RNA id: XM_022672245.1


Basic Information

Item Value
RNA id XM_022672245.1
length 2487
RNA type mRNA
GC content 0.46
exon number 7
gene id LOC103035727
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 19023690 ~ 19046218 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGAATAccagaaaaacacaaataagaGCCGCGCTGCCAGGCTGATTAGctatattcattatttactattttcCCATTTCCGCTGGTGATGTGTTTGAGTGAAGACTGATCATTCGTAACTTCTCCTAACGCATGATTTAATCAAACGTGCCTGATGAAAGGATGGCCTTCTTTCATTGGATTGAGTTTGTCGGGAGGTTGTTGATCAGACGGAGATGCAGTACTAAAAAAATGTGGAGTTTTTGACAGTGTGTAATGACAGAACACTACAGGAAAAGGACACAGCAGATGACCAAGTACAACTGACTCTAAAGGTCACTTTGTGGTTTAAAGAAGACTCACAGTATTTGATAGTAGACTGTAGAAGgTGGGTGACTGATCCATGCAGACCCAGGGGTGATGGCAGTGTCTGACCTGCTGACTGTAGTGCTGTGGGGGTTGGTTGTTGTTCAGGGTGAGCAGCTGAAACAGGCCCACACTCCTCTACTGCCCCATCGGCCGTTTGTGGTGGTGTGGAACGCACCCACTGAATCGTGCCGTCTGCGTTTTAAGGTGGACCTGGATTTAAGTGTATTTGACATTTTTGCTAACCAAAATGAAACACTGAGCGGCCCAAATGTCACCATCTTCTACCACAGTCACCTGGGCTACTACCCTTATTACACCAGCACTGGAGTTCCTATCAATGGAGGCCTGCCTCAGAACCAGAGCCTCAGCAAGCACCTCAACAAAGCCAGAGCTGACATCGACAAGCTCATCCCGTTCAAAGACTTCCGAGGACTTGCTGTGATTGACTGGGAGAACTGGCGTCCTCAGTGGGTGCGCAACTGGGGCTCCAAGGACATCTACCGGAACAAATCCAAGGAGCTCATAAGAAAGGCTCATCCTCGCTGGCCTCAAAGCAAAGTGGAGAATGAAGCCAAGGAGACTTTTGAGAGAGCAGGACAGGCTTTCATGAACTTCACTCTACAGCTTGCAAAGAGTCGCCGGCCACATGGCCTGTGGGGCTTTTACCTGTTTCCAGACTGCTACAACTACGGCTACAAGCAGCACCCACACCGATACACGGGAGAGTGCCCCAATGTGGAGCATGTGCGTAACGACCATCTCATGTGGCTTTGGAAGGAAAGCACAGCGCTCTATCCATCCATATACCTGGACTATGAGCTGAAGTCTTCACCCAACACTGTGAAGTTTGTGCACTATAGGGTCAAGGAGGCAATGCGGATCGCCTCGATCGCCCGGAATGACTTCACTCTGCCTGTGTTCGTGTACTCCAGACCCTTTTATGCCTACACATTCACTGTGCTGTCTGAGAGTGACCTGGTCCACACCATAGGAGAGAGTGCAGCACTGGGTGCAGATGGAgtggtcctgtggggttctTCAGAGTATGCTCGATCTCAGAGAAACTGTCTgacagtgaaaaaatatatcGATGGCCCACTTGGCCATTACGTCATCAACGTTACTTCTGCAGCTAAGCTGTGCAGCAAGGCTCTGTGCAAGAAGAATGGTAAATGTGTTCGCAAGAGCATGGACTCTAAAGCTTACCTGCATTTAAACCCCCGTTTCTTTAACATCCACCTCAACCGAGCCGCCCGCGGCCCTCGTTTCCATGTGAGCGGACACCTCAACTACCACGATATACTGGACATGAAGCACAAATTCACCTGCCAGTGTTACCAGGGCTGGACGGGTATCTACTGTGAAATACCTCAGCTCATCCACCCACTGCCTCCCAGATCAAACGACAGTTTCCTGCCTGAGCTGCTGCTCGTGCTGTCCCTTTATTTCTCCTGTCTGTCCGTCATCATTTTTCTTGGACTGTGTCTCATTATTAAGTGTCTCATCTTATAAACAGTGTTGTTGAAAAGGTTGTGGACACATGTTGAGACAAAGTGCTTGGACATCCAGGCTAGAGCACACTGACAGGGCGAACGTTGACAAGCATGAagcatttgaaaaaaatcttaaatgttTTCTGTTCCTTTAATTTAGTTCATTTGACTTGAAAGTTCATTTTCTACCAGTATTGGTGAATCACTGTAGCCTTTATTTAATAGAACTGTAACAGGAAGTCTGTTTATGTAGTTATTCTACATATGgaaacataacaaaaaatagttgtttacttggagcatgGTCACTCCTCATATCTAGAGTTATAGTAAATTGCCTGAAAGAAGACAAACAAAATGCAGCCTGGGGAACTCTGAACAGCCACTGTGAGAATGCACCAAACTGTAATGACAAAGTTGGTTGACCAAGATGGCTCAGACTTGGTTAAGGCTCCAAAACACTGTCTTCCTACAGTTGTGCCTATAAACTTTGAAGGCTAAAACAATATCTCTCCATCTTGAGCTTTTTTCATCTTAATGAATCACTCACATAATGTGACAGTTATCCCAACTCatacatgtacagctctggaaaaaagagaccatctcagtttctgaataagtttctctaattttgctatttaaat

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0004415 hyalurononglucosaminidase activity molecular_function

KEGG:

id description
K01197 hya; hyaluronoglucosaminidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100779 lncRNA downstream 28806 18992823 ~ 18994884 (-) False LOC103034453
TU100767 lncRNA downstream 37497 18984195 ~ 18986193 (-) True G74804
TU100756 lncRNA downstream 55780 18960804 ~ 18967910 (-) True G74796
TU100748 lncRNA downstream 73574 18948629 ~ 18950116 (-) True G74792
TU100688 lncRNA downstream 373919 18649439 ~ 18649771 (-) True G74740
TU100915 lncRNA upstream 233434 19279652 ~ 19341936 (-) True G74910
TU100920 lncRNA upstream 241122 19287340 ~ 19290287 (-) True G74915
TU100940 lncRNA upstream 279174 19325392 ~ 19418804 (-) True G74928
TU100913 lncRNA upstream 298727 19344945 ~ 19350011 (-) True G74909
TU100916 lncRNA upstream 307875 19354093 ~ 19355051 (-) True G74911
XM_007246551.3 mRNA downstream 15324 18992668 ~ 19008366 (-) True LOC103034453
XM_022672242.1 mRNA downstream 36632 18978848 ~ 18987058 (-) False LOC103028224
XM_022672244.1 mRNA downstream 37045 18978848 ~ 18986645 (-) True LOC103028224
XM_007246627.2 mRNA downstream 46525 18975308 ~ 18977165 (-) True LOC103027908
XM_022671893.1 mRNA downstream 50377 18970412 ~ 18973313 (-) False LOC103034129
XM_007246556.3 mRNA upstream 34930 19081148 ~ 19086198 (-) True LOC103036047
XM_022672248.1 mRNA upstream 40675 19086893 ~ 19095789 (-) False asb15
XM_022672247.1 mRNA upstream 40675 19086893 ~ 19095789 (-) False asb15
XM_015605110.2 mRNA upstream 40677 19086895 ~ 19095789 (-) True asb15
XM_022672256.1 mRNA upstream 318380 19364598 ~ 19437614 (-) False ptprz1
TU100745 other downstream 83226 18939174 ~ 18940464 (-) True G74791
TU100498 other downstream 993943 17982747 ~ 18029747 (-) True G74591
TU100463 other downstream 1139904 17877026 ~ 17883786 (-) False nrg4
XR_002650248.1 other downstream 3245267 15761764 ~ 15778423 (-) False LOC103046265
TU99163 other downstream 4478252 14542209 ~ 14545438 (-) False LOC103025073
TU100809 other upstream 24720 19070938 ~ 19072888 (-) True G74838
TU101215 other upstream 813476 19859694 ~ 19865982 (-) True G75100
TU101358 other upstream 980944 20027162 ~ 20032027 (-) True G75207
TU101364 other upstream 1041200 20087418 ~ 20100250 (-) False hsd17b12
trnat-agu_2 other upstream 1849885 20896103 ~ 20896176 (-) True trnat-agu_2

Expression Profile