RNA id: XM_022671893.1


Basic Information

Item Value
RNA id XM_022671893.1
length 1554
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC103034129
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 18970412 ~ 18973313 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agacgGTGTTCAGCATAGAAATACATGGAaacatggaaataaaataaaATCCAGTTTGCTGTTGAGCAACTAGTGCTGGGACTTTAACTTTTTGgtGCTGATGAACCATAACATGATGTTCTTTAGTAACTTGATGTATGCCCATTACTGCTGGACTGTGATCACTGCTTCTCTGATGCCAGGTTtcccttttgtgtttgtgtggaatGCTCCTACAGAACTCTGCAGGAGTCGATTTAGCTTTGAGCTAGATCTGTCTTACTTCCAAATTGTGAGCAGCACATTAAAGACAGCCACTAATCAAAGGGTCTCCATCTTCTATACTGACCGCTTTGGCATCTTCCCTTATGTGGACAAGGAGAGTGGAAAGCATCATGGCAGTGGTCTTCCACAGCTGATTGATTTCACCAGGCACTGGGAGCTGGCTGAGGGGAGCATCATCTTCTATATTCCTGAGGATCAGCCTGGCCTGGCTGTGCTGGATTTTGAGGAGTGGAGACCACAGTGGGTCCGAAACTGGGGCAACAAATATGTTTACAGGGAGCAGTCTATTAAAGCCATCATGCAGAAGAACCTCTCTCTGTCCTATAAAGAAGCACACGCGTTAGCAGTGATTGCGTTTGAGAAGGCAGCAAAGGAGTACTTCCTCCAGTCCTTGAGCCTTGGAAAGAAATTGAGGCCTTCACGTAAATGGGGCTACTACCTGTATCCTGAGTGTTATAACTATCACTACAAAAACAACATGGATCTTTACACAGGAGAGTGTCCAGAAATTGAAAAGCTGAGGAATGACAAGCTGCTCTGGCTTTGGAATGAATCTACCGCCCTctttccatccatctatctggaGCTTGCACTACAGGAGTCCCATCAGGCAAAGCTTTATGCTCGTCACAGGGTTCAGGAAGCCATGAGGGTTTCCAAACTCTCAAACAGGAGCTCTGCTGTTCCTGTTTATCCATACATTCGCCCATGCTTTAAAGACCGTGATGTCAACTACCTGTCTGAGtATGACCTGGTCAACACTGTAGGTGAAGCTGCTGCTTTAGGAGCTGCTGGGGTCATCTCATGGGGTGATATGAAAATCTCAAATTCTGagGTGTCCTGTGCAGCTGCAAAACACCACCTAAAAGAAGTCATGAACCCATACATCTTAAATGTGACCACTGCCACACAGCTGTGCAGTGAAGCCCTGTGTCAGGGTAAGGGCAGGTGTGTGAGGAGGATCTGGGACAGTGGAGAGTATCTTCACTTGTCTCCACAGAGGTATCAAATCTACAAGGACAGCACGAGTGGGCTGTTTGTGAAGGGTCAGATCTCACAGGAGGACGTCGATTGGTTTCAGGAGAGGTTTGACTGTGCGTGCTACACAGGGGAGCCGTGTTATGCACCTCTCGCTCTGAATATTGTTTCCAGGTTTACCTATAATGATGGTTTGTCTTTGTCACACTTCACGATGGTACAATGGCTGGCCTATGCACTGACCATTACATGGATTGTTGTGATTTGTTGATTTGTTGAAGCACTTtcaagataataaaaaaaaactttaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100756 lncRNA downstream 2502 18960804 ~ 18967910 (-) True G74796
TU100748 lncRNA downstream 20296 18948629 ~ 18950116 (-) True G74792
TU100688 lncRNA downstream 320641 18649439 ~ 18649771 (-) True G74740
TU100683 lncRNA downstream 330227 18637263 ~ 18640185 (-) True G74735
TU100664 lncRNA downstream 341007 18629061 ~ 18629405 (-) True G74716
TU100767 lncRNA upstream 10882 18984195 ~ 18986193 (-) True G74804
TU100779 lncRNA upstream 19510 18992823 ~ 18994884 (-) False LOC103034453
TU100915 lncRNA upstream 306339 19279652 ~ 19341936 (-) True G74910
TU100920 lncRNA upstream 314027 19287340 ~ 19290287 (-) True G74915
TU100940 lncRNA upstream 352079 19325392 ~ 19418804 (-) True G74928
XM_007246544.3 mRNA downstream 345217 18619136 ~ 18625195 (-) True dld
XM_007246536.3 mRNA downstream 502299 18461375 ~ 18468113 (-) True parp16
XM_022672236.1 mRNA downstream 521857 18430338 ~ 18448555 (-) False LOC103028541
XM_007246533.3 mRNA downstream 523449 18430338 ~ 18446963 (-) True LOC103028541
XM_022672235.1 mRNA downstream 523796 18430338 ~ 18446616 (-) False LOC103028541
XM_007246627.2 mRNA upstream 1995 18975308 ~ 18977165 (-) True LOC103027908
XM_022672242.1 mRNA upstream 5535 18978848 ~ 18987058 (-) False LOC103028224
XM_022672244.1 mRNA upstream 5535 18978848 ~ 18986645 (-) True LOC103028224
XM_007246551.3 mRNA upstream 19355 18992668 ~ 19008366 (-) True LOC103034453
XM_022672245.1 mRNA upstream 50377 19023690 ~ 19046218 (-) True LOC103035727
TU100745 other downstream 29948 18939174 ~ 18940464 (-) True G74791
TU100498 other downstream 940665 17982747 ~ 18029747 (-) True G74591
TU100463 other downstream 1086626 17877026 ~ 17883786 (-) False nrg4
XR_002650248.1 other downstream 3191989 15761764 ~ 15778423 (-) False LOC103046265
TU99163 other downstream 4424974 14542209 ~ 14545438 (-) False LOC103025073
TU100809 other upstream 97625 19070938 ~ 19072888 (-) True G74838
TU101215 other upstream 886381 19859694 ~ 19865982 (-) True G75100
TU101358 other upstream 1053849 20027162 ~ 20032027 (-) True G75207
TU101364 other upstream 1114105 20087418 ~ 20100250 (-) False hsd17b12
trnat-agu_2 other upstream 1922790 20896103 ~ 20896176 (-) True trnat-agu_2

Expression Profile