RNA id: XM_007246553.3


Basic Information

Item Value
RNA id XM_007246553.3
length 3108
RNA type mRNA
GC content 0.47
exon number 10
gene id LOC103034777
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 19056787 ~ 19081399 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TACTGTAGGTTTTAGGGACCGCTATCCCGCTTTATATGAGCCGGTGTGATCCGGGGTGTTGGTGTAAATCAGCCGGTGATGAAAGTAGTTTCACATTGTGAGGATTAAATATTTTGATTTCTGCTGATTCAAGCCCCCCTTTGGCCGAGTGTTGATCGGCTTGCCCGCCCCGCTGCCATGTTGGATTGAGGGATCGTGTTTGCTGTGGGAGTTGGAGATGAAAGTTTATATTGTGCAGTTTGGCGATTATTGACGCCTGCAAAGTGCGGTCCTTTCGTGGAAGTAGAGGATTGGTTTCTGGGGGGCCTGCGCAGGGAGAAAACACGCCGGTGGTCtctccttgtgtgtgtgtgagagtgtgtgtgttaggaatGCGGGTTCCAGGATGAGCCGAGTGCAGGCCATGGTGACCAGAGATTGCAcgtattttacataaaacactcTTTTAGCGGACAGACGTCTCTACTAACTAGTTGGTCTCGACTCTCGGCAATATGAGTGGACATCCGCCTCAGAGGAGGGTGGCGAATGTCGGATCTATGCTTCTCACCCCTCAGGAGAACGAGTGTCTCTTCAGCTACCTTGGCAGAAAATGCATCACACTTTGTTCGGCAGTGGTCCAAGTGTATGTAGCAGACAGGGGCCCATCCTGGACCAAAAGATGCTGTGGTGTAGCTTGCTTGGTGAAAGATAACCCTCAGAGGTCTTATTTCATCCGTGTGTTTGATATCAAGgATGGAAAACCTAAATTTGAGCAGGAACTCTACAATAATTTTTCAAGCAGTAGTTCAAGACCATACTTTATTGCATTTGCAGGAGATACTTGTCAGGTCGGCCTGAATTTTGCCAGTGAAGAGGAAGCAAAGCGTTTTCGTGCTACACTAAATGAACTGCTCAGCAGACGACAGAAGAAAACTGGACCCACGTTGCCAATGGCGACGGTGGACATCAAGAACCCGGAGATAAACAATGTGCGCTTCCACAATTCCCACATGAACAACATGGTGCACAGTAGCTTTaacaagaaggagaagaaggtgAAGGGCAAGAGGAAGAAACTGACGAAGGCTGATATTGGGACCCCAAGCAACTTCCAGCACATTGGCCATGTGGGCTGGGATCCGAACACAGGCTTCGATCTGAATAATCTGGACCCAGAGCTGAAAATTCTGTTTGACATGTGTGGCATCTCTGAAGCTCAGCTGAAAGACAAAGAGACATCTAAAGTGATTTATGACTTCATTGAGAAGAAGGGAGGTGTGGAGGCTGTTAAAAACGAACTGAGGAGGCAAGCACCTCCGCCTCCTCCATCACGTGGTGGTCCTCCTCCCCCGCCCCCTCCACACTCCTCTggacctcctcctcctcctccccctgcCCGAGGACGAGGGGCCCCACCACCCCCTCCGCCGTCTAGGGCCCCAACATCTGCACCTCCACCCCCTCCTCCGTCCCGACAAGGCATGGGAGCCCCTCCTCCTCCGCCTCCGAGCAGGGggcacccccctccccctcctcctgcTCATGCCAGCATGCCACCCCAAGCACCCCAGTCTCATCCTCCACCCCCGCCCCCTCCGCCATCTGGAGGAAGCGCTCCGCCCCCTCCTCCTCCGCCCCCTCCTCCACCTGGACCTCCACCTCCGCCCGAAATGGAAGGGAGCGTAGACTCAGTGCCCTCtcctgtggggggtaagtcagccCTGCTGGAGCAGATCAGAGAGGGCACCCAGCTGAAGAAGGTGGAGCAGAACAACAGGCCAGTGTCTTCTACGGGGCGCGATGCCCTCCTCGACCAGATCCGACAGGGCATTCAGCTCAAAACGGTATCAGATAGTTCTGACTCAGGCCCACCAACTCCTGCTCTCTCATCAGGCATCGTTGGAGCACTTATGGAGGTCATGCAGAAGAGGAGCAAAGCCATCCATTCCTCAGatgaagatgaggatgatgaCGAAGATGAAGACTTTGAGGACGACGATGAATGGGATGATTAGTCCTGGTCTCCTTATGCTAACCCCACCCAGTAGAATAACTGACACTAAATTCTCACCTTTCCAAATTGTACTCAAATTCTGTACATGTTCTTTCAAATCGCTGTATATTtttgttgccttttttttttaataatttgtgcAATACCTCATATAATCTGTAAAGTATTGTCATGTATCCTCTGTAAAGTAATCTCCTGGGATAACCACGTGAAGTTTAATGCCAGGCTGGGTTTTCTTGACTAGTTGATTTGAATGTTTTTGTTCCCTCGTTAATGAGGAAAGGGAGATGGACAGGATCCTCTAAGTTCTTGTTAATTGTTGATTAATGATTGAAAACGCTATTTTCATACCCTACTTTTCTGTACCTTCGATTTTCTTATTCAAATCCTAGTTTAGCACTCTACGTTTTGGTAAGAGGTTCTTCTATCAGAATATTTAATCCCTCCACCCTCCCACCCACTTCTGTATAGTTACTATGTAAATGTACACTAGGCAGATATACTGCGGTTGTTATGTTTTGCACGGATGTCAAAACAAAAGTCACTACAAGACAAAAGTCACAACAAGACTACAAAACACTACATTCTCACCAATTATACCCTGTGACTCTTCcttacagagagaaagaaaaagaaaatcactcGACACTGCATGTCAAtagacagtcttttttttttttttttttttttttttttttagtttgttgcTTTTTGGTGTTATTGAAAAAGATAACGCTGTAGTTTCAAACCGGTTAAAGTTATGAATGCCGCTTGCTTCTGGATATGGTGATCACGCCCTCTCAGTAACAGGTTTTTATTCAAGTCATATCATAAGAAAAAGCACTACACGAAGCATTCAGTGAACCTAAACCATTTACTAGAAGCTGTTAAAAAGCCAATGCTTGACTGACACCTACATGTAAGGTAAAATACAAGGTAAAACACCTTTGTGTAGCAATTAATGCTGTTTTAACAGTGTTTGTTTCAATTTCGCTGTCCTTCAAGGATTGTGCTGCATTAAAACTATAGAACTGACTTCAAACCTTACAAATGGGTTGGAATGTGGAATGAAAACACTAAATTGTGTACTTAAATAAATGGTAATATTGGTT

Function

GO:

id name namespace
GO:2000601 positive regulation of Arp2/3 complex-mediated actin nucleation biological_process
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100774 lncRNA upstream 61926 18992678 ~ 18994863 (+) True G74810
TU100776 lncRNA upstream 61926 18992788 ~ 18994863 (+) False G74810
TU100720 lncRNA upstream 85923 18957638 ~ 18970866 (+) True G74770
XR_002650255.1 lncRNA upstream 352902 18702721 ~ 18703887 (+) True LOC111193102
TU100662 lncRNA upstream 428761 18627649 ~ 18628028 (+) True G74714
TU100800 lncRNA downstream 913 19082312 ~ 19082521 (+) True G74831
TU100802 lncRNA downstream 4404 19085803 ~ 19086231 (+) True G74833
TU100846 lncRNA downstream 112974 19194373 ~ 19196148 (+) False cadps2
TU100845 lncRNA downstream 113143 19194542 ~ 19196415 (+) False cadps2
TU100875 lncRNA downstream 378574 19459973 ~ 19462085 (+) False tmem17
XM_007246549.3 mRNA upstream 106441 18939095 ~ 18950348 (+) True gpr37
XM_015605137.2 mRNA upstream 119662 18893227 ~ 18937127 (+) True pot1
XM_015605138.2 mRNA upstream 119662 18893227 ~ 18937127 (+) False pot1
XM_022672241.1 mRNA upstream 218032 18672401 ~ 18838757 (+) True LOC103033497
XM_007246546.3 mRNA upstream 388329 18653276 ~ 18668460 (+) True LOC103032349
XM_022672249.1 mRNA downstream 17117 19098516 ~ 19114949 (+) True iqub
XM_007246558.3 mRNA downstream 38148 19119547 ~ 19133880 (+) True slc13a1
XM_007246559.3 mRNA downstream 38148 19119547 ~ 19133879 (+) False slc13a1
XM_007246560.3 mRNA downstream 58750 19140149 ~ 19322775 (+) True cadps2
XM_007246562.3 mRNA downstream 58750 19140149 ~ 19322775 (+) False cadps2
TU100573 other upstream 601592 18454851 ~ 18455197 (+) True G74649
TU99974 other upstream 2768460 16286676 ~ 16288329 (+) True G74169
XR_002650242.1 other upstream 4135786 14891534 ~ 14921003 (+) False rpgrip1l
TU99159 other upstream 4407238 14648829 ~ 14649551 (+) True G73533
XR_002650241.1 other upstream 6158858 12871484 ~ 12897931 (+) False LOC103043719
TU100801 other downstream 1417 19082816 ~ 19085556 (+) True G74832
TU101007 other downstream 446592 19527991 ~ 19533073 (+) False LOC103044129
TU101298 other downstream 1122220 20203619 ~ 20207922 (+) True LOC103028745
TU101630 other downstream 1941857 21023256 ~ 21025128 (+) True G75383
TU101641 other downstream 2007223 21088622 ~ 21096906 (+) True G75391

Expression Profile