACCTACACATTTCAAGACATTACATTACCAATCAAAATGTATCTTTTACAGACAATCAAACAGTAGCTTAACCTCTgccatcacatcacatcagaaTATAGATTCAGCACACTGGCATGGCAGCACTTTAGCTACAGAGGTAAAGGTTGTTTTAACTCTTAATAATGACTATACATTTCTTTCTACACAAAAGTTTCTAAATGATTGATCATTACAGTGGACAGTGTATTATTCAGGCTGGTTCTTTTTGTACTGCTTGTTCTCTGTAATTATTGTATTACAAACAAATGGCACACCAGGTAGAATAGGCTGAACAAGATCTAAAGTACTTGGATTACTTTACAGAATTAACAGAGGAACAGCTTGTAaagatgtgaaaaaaatattttaataggaATTTTGaatttaatgattattattttgtaattacatgttgGTCTTCAGTTGACTTAtgttaaatatagtttaatttttCTTGTTAATGattaacattttacataaagTTGGAGATCATACAGAGTTCATACAGAGTACTGACACAGTTCATGGTTCATGTTTATGACCCACAATGCAAAGGTCAGTGACACAAGATTGTAGCTCTGGGTGTAATGACCTCAAATCAGTATCACAATTACggttcataaaataaatatttaatgaatgacacacacagcttttttttttggaggaagCTGCTGGAGTTGATCAGTTGGCTCAAATTCTTCTGTAGGTTGCTTTCATGAACACACACAGTGGGAAAATCTTTAAcagaatttaaaaacaaaagagtAATCGATATGGGCAAGAATAAAGAATACAGGGGTCCTGAAAGTCTCCCAGCCCTACAAAAGCGGCATTAATATGAAGCGGCAAAAGCTTCTTGAATGCTAATAGCATGTGTGTAAAATCTTCAGCCTGCTAAACATGCAATTCTACATGTCTCTAACATGCTCACCATCTGAAAAGCCTCCatattttgttaataaaattGTGTCCTGCGACTTTTTACTCGCCCTGTAACCTGCACACCttttataaaaatctaaattgtg

Function

GO:

id name namespace
GO:0006637 acyl-CoA metabolic process biological_process
GO:0016790 thiolester hydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100586 lncRNA upstream 35403 18478129 ~ 18479345 (+) False LOC103029914
TU100578 lncRNA upstream 52112 18461444 ~ 18462636 (+) True G74654
TU100428 lncRNA upstream 139209 18371716 ~ 18375539 (+) True G74535
TU100397 lncRNA upstream 301387 18211912 ~ 18213361 (+) True G74510
TU100356 lncRNA upstream 334978 18177695 ~ 18179770 (+) True G74479
TU100600 lncRNA downstream 9633 18533808 ~ 18534130 (+) True G74668
TU100608 lncRNA downstream 100896 18625071 ~ 18626410 (+) True G74672
TU100662 lncRNA downstream 103474 18627649 ~ 18628028 (+) True G74714
XR_002650255.1 lncRNA downstream 178546 18702721 ~ 18703887 (+) True LOC111193102
TU100720 lncRNA downstream 433463 18957638 ~ 18970866 (+) True G74770
XM_007246540.3 mRNA upstream 1433 18506606 ~ 18513315 (+) True ubl7
XM_007246539.3 mRNA upstream 18293 18484454 ~ 18496455 (+) True LOC103030240
XM_007246538.3 mRNA upstream 35814 18470704 ~ 18478934 (+) True LOC103029914
XM_022671891.1 mRNA upstream 55601 18456593 ~ 18459147 (+) True LOC103026409
XM_007246535.3 mRNA upstream 61936 18448308 ~ 18452812 (+) False LOC103028854
XM_022672239.1 mRNA downstream 11699 18535874 ~ 18575367 (+) True LOC103026700
XM_022672238.1 mRNA downstream 53614 18577789 ~ 18615121 (+) True LOC103026996
XM_007246625.3 mRNA downstream 108128 18632303 ~ 18634947 (+) True LOC103027288
XM_015605105.2 mRNA downstream 113069 18637244 ~ 18644079 (+) True LOC103032021
XM_007246546.3 mRNA downstream 129101 18653276 ~ 18668460 (+) True LOC103032349
TU100573 other upstream 59551 18454851 ~ 18455197 (+) True G74649
TU99974 other upstream 2226419 16286676 ~ 16288329 (+) True G74169
XR_002650242.1 other upstream 3593745 14891534 ~ 14921003 (+) False rpgrip1l
TU99159 other upstream 3865197 14648829 ~ 14649551 (+) True G73533
XR_002650241.1 other upstream 5616817 12871484 ~ 12897931 (+) False LOC103043719
TU100801 other downstream 558641 19082816 ~ 19085556 (+) True G74832
TU101007 other downstream 1003816 19527991 ~ 19533073 (+) False LOC103044129
TU101298 other downstream 1679444 20203619 ~ 20207922 (+) True LOC103028745
TU101630 other downstream 2499081 21023256 ~ 21025128 (+) True G75383
TU101641 other downstream 2564447 21088622 ~ 21096906 (+) True G75391

Expression Profile