RNA id: XM_007246582.3



Basic Information


Item Value
RNA id XM_007246582.3
length 4297
RNA type mRNA
GC content 0.45
exon number 23
gene id LOC103041446
representative False

Chromosome Information


Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 19462357 ~ 19473042 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


TGGGAAGCCATGGCAACTACGCTACACGTTACGCAAGTTGCTTAGCAACTACGAGAAGATTTATGAAAAAGACTGTAGTTCGCTCAGGTTCCGCTGTTTGCTACCaagctaaaattaaaagaatgtttaaacagtgcagcctgtagtttatagtaaGCTAGAGTttaggtgtgtttgtgtgtttaagcgGGTCGCTGGCTGGCTGTGTGCAGTGTGAGCAGCACACCTGGGACAGGTCCTGAAAACTGTGGGAATAGTTAGTCAGTgagcttagctaactagctttagattagttagcgttagctagcttaccTCGCGTCAACTGCTCTGTAAATTAACGTGACCTAACTAACATTGACGTTCATTTGCTAAACTAAAATAACTTGTTAACTAGAACTGAATAAGGAAGAATTGTTCATCGTTCTAAGGCTCATGTCTGGAAGTAGTGAAATGAAATGCAGaagaccaTAGATGACCCCTACGAGAGTCTCATTCTGCAGCACCTAAAGCATTATGGACTTTTTGCTGGTCAGAGATCTTCATCTCAGAGAAAAGTGTCAGTCGGTAGGACATGGGATGGCACTCATAACTCTTTGGCAACAGATGGCATCCATTCACCATCCAACAGCACAGACTTGGAGGAGGAGGAATCAGAAGCCCATCAGGGACAGTTCTCTTTCAATGCGGAGAAATATCTCAGGACAAAGCAGCTGCTAATAGACTTTCAAGGAGGGCGGCCTATCCCCCGCTTGAAGGAACCTCTTGACCTTTTTACCATCCCGTCTACCTCCAGTCCCTTTCAGGGCGTTCGCTGGCCTGTTGAATGCAAAGTCATCTGTGACAAAATCCGTCACATAGAATGGGACCCTCCTGAACCAGAGCCATTTTACCAACAAACAGGCTTTGAGCGTACCCCCATGCCAGCtggaaaagaaagaggaaacacTGTCTATTGCATAGACTCTGCTGCAGAGGCCCCCTACTTCACCCGATCTCGTGTTGGTGGTGGCAGAGAGCCTAAAAGAAATTCAGCATCTTGTACCAACAATCAGGAAACATCTTCCCTGTCCTTTGAGTCCCGGTTTGAGAGTGGTAATCTTCAAAAAGCAGTTCAAGTAGGCCTTTATGACTATGAGCTTACTCTGCGGCATGACATGTACACCACAAAGCACACACAATGGTTCTACTTCCGTGTGAGGAACATGAAGGCAGGGGTCACCTATCGCTTCACTATCATCAATCTGATGAAATCCAGCAGCCTGTATGAAGCTGGTATGCGACCACTGCTGTACTCTGAGCTTGCTGCCTGGCTGAAGGGAGAAGGTTGGTGCCGTGATGGCAGCAACATTCGgtaCTATCGGAATCTTTGTGAAAATGAGGGAACAGCACTCTACTCACTCACTTGGACAATGCAGTTCCCTTATGAAAATGACACCTGCTATTTGGCCCACTGCTACCCATACACCTACTCAGATCTCCAGCACTACCTGCGAGGTGTCATTTCTGACTCTGTCCGGGCAGCTTACTGTAAAGTGCGAGTGCTGTGCCGCAGTCTGGCAGGAAATGCTGTGTATGTGTTGACTATCACAGCACCCGGTGCCACTTGGAAAGAGCGAAGGAACAAGCAGGCAGTGGTAGTGACTGCGCGAGTGCATCCAGGGGAGACTAATGGATCATGGATGATGCAGGGCTTTCTGGATTTTTTGCTTGGTGACTCACTTGATGCACGGCTACTGAGGGAAACCTTTGTCTTTAAGGTAGTGCCAATGTTGAACCCTGATGGAGTGGTGGTTGGAAATTACCGCTGCTCACTTGCTGGATGTGATCTGAACCGGAACTATCGCACTCTACTACGGGACTCTTTCCCCTGTGTGTGGTACACACGCAACATGGTAAAAAAGTTGGTTGCTGAGAGAGAGGTGGTGCTTTATTGTGACTTTCATGGCCATAGCAGAAAGAACAATGTGTTCATGTATGGTTGTAATGATCATAAAGATGCTTCACTACAACTTCAGGAGAGAATTTTTCCTTTGATGATGAGCAAGAATGCCCAAGACAAGTTTTCTTTCAGGAGCTGCAAGTTTCGAATGCAGAGAAGCAAAGAAGGCACTGGTCGTATTGTGATGTGGAGGCTTGGCATTAGAAACAGCTACACTATGGAGTCCACCTTTGGAGGATCCACACTAGGGTCCAGAAAGGGAACTCATTTCTCCATGGGAGACCTAAAGTCAATGGGTTACCATTTTTGTGACACCTTACTGGACTTTTGTGACCCAGACCAGACCAAGGCTGAACACTGTCTAGCAGAGTTAGAGGCTTTGCTGAGGCAACAGATCAGACAGAAGTTGGGTAGAGATGTAGACTCCCTGGAGGGTCTTTTTGATGTAGACCTTGAGtcaagCACAAGTGGATCAAACAGCACAGAATCCGATGGCCTGCCTGCTCATCTTATAAACTGTGCAGATCAGAATGTGAAAGTGAAGAAGAAGCATTTGCGGAGCAGAAAAGAAAGGAATAGATTGCGACAACAGCAAGAACAGAGTGCAGTATCCAAGATCCttcacaaaaacatcaaaaacacaGATCATTTACCATCAAATGAAGGTATGTTGAAAGTCAGGATCCAAGAGAAAACAGGGAAAGACACGATGGACAAAAGCCAAAAGAGTCCATATTTGGAGGCTGTTAGTGCAGCCTGTCTGCACGGTGGAGGCTTGACAGACCCCTGTCGACGTCCTGCTACAGATGAAACTGGAAGAAAAATGTGTCCTTATGCCCTGCGTCAATCCCAGAGACAAAAACAGCGGCAACCTCTGTCTATCACTACAATCCGAcacagcttctcttctgtgccAATCCAGCAGTACTCTCTGCTCTTCGACTCAGGCTTCAGAGCACAAGATGGAATAAGAGGGAGGTGCTCTGTATCAAACATCTCACTCCGTAGAGCTGTACTTAATGATCAAAGGCAGTTCAGGGTTATTCAAGAATTTGTTCCTGCCAGAGGCCTGGAGCCCTGCACCTCAGCTGACTTATATCCAACCCGCACTGACAACCAGCAGAAGCTTGCACAAGAAAGTATTTCATTCAAATACTTCGCCCCGGAAATACAGGACACTATCGGCAACCTAAAGACTATTCGTAAAAGAAACACACTAGCTCCTGTAATTGTGCCGGACTCTATGCAGTCGAATGAAGCAGAGCAGCTCAGTAAGCAAGAGAAAAATGACGTCTCCTTTTTACCTAATCTAAGAAGAATTAACAAGAGGCCCTCAGGTGACCAGGCTGGACTAGGAGGTCTCAGACTGGGCAAGTTGCCAGAAGGGAGTGCAAGGCAGTCGGCACCCTGGGGAGATGCAGCTTTACCTGGGCCAGCAGAGTGAAGGCAGAGAGGAAGCATGCTGTACAGAGACTTTGGAAATATACTACTGGAAAAGGCTAACACCGCATAAGGAGCAGGCGCAGAACACAACAAAGAAACGATGGATTCAGAAGGTCTGCAGAAGGTTCAAATCAGCGATATTCTAGGAAAGAGCGTCTTGGTGTATGCATGTTTATCATTACCTCTAGGCAAAAACACACATGTCAGGAATACTTCAATAGTACAGCATGTCATGGCTGGTAAAGCAAAAGGAGTGTTTCTAAAACATCTCAGAGTACACGTAATGGTCTAGGACCTGTGCTTGTTTCTAAAGTCAAGGAAAACATAAGTAGGGCTCTAAATTAAGTTTCACAATTGGTACTTCTTCTCTCCAGGGGCTGGTTGCACCAGCTGTGCGCAAGTTTACATGTCAGCTAGTTGTTTCAGATTTATGcataactaaattaaaaatgggTTGAACCACACAAATAAGTATGTATACAGTAGCTAGTATCTATTAAATATTAACACACACCCTAAGCTGTGACTAAACCAAAAGCATCCAATACTGCTTTGAGACAGATGACAGGTAATCACTTTCACTGCTTACATAATTTCTGATAACACAaagatattatatatttccaATATAACTACGGTAGTTGTTACTAGTTAAACACAACCGATTTGATATTTGTCGAATTTGCTCAGTGTTTACTATTGACTAAGTAGAGTCTTAAAATTATCTAAACAAACTTAACCTAAAAAAGGAACATACACAAAAATGATGCAGGCCAGGTTATGAATGTAGGCCATGAAGTACAGAAACATCTATTGTGTCTTTGTTCAGCTGTAGACAGGTTTCATATTTTACCATCTTTTTGAGACAATTATGTATTTttcagctattttaataaaaaacactgatgtgACGTG

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU100940 lncRNA downstream 43553 19325392 ~ 19418804 (-) True G74928
TU100916 lncRNA downstream 107306 19354093 ~ 19355051 (-) True G74911
TU100913 lncRNA downstream 112346 19344945 ~ 19350011 (-) True G74909
TU100915 lncRNA downstream 120421 19279652 ~ 19341936 (-) True G74910
TU100920 lncRNA downstream 172070 19287340 ~ 19290287 (-) True G74915
TU101154 lncRNA upstream 167779 19640821 ~ 19688118 (-) True G75069
TU101183 lncRNA upstream 272522 19745564 ~ 19746445 (-) True G75081
TU101206 lncRNA upstream 326343 19799385 ~ 19799625 (-) True G75092
TU101207 lncRNA upstream 331724 19804766 ~ 19804970 (-) True G75093
TU101227 lncRNA upstream 398100 19871142 ~ 19872681 (-) True G75106
XM_022672256.1 mRNA downstream 24743 19364598 ~ 19437614 (-) False ptprz1
XM_022672255.1 mRNA downstream 24743 19364598 ~ 19437614 (-) True ptprz1
XM_022672257.1 mRNA downstream 24744 19364598 ~ 19437613 (-) False ptprz1
XM_022672261.1 mRNA downstream 24745 19364598 ~ 19437612 (-) False ptprz1
XM_022672259.1 mRNA downstream 24745 19364598 ~ 19437612 (-) False ptprz1
XM_007246577.3 mRNA upstream 2508 19475550 ~ 19485147 (-) False fnbp4
XM_007246576.3 mRNA upstream 2508 19475550 ~ 19485147 (-) True fnbp4
XM_007246578.2 mRNA upstream 2508 19475550 ~ 19484727 (-) False fnbp4
XM_015605116.2 mRNA upstream 14081 19487123 ~ 19488636 (-) True lrrc10
XM_007246586.3 mRNA upstream 14081 19487123 ~ 19488634 (-) False lrrc10
TU100809 other downstream 389469 19070938 ~ 19072888 (-) True G74838
TU100745 other downstream 521893 18939174 ~ 18940464 (-) True G74791
TU100498 other downstream 1432610 17982747 ~ 18029747 (-) True G74591
TU100463 other downstream 1578571 17877026 ~ 17883786 (-) False nrg4
XR_002650248.1 other downstream 3683934 15761764 ~ 15778423 (-) False LOC103046265
TU101215 other upstream 386652 19859694 ~ 19865982 (-) True G75100
TU101358 other upstream 554120 20027162 ~ 20032027 (-) True G75207
TU101364 other upstream 614376 20087418 ~ 20100250 (-) False hsd17b12
trnat-agu_2 other upstream 1423061 20896103 ~ 20896176 (-) True trnat-agu_2
TU101746 other upstream 1797087 21270129 ~ 21273017 (-) True LOC111193105

Expression Profile


XM_007246582.3 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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XM_007246582.3 Expression in each Bioproject

Bar chart with 7 bars.
XM_007246582.3 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 80.
End of interactive chart.