RNA id: XM_007246588.3


Basic Information

Item Value
RNA id XM_007246588.3
length 3075
RNA type mRNA
GC content 0.45
exon number 15
gene id cnot2
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 19493922 ~ 19503421 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGAGGCCAGAGCAGGGTCAGGGGGTAAAGGCTGTTCACCCAGGATTCTCGGCTGCAGGATACACAGCCATCTTGGGTCTACGAGGAGAGGGGAAATTAATGCGGTGACGAACGGAATGTTCAGTGCTACAAGAAAGAAGTTTGAGGGGGTCGAAAGCGACTACCCAGATGAGAGCATGTACTATGGTCAGCCTTCGATGTTTCCTCATCGAACAGAGAAAGATATGCTGGCATCTCCCTCACCATCGTCGTCAGGTCAATTGTCGCAGCTTGGTGCAAGTTTGTATGGTCCACAAAGTGCACTAGGCTTCTCAATAAGGGGCATGAACAACAACAACCCTCAGTTAAACCGGAGTTTAACACAAGGTACTCAGTTACCGAGCCATAACACCCCAACAACGGGCGTCCCAACGATGTCCCTCCATACCCCACCTTCGCCGAACAGGGGAATTCTTCCCATGAATACCAGGAACATTATGAATCACTCGCAGGTGGGTCAGGGCATGAGCATGAGTGGCAGGACCAACAGTATGGGCAGTTCGGGCCTTGGCAGCCCCAACCGCAGCTCTCCCAGCATCATCTGCATGCCAAAGCAGCAACCAGCACGACAGCAACCTTTCACCATCAACAGTATGTCAGGTTTTGGAATGGGGCGAAGTCAAGGGTTTGGTATGAACTCTTTATCGAACAACATCTTCAATGGGACAGacGGAAGTGAAAACGTGACTGGACTGGACCTCTCGGACTTCCCAGCGTTAGCAGACAGAAGTCGGAGGGAAGGAAATGGCAACCCAACACCGTTGCATAATCCCCTGACTGGAAGGGCTCCCTATGTTGGGATGGTCACAAAGCCATCGACTGAGCAGTCGCAAGATTTCTCGATTCACAACGAAGACTTTCCTGCACTGCCGGGGCCTAACTACAAGGATCCAACGCTGAGCACGGACGAAAGCAAATCAAACTTGAACTCATCAACCAAGAGCAGCTCCAGTGCAGATGGCCCCAAGTTCCCAGGTGATAAAACATCAGCACAGAACAACAACCAGCAGAAGAAGGGGATCCAGGTCTTGCCTGATGGCAAAGTTACAAACATTCCTTCAGGAATGGTGACGGACCAGTTTGGAATGATTGGGCTCCTAGCTTTCATCCGAGCAGCTGAGACAGATCCCGGCATGGTTCATCTGGCATTGGGAAGCGACCTGACTACACTGGGACTCAATCTCAATTCTCCCGAGAATCTGTATCCTAAGTTTGCATCTCCGTGGGCTTCTGCACCATGTCGACCACAGGATATTGACTTCCATGTTCCCTCTGAGTACCTAACCAACATTCATATAAGGGACAAGcTGGCTGCAATAAAACTGGCACGTTATGGAGAGGACTTGCTGTTCTACCTCTACTACATGAATGGAGGAGATCTCTTACAGCTTCTGGCTGCTGTGGAACTCTTCAACCGAGACTGGAGGTACCATAAGGAGGAGAGGGTGTGGATTACACGAGCACCTGGCATGGAACCCACCCTGAAGACCAACACCTATGAGAGAGGGACATACTACTTCTTTGATTGTCTTAACTGGAGGAAGGTAGCTAAGGAGTTTCACCTTGAATATGACAAGCTTGAGGAGCGGCCTCATGTGCCAACCACCTTCAACTACAACCCGGCCCAGCAGGCCTTCTGAAACAGTCACTTAGCATCTATGAGCTCCAGGAGCAGACCTCAGGGCCAGCCACCCGGCGTGCCCAACCACAACCTGGTTTTATTCCTCACCTGTCTGGACAAGGACTGTGGgaaggggggagggggtggggggtctTCACCTTAAGAACTGAGGGGAGGGTCCCTGCCTTACAAATTATGTGCTGCCCAAAACAACACTCAAAACACaacattttcactgtttttaaataccctcttgcttttttgtttcttttctttcattttgagCACAGGTCTGTGTTTTGTTTACGCCTCAGATCAAAAGCCCATTTGGTCTTTGGCAGGAGAACTGACTTGCAgtacaacaaacacacactggtaAAACCAAGAGAAAAAGGCTACGTTTCGTTTTCCGAAACGTACTGTGCTAGTAAACAAGACAGACACACCAACAAatccaatacatgtgaatacAAAAGGGCGGAAGAAAAATGCAATGTTCATTGTTGCACTATTTAGtaataaaagaacacaaaaattgttttgtgcttttttatgtggggaaaaaaaatgctcttctccttttttttgtCTGGAAGGGTGCACATCCTGTTAACATCATGGATTCTCTTCCTTGTCCTTTGTTCCTCTCCTGAACATTCCTTTGACCCGTCATCTTAATCCTGCATCCGATCCTATACCCAGTCAGGTTTTCTCTGCCTAACTCCAGTAATTACAAAATCAGACTGTTTTAGTGACCATTGTGGAAAACAGCTTGTGGACCATCCTCACCCAGGGGGCTGTGAGATTACTGAGCTACATTGttccagaagaaaaaaaaaaaaaaaaaacacttttcagtCTTTGTTACGATTTTGTAATAAAcgtgtacattttttaattttttggacATCACATGAATAAAGATATGTATGTACgaatgtgtatataatatatatatatagatagctgtatctatatatatatacatgacgTCTATTTTGGAAAAAGGTAACTATTCTCTGCTCAGCCTCATTTTTAGGAGGTGAGTGGTGGTGGCATTATGTGttagaaacaaataaacaaaaaacaacaaaaaaatcaaaagagaCAAAACAATAGTGTTAATAATGTTGAGCTGCCAGACAGGGCTTCACGTTTGTTACCCTGTGCACTTAAGACcaagataaataaaacaaaaataaaaaaaggaaggcCTGACTTTCTCGAACCAAGGACATTCATACCCAGAAACACAGAGGGTGGAGACATTTCAGTTGCAGCTGTTTGAATAGAAGCATTTCATAGGAAAAGGAAAACCGGTACACCGCTAACAAAAGCCTGACCAGTCTTGTATTTTATGATCACGTTTAaagcttctttcttttctttgtaaTAAAGCAGAATGGCTTTCCTGAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K12605 CNOT2, NOT2; CCR4-NOT transcription complex subunit 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100987 lncRNA upstream 11935 19480351 ~ 19481987 (+) False G74951
TU100986 lncRNA upstream 12834 19477998 ~ 19481088 (+) True G74951
TU100875 lncRNA upstream 31837 19459973 ~ 19462085 (+) False tmem17
TU100845 lncRNA upstream 297507 19194542 ~ 19196415 (+) False cadps2
TU100846 lncRNA upstream 297774 19194373 ~ 19196148 (+) False cadps2
TU100995 lncRNA downstream 3697 19507118 ~ 19510980 (+) True G74958
TU100996 lncRNA downstream 3697 19507118 ~ 19507522 (+) False G74958
TU101010 lncRNA downstream 24239 19527660 ~ 19527911 (+) True G74970
TU101032 lncRNA downstream 37499 19540920 ~ 19542987 (+) True G74982
TU101038 lncRNA downstream 37499 19540920 ~ 19543821 (+) False G74982
XM_022672263.1 mRNA upstream 31735 19459958 ~ 19462187 (+) True tmem17
XM_015605117.2 mRNA upstream 34614 19454053 ~ 19459308 (+) True slc15a5
XM_007246574.3 mRNA upstream 131001 19341280 ~ 19362921 (+) True aass
XM_007246575.3 mRNA upstream 131001 19341280 ~ 19362921 (+) False aass
XM_022672254.1 mRNA upstream 159585 19330251 ~ 19334337 (+) False fezf1
XM_022672268.1 mRNA downstream 23791 19527212 ~ 19537617 (+) False LOC103044129
XM_022672266.1 mRNA downstream 25202 19528623 ~ 19537617 (+) False LOC103044129
XM_022672267.1 mRNA downstream 26327 19529748 ~ 19537617 (+) True LOC103044129
XM_007246591.3 mRNA downstream 37040 19540461 ~ 19560568 (+) True LOC103044412
XM_022672269.1 mRNA downstream 59633 19563054 ~ 19569137 (+) True amn1
TU100801 other upstream 408366 19082816 ~ 19085556 (+) True G74832
TU100573 other upstream 1038725 18454851 ~ 18455197 (+) True G74649
TU99974 other upstream 3205593 16286676 ~ 16288329 (+) True G74169
XR_002650242.1 other upstream 4572919 14891534 ~ 14921003 (+) False rpgrip1l
TU99159 other upstream 4844371 14648829 ~ 14649551 (+) True G73533
TU101007 other downstream 24570 19527991 ~ 19533073 (+) False LOC103044129
TU101298 other downstream 700198 20203619 ~ 20207922 (+) True LOC103028745
TU101630 other downstream 1519835 21023256 ~ 21025128 (+) True G75383
TU101641 other downstream 1585201 21088622 ~ 21096906 (+) True G75391
XR_002650259.1 other downstream 1747046 21250467 ~ 21264776 (+) True mov10l1

Expression Profile