RNA id: XM_007246578.2


Basic Information

Item Value
RNA id XM_007246578.2
length 3559
RNA type mRNA
GC content 0.46
exon number 17
gene id fnbp4
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 19475550 ~ 19485147 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atggatttttacctTCTGGACCTGGGTTAACCACCCCTGCCCAGACTACACAGAGAGACGCAGCTAACAGCGTTGGCTTTGAACGGAGAATAATTTGGCAAAGGAGCCAGAGGGTAACGCTGACAGCCATAGAGAAGTAAACATAGAAATGAAGCCTCCTGCTGTAAAGGCAACCCAGGGCTTGTCCTTGCTGGGTGCCTACGAGGACAGTGACGAGGAAGATGCTTCTGAAACCATTTCCACAACAAAGGGCAAGCACAATCGGCCTGCAGATATTGACAGTACCCTAGCTAGTTTCATGGCTGAGATTGATGCAATCACCACTCAGCCAGCCCAGGCAGAAGATTCTGTGCCCAGTGCTCCTGCACCTACCCCTCCACGCCCTGAACCCAAAACGGAGCAACAAGCTCATGTTCAGAATGGATCTGCACAAGAATTTCAGTATAATACACAGTATTCCTTGGCAGGagCTGGTCTTGAGATGGGAGATTGGCAGGAGGTGTGGGATGAGAACACGGGCTGCTACTACTATTGGAACACCCAGACTAATGAAGTTGCCTGGGAGCTTCCCCACTATCTGGCAGATCAGATGCAGAGTCTTCAGCAGCAGTACACAGAAACCTCATCAATCAATGGCAGCGGCATGTCCCACCATGCAGAGGGATATCCTGAACAGACTCCTGCAGTGTCTGCTGCTGTACCTAAAAGGGAAACAAAAAAGAagGAAGTAATAGAGAGTGTGGTGGCTTTAACCAGTGATGAGGAAGAGCGAAAAGGGGTGGCTGCCTCTCTCCTTGCACCCCTCATACCACCTGAGGTGAAGGAGGCGGAGGAGCAATGGAGGAAGAAGATTCTGGCTATAGAGGAGAAAACTGACAGTGGTCAGGAGAATGAAGGGGAAGATGCTCAGCCTTCAGGCTCTCCTGCTGTTTGTGATGCAGAAAGCCCTTCTAATGCTAACCAGCAAAGCAGAAACCACTCAGTTGAGAACTCTGAAGGCGAAGACGAGCCAGAGGAGGATACCATGGAACTGGAACTTGcattagagagaaaaaagGCTGAACTTCGCGCCCTAGAGGAAGGTGATGTTAGTGCTGGTGGTTCCAGCCCCTGTTCTGAGGCCAGTCAGGAGGGCTCCCGTAGTGGCCTTTTGAAGAAGACGAAGTGGAAAACTGCTTTTCTTCGTGCTCAGAGTCCTGACTCGAACAGCAGAGGCTCTGACAAGGCAGGATGGGACACACCAGATAATGTAGATATCgCACATTCCAAAACTGCTGAGAAGCAGGGggacaaagaaaaagaggaaaaggacAAGAGTTTACCCAAAACCCAAGAGGAGGAAACACCGGACCTCAAGTTTCAGATTGGAGAGCTTGCAAACACATTAACCAGCAAAATGGAGTTCTTGGGAATTGACAAAAAGGCCATCTCTAACTTTCAGTTGCTTTTACTACAAACGGAGACACGGATAGCAGATTGGCGAGAGGGTGCTTTGAACGGAAATTATCTTCGTCGCAGGTTGCAGGAAGCTGCTGAACACATAAAACATTACGAACTTAACGCCACTCCCAAGGGCTGGTCCTGCCACTGGGACAGAGATCACAGGCGGTACTTCTACGTGAATGACCGGAGCAGTGCCTCTCAGTGGGAATTTCCAGATGTGGTAGAGGAAGGAGGAGTAGACGCCAAGCCTCTTCAGCCCTCTACAGCTGTCCAGGGAAATGCTGATATTTTGCCTCCTGAGGCTTCCAGTGGTTTAGTAGCAGGAACTTCATTTGGAGAAACCCAGGCCTACTGGTCTGTTCATCAACCTCCACTTCCTCCAGAGACTCCCCCTCCACCTATAGAGcaacctcctcctccacctccaccaccagaATCGCCTCCACCACCCCCTCCACCACCCCTTAGTGACGATGGGGAGATTGAGGAAGTAGAGATGGAAGATGAGGATGCAGAGCCACCTGCTCCTGGAACAGAAGAATTTAAGGCCAGTGAAGCAGCACTATCTCAGGCAGCCACAGCTAAAGCTCAGAAGCGGAAAGCACCAGGTTCAGCACAGACAAACAAAGCTGTCATGATTGGGAGCAGTGCCATACTTTACGCTCAGCCTGTTGTCACCTCAGCCCCACTGATGACTGGAACTGCGTATTGGGGAATGCCTGCAGCAGCTTTGCCCCCTCTGCCATCAGAGAGTTTAGTTCCACCAGTTCCAGCCCCACCCTCGCAACCTCCACCTCCGATACCCCAGCCACCAAGTGAACCAACTTCTGGCAAAGTGCTTgttgacaaaacaaaaaagctaaaaaaagaaaagATGAAAAAGAGTAAGACGAAGATGCCATCTTTGGTCAAGAAGTGGCAGAGCATTCAAAGAGAGCTAGATGAAGAGGAGAAATCAAGTTCTAGTGATGAAGATCGAGATCAACTAAACAACAAACGTATTGAAGAGTGGAAACAGCAACAGCTTTCCTCAGGGAAGGCAGGAAAGAATGCCAACTTTGAAGCACTGCCGGACGACTGGAGGGAAAGGCTGCTGAAGAAGAGGAAAATGATGCAGAGTTCATAACAGCTGTACTAAACAATTTGCACATGGTCAAATCGGACACTCTCTGGAGTGGACTTGGTCTTGAACTGTATCTGTCATCACCCTGTTCTCGCAGGATGAGTTAGATCAAACTGAATGagtggttgtgttttttttttatggactaTATATGATGTGCATATATTATTGcacatttacttttttgtaaACCTATCAttcacaatacattttttattattgtaagcGGGTGTCTTTCTGCTTATTGGCATTTGTAAAGTGGCCCTGATGTGTacatatttgtatttctttttcccCCTAATATGGTCTACTGTCAGACACCTCCCTCTAATCCACCATGTCAAATATTCATTCCTAAAATTgcaatttgttttctttttccccctctttcttctGTTAGATTTTACTTTCTAAGATTACTAATTGATCTGATTTCAGTTTGTTGCTTGGTTTCTGGGCCTTGGATTCAAAGATTGCTCCCTCTGGACACTTACAATTCTATGACATGCAGTCcccaaaattaaataattttaagcagTTTGGTATTTGCAGTAGTTCATACTACTGACTAACTTTTAACTGAgatttggagtttttttttttttttctttttctatagcAGTTCCTTTCGGAATGAATGTGGACTATATAAAACTATGGCCTGCTCACTCCAGTGGTCAGACATTGTGCACACATTTGAGCAGATAAGGACAAGAACGATTTTGGCTAAATTCCACTCTGAATTTTGCCTCTCAAGTGGACAAGCTACATCTTTGTAAGCCTTCATGGAGACGTGTGCCAATTGCTCCAGTTTTCCTCAAACCTTCGCAACAGTCTGTTTTTCTCTGGCACTTGTACATCTCTCACTGGAGTGTGTTCTGTGTAATTGTATACTTGATAGGGTGGGAGGGTTATGGGGTCAGTGAATTTTCCAATGTtgtaaatacttaataaaaaaaattcaacctGTATTTTAGACCTGTTTAAGAATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100940 lncRNA downstream 56746 19325392 ~ 19418804 (-) True G74928
TU100916 lncRNA downstream 120499 19354093 ~ 19355051 (-) True G74911
TU100913 lncRNA downstream 125539 19344945 ~ 19350011 (-) True G74909
TU100915 lncRNA downstream 133614 19279652 ~ 19341936 (-) True G74910
TU100920 lncRNA downstream 185263 19287340 ~ 19290287 (-) True G74915
TU101154 lncRNA upstream 156094 19640821 ~ 19688118 (-) True G75069
TU101183 lncRNA upstream 260837 19745564 ~ 19746445 (-) True G75081
TU101206 lncRNA upstream 314658 19799385 ~ 19799625 (-) True G75092
TU101207 lncRNA upstream 320039 19804766 ~ 19804970 (-) True G75093
TU101227 lncRNA upstream 386415 19871142 ~ 19872681 (-) True G75106
XM_015605131.2 mRNA downstream 2508 19462357 ~ 19473042 (-) False LOC103041446
XM_007246582.3 mRNA downstream 2508 19462357 ~ 19473042 (-) False LOC103041446
XM_007246580.3 mRNA downstream 2508 19462357 ~ 19473042 (-) False LOC103041446
XM_007246579.3 mRNA downstream 2508 19462357 ~ 19473042 (-) True LOC103041446
XM_007246581.3 mRNA downstream 2546 19462357 ~ 19473004 (-) False LOC103041446
XM_015605116.2 mRNA upstream 2396 19487123 ~ 19488636 (-) True lrrc10
XM_007246586.3 mRNA upstream 2396 19487123 ~ 19488634 (-) False lrrc10
XM_022672264.1 mRNA upstream 20323 19505050 ~ 19525749 (-) True washc4
XM_007246593.3 mRNA upstream 84603 19569330 ~ 19572536 (-) True etfbkmt
XM_022672275.1 mRNA upstream 112203 19596930 ~ 19622548 (-) False LOC103045635
TU100809 other downstream 402662 19070938 ~ 19072888 (-) True G74838
TU100745 other downstream 535086 18939174 ~ 18940464 (-) True G74791
TU100498 other downstream 1445803 17982747 ~ 18029747 (-) True G74591
TU100463 other downstream 1591764 17877026 ~ 17883786 (-) False nrg4
XR_002650248.1 other downstream 3697127 15761764 ~ 15778423 (-) False LOC103046265
TU101215 other upstream 374967 19859694 ~ 19865982 (-) True G75100
TU101358 other upstream 542435 20027162 ~ 20032027 (-) True G75207
TU101364 other upstream 602691 20087418 ~ 20100250 (-) False hsd17b12
trnat-agu_2 other upstream 1411376 20896103 ~ 20896176 (-) True trnat-agu_2
TU101746 other upstream 1785402 21270129 ~ 21273017 (-) True LOC111193105

Expression Profile