RNA id: XM_007246575.3


Basic Information

Item Value
RNA id XM_007246575.3
length 4494
RNA type mRNA
GC content 0.46
exon number 24
gene id aass
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 19341280 ~ 19362921 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTGATTGGTGAGAGCAGGGGCTCGGCTCACATTACACCGCCTGCCTGCCCCGCTCCCACAGCCCTGTGACAGCCGCTGTGTACAGACCAGTCTACGGTACAGACCCACAGGGTACACTGTATATTACACACACTCTGCTGCTGCACGTACGACGAGTGGAGGCCGCCTCCGTCCTGAGAAGAGTCTGTCCTTCGGGGGTTCAGAGCCTCCTTTTCCTCCTCCAGCCCGCTGCGGTCTGTCTGCCTGTcggtctgtctgtgtgtctcgtTACCTGCGGCTCTGCCCGGCTGTCTGTCAGTCCACCCGGCTGTTAATGAGATTACCGGGGGTCGAGGCCGCGCTACAGTCCACTCGCCACGCTTTTAACGCTGAAAGCCTGGGTAAACCATGCTGAGACTTGCCAGGAACCAGGGCAGAAGGGTGAGGGGCTGCATGTGCAGCCAGCGGAGGTCAAACCACTACAAGGGTGTGATGGGCATCCGTCGTGAGGACGTCAACGTATGGGAGAGGCGTGCACCCCTTGCTCCTCGCCATGTAAAGGAAATCACTGCTGAGGGCTATAAAGTCCTGGTGCAGCCCTCCAACAGGAGAGCAATCCACGACAGAtaCTATGAGAAAGCAGGAGCCATCTTACAGGAGGACATCTCGGAGGCTTCTCTCATTGTAGGTGTGAAGAGGCCTCCAGAAGAAAAAGTTATTCCACATAAAACTTACGCTTTCTTTTCTCACACCATCAAAGCTCAGGAGCCCAACATGGGGCTTTTAGATGATATCCTTAAAAAGAATGTGCGACTCATTGATTATGAGAAAATGGTGGACGAGAATGGTTTCAGAATCGTAGCCTTTGGAAAGTGGGCTGGTGTTGCAGGAatgattaatattttacatGGCCTGGGTCTGCGTTTTCTTGCCCTTGGACATCACACTCCCTTTATGCATATTGGAATGGCACACAACTACAGAAACGTCAGTCAGTCCGTTCAAGCAGTGAGGGACTGTGGATATGAGATATCTCTGGGATTGATGCCCAAGTCTATTGGTCCCCTCACGTTTGTGTTCACTGGCACTGGCAACGTATCTAAGGGTGCACAAGAGATTTTTAATGAACTTCCATGTGAGTTTGTGGAGCCACATGAACTGAAAGACGTCTGCGAATCAGGAGACCGAACTAAAGTGTATGGCACGGTCATCAGCAGACGTCACCATCTCATTCGAAAGAGTGATGGCCTGTATGACCCTTTTGAGTATGAGCATCATCCTGAACGCTACACCTCACACTTCAGATCCACCATAGCACCTTACACAACATGCCTGATTAACGGTATCTACTGGGACCCTCACACTCCAAGGCTGCTACGACGACTGGATGCACAGAAGCTCATGAAACCTTCAAAGCTTTCATCCTATTCAATAGAAGGCTGTCCAGAGCTGCCACACAAGTTCTTGGCTATTTGTGACATTTCTGCAGACACAGGAGGCTCCATAGAGTTCATGACTGAGTGCACCACTATTGAGAAGCCCTTCTGTATGTATGATCCCAAAAAGCACATCGATCACGACAGtgtggaaggaAATGGCATTCTCATGTGCTCAATTGATAACCTTCCTGCCCAGCTGCCTATTGAGGCTACCGAGTATTTTGGTGACCGCTTGTTACCTTATGTTTGGGAAATGCTTCCTTCAGATGCTACAAGACCACTGGATGATGAGGGCTTCACTCCACAAGTTAAAGATGCTGTAATAACATCCAATGGCAAGTTGGCTCCCAAGTTTGAGTACATTGAGAAGCTAAGAGAGAGGAGGGAGTCTGAGCAGATCCTGAAGAAAGGCGGGATGAAGCGTGTGCTGCTGTTAGGATCTGGCTATGTGTCCGGGCCAGTCATTGAATATCTCACCAGGGATGTTGCCACTCAGGTCACAGTGGcctcagtgttactgagccaGGCAGAGGAACTGGCTGCCCTTTACCCCAACACCATACCTGTGATGCTCGATGTGTCTAGCCAAGAGGGCCATCTTGAGTCTTTGGTCAAAGACCATGACCTAGTGATCAGCATGCTGCCATATTCTTATCATCCTCTGGTAGCTAAGCATTGCATAAACAAGAAGGTGAACTTGGTGACAGCCAGCTACCTGAGTCCAGAGATGAAGGAGCTTCAAAGAAGTGCGGAAGAGGCTGGCATCACCATAGTCAATGAGATGGGCCTGGACCCTGGCATTGATCACATGTTGGCCATGGAGTGCATCGACCAGGCCAAGGCAGACGGTTGCACTgtggaGTCGTTTAGCTCTTATTGTGGTGGTCTTCCTGCACCAGAGTGTTCTGAAAATCCACTGCGCTACAAATTCAGCTGGAGTCCATATGGAGTGCTGCTTAATACCATCAGTCCTGCCGTCTATCTCAAAAATAACCAgGTGGTCAGTATTCCTGCTGGTGGTTCTCTGCTGGAAAGCACAGTGAGCATGGACTTCCTGCCTGGTTTTAATCTGGAGGGATTTCCCAATCGTGACAGCACCAAGTACGCTGAAGCTTATGGCATAGAGTCTGCACAAAGCTTGGTCAGAGGGACCCTGCGTTTTAAGgGCTTCTCCCATGCAATGAGTGGATTTGTAAAACTCGGAATGATCAACACAGACCCTTCACCATTGCTCAATCCAGCAGCCAGTCCCATCTCCTGGAAAGAGCTGCTGTGTAGGCTGCTTGACTTGCCCTCATCTGTTAGCAGTGACTCAGTTGAGGAAGTGGTGTTTAACCACATTGGGAGAGATGAGTTCAGGATGCAGACACTCAGATGgCTGGGAATGCTGAGTGATGAAGCTGTTCCCCAGTGTGGCACCATCCTGGCATCGCTGGCTAAACACCTGGAGACCAAGCTCGCTTACGaaaaaaatgagcgAGACATGATCATCATGAGGAATGATGTCGGCATCAGGCACCCAACGGGCGAGCTGGAGACAAAGCACATCAGCCTGGTGGTCTATGGGGACCCCAAAGGCTTCTCAGCCATGGCTAAAACCGTGGGTTACCCTGCAGCTATTGTAGCTCGCATGCTGCTTAATGGTGAGCTGAACACTAAAGGACTTGTTGTACCGATGACAAAGAATATATATGCCCCAAttctgaaaacactgcaggaggAAGGCCTTCAGTTCATCACCAAAAGCACTGTAACTGAGTAACCTGTTCTAAACACGCAGGCCTGGAGGTTCAGGATAAGTAATTTAGATGGATTCACAGGCCGTGAAGAAGTTGTTTTattgaaatacagaaaaatatgtGATTATTGACACGAATCCAGGAACACCATGTGTTCactaaacatctattttcttacatttgTAACATGTATAAGACAAAATACTGGCATAACTGAAATGCAGACTTTGGCAGGTGTGCTGTACAGAATGTAACCGAGCTGCAAAGCAGTAAAACAgtgtagtgtttttattttactcatgtTGCTTTGTGCATTTTCCTCATTGGACatccttttatttaaatgtgaatatttctttaaaaattccAGAGTTTTCAGAATTACCGTTCATAAATCAAAATACTGTTGACTGGGGTTAATCTGCTGTATTGAAGCACTTTAGTGGATGTGTAGATTTCAGCACTGTTACAGTTAATGCAGAATGACAACAGGTTCAATCCGAGAACTGTTACAGAACTCACTCATCTtttacagaaatgtgttttattatatgtattaaatgCTGATTGGGGTGTTTACTCCAGGCTTTGTCAATTGGATtgtccttttaaaataaaataaatattatgacCCCTTCTGTTGATCATCTTCATAAGCCCACTGTTCAGATACAGAGCTCATTTTgttgttaaaaataaacagatccAATTTAAtgaacagggaaaaaaaaatcacacagtaaacacagtaaaGTGTTGGTGAACTGGATACCATGCTGGCAATGTGTTGGCACTGACATCCTAACAAAAATGATCGCTTACTAAACATAATGGGCCCTGTTATGAGTAATTTAAGGCCAGATCTATTTGTAAGGCTGCTGAAAAGCTGGGTTTGTTATCAGATTCAGAGCCCTTTTGCTTATTGCCTTCTCATTCAGCTGAGCCTACTGTACTCAGAAATAGCAACTGCAGGCCCGTGCATACCCACAGAACCAAAACCAGTGCTGTGCGGAATTTTGTATCTTCTGTAATCTTATTAGAAGTTTCTCtgcttttattagattttttttacacttaataAAATTAAGAGTCTAGTAAATGTATAAAAGCATTACCTGCAGTCTGTACATTGAAGCAAAACTGGAAATAGGGCTGTGGAGTCTCTGTtgttttaaacctgttttaagTGCTCTTTGCCCTCACtttgtactaattatttttcttgccaccttaaaaaatattgaacaataataatacaaatccATAGTTTATTTACCAGTTTCAAATGGACATGTCTGGGAAAATGTAATACAGCAATAAAGACATTTATTGcgta

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100845 lncRNA upstream 144865 19194542 ~ 19196415 (+) False cadps2
TU100846 lncRNA upstream 145132 19194373 ~ 19196148 (+) False cadps2
TU100802 lncRNA upstream 255049 19085803 ~ 19086231 (+) True G74833
TU100800 lncRNA upstream 258759 19082312 ~ 19082521 (+) True G74831
TU100776 lncRNA upstream 346417 18992788 ~ 18994863 (+) False G74810
TU100875 lncRNA downstream 97052 19459973 ~ 19462085 (+) False tmem17
TU100986 lncRNA downstream 115077 19477998 ~ 19481088 (+) True G74951
TU100987 lncRNA downstream 117430 19480351 ~ 19481987 (+) False G74951
TU100995 lncRNA downstream 144197 19507118 ~ 19510980 (+) True G74958
TU100996 lncRNA downstream 144197 19507118 ~ 19507522 (+) False G74958
XM_022672254.1 mRNA upstream 6943 19330251 ~ 19334337 (+) False fezf1
XM_022672253.1 mRNA upstream 6943 19330255 ~ 19334337 (+) True fezf1
XM_007246568.3 mRNA upstream 18505 19140153 ~ 19322775 (+) False cadps2
XM_015605117.2 mRNA downstream 91132 19454053 ~ 19459308 (+) True slc15a5
XM_022672263.1 mRNA downstream 97037 19459958 ~ 19462187 (+) True tmem17
XM_007246588.3 mRNA downstream 131001 19493922 ~ 19503421 (+) True cnot2
XM_007246589.3 mRNA downstream 131146 19494067 ~ 19503421 (+) False cnot2
XM_007246587.3 mRNA downstream 131223 19494144 ~ 19503421 (+) False cnot2
TU100801 other upstream 255724 19082816 ~ 19085556 (+) True G74832
TU100573 other upstream 886083 18454851 ~ 18455197 (+) True G74649
TU99974 other upstream 3052951 16286676 ~ 16288329 (+) True G74169
XR_002650242.1 other upstream 4420277 14891534 ~ 14921003 (+) False rpgrip1l
TU99159 other upstream 4691729 14648829 ~ 14649551 (+) True G73533
TU101007 other downstream 165070 19527991 ~ 19533073 (+) False LOC103044129
TU101298 other downstream 840698 20203619 ~ 20207922 (+) True LOC103028745
TU101630 other downstream 1660335 21023256 ~ 21025128 (+) True G75383
TU101641 other downstream 1725701 21088622 ~ 21096906 (+) True G75391
XR_002650259.1 other downstream 1887546 21250467 ~ 21264776 (+) True mov10l1

Expression Profile