RNA id: XM_007246591.3


Basic Information

Item Value
RNA id XM_007246591.3
length 4315
RNA type mRNA
GC content 0.40
exon number 4
gene id LOC103044412
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 19540461 ~ 19560568 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGAGGGATGGACCACAGGATCAGCCACTCACCTAGCTCCTCCTGCAGAATGTGGGAGGTGTCTGCTCAGAGTTTATTCAGAGTTTATTCAGAGTTTGTGTGAGAAAGACCGCCAAACAACACGCGCGGAGGAAAGTAAATGAGGCTGATGTTTCTTCAAAACGCGATTGCATTAACAGTCAGACTCTTGGGACATTGATCAGAATCACCAAGATAATTTACATTATCTATGGTGTCAACAATGGCAAAGCTTGGATGTGGAGATTGCTGTGCAGATAACACAAAAATCCTTGAGACCATTCTGAAGGGAAAGCACTACAATTCACATGAGGAACAGACAGCATTGGAATGCCACTGGAAAAAAACGTCATCAGTTACCAGTGACAAGATTGCATCACAGCCTCAAGACCTTGATAAATCTTGTGTATACCAAGCACAAGTTTGTCATTCTGAATGGGCACCAATGGGAAAAAAAGACTCTGGTTGCAGGGAGAACACAAATCAAGGCAGTGCTGGGCAGAACTCAAACCAACGTGGATATATAGGACTGTTCTCGGGGGAAATTGCTCCTTTAAACTTGACTGTACATAGAATTTTGAACAGTGCAACCCACAGCAGTATGCAAAACTGCCATCAACAAGTAAGCAATGTTAATGCCTTGCCCAAGGACTGCATCCAACAAAGAGCACACACTGATATCAGTATTCATCCCAGTGTTTCACATCAATCTGGTCTTGGGAATAAAGGCAGCAAAATGCCAGATGATCTAAATGCAAGTAAGATGCAGGAATGTGTTCCactcaaaaaaaggaaaaagtattTGGTTCAAGTGACTGAGGATAATCCTGGATATGAATTTTCTGCTAAAAACAATGTTTCAACAGTGGATCAAACGGGCAGTCCAGAtaaattgtgtgtaaaacgCACATTGGATAATGGCATAAGACCCTTTACtaagcagtttgaaaagagccATCCTGTGACTTGGTCTAAACCTGTGCAGCCTTATCAGCAAGTGTACATgcgcaaaaaaaatgttgctatTGTTTTTCCATTACCGCTGGAAGTTGTAGAATGTTTTAAGTCCTTAACGAACCCCACAAAGGACTCTAAAGTTAGTGAAGAAGGTGTTAAAGCAAGACCTGTTGGCCCACACCCTGAACCTGCACTGCTGCACCCAACAACAAAGGAAAGTGACTTGATTTCCAGTAGCACAAGTTCTAGTGTGGCACAAACAAATCATGGTTCACCAGAAATGATCACACAGTGTTTGCCAGagactggattttctcagtgcTCCAGACCAGAAGCTCCTATTCAGGCTAAAGACACGTCCCACCAAAGAGACAGTTTGTACTCTGTGCCTTTGTCCTCGACTAGTGTCTGTATGAGAGAAGAATCATCTAACATGGATAATCAGTGCAGTGCTGGCCATATTCATGAAGATGTTACCAcgacaaatgaaataaatattaatggtTCAGAAAGTCAGTCGGTCACTGAAGACAATGAACAGTGGTCTCTTCAGAGGTTGCAAAGATTAATGTTTGACTTGGAGAAAAAGCAGTCAATGTCTCGTAAGGAGGTCCATTTTGCAGACCTTTCAAGTGAGATTCTTAGGTTGTTTTGGAATGAAGATTTTCAAGAACTTTGTGAAACTGCTAAATCAGATTATTATGTCAATATCATGAAAGAAGTTAAACTTTACAGTGGAAAGAGAAATTCTGTAATACTTCAAGAATGTAGAACATTGCAGGACTTGGACCATGTTGCAGAGGATCTTCACAACACTAGGCAAAACCCTGTGGTACCCACAGTTGAGTCAGAATCATTCCAGTCTTCAGTGTTGAATCCTAGTGATTGCAATAAGAGCACAGCCAAAGTCAATAATGATGAAATAAGAATGGAAAGAgatgaaaatgtaaaagttcCTGAGAATTATGTGGCAGCAACATCAACACAGGCACAAAGTCAGCCTCTACTGACTGTACATGAAAATAACTGTAGTGTTGAAGAAGATCTTGCTAGAGTGTTAACAGATAAGTCGACGGACATGGATGTTGAACATAAAGACGATTATTCAAACAGAGGACCAGTCGAAACAAAGAAGCCTGTGTTTGATTGCTTAAGTAAGCCAACTTTAACTGAGTGTCCTGACAACAGTAAGAATGTAACGGTGAACAGTGAAAAAGGAGAGGAACTCCctgaaaataaaactgcaagAAATGAAGTCTCTTTAGTGAGGTCTTTGAATGAGCAATCACTTGCGATGAGTGATAACTGCATGCATGTAAATTCAGAAGAAGACCAGCCCACAACTGAGATGACTTGTTCATTAGAAGACTGTAACAATGCAGATTCAACAGACTGTTGTTCTTTCTTGGAAATAAACGTTCTTTCACCAGAAACAGCCAAGAAACTTTATTTTACTGAGCCAAAGAAAGATGTCAAGACAATACACAAAGATGTCTCCGTAGAGACCTGTACAGAGAAAACCGACCAAGTCATTGTTTATCATTGTGACTTTATTCCTGAGGATGACACGCAGATAAATACTAATGTGAAGCTAGCTAAGAATAACATTGGAAATGATGGCGCACAACAAGTCAAACAGTACTGCTGTCTTGCTAAATGGTTCCAGGATTTGGGGTATGCATTTAACGTTCCATGTGCGTGTAAGAAAAACACTGCCAAAAGAGTGACTGAAGAGAGCAGCAACATTCCAAGTGATGCCAACACAGATAATCTTGAGATTGAGGAGGTAATCACAGATTATGAGGATGTACGTAAAATAGCAAGTGCAATATCTGTGCACCAAATGAATGAACCCCTTAGAACAGGTGGGACACGTGAATTCAAGAAGGGAAAGCCGGCACATGATTCCTGCAAGAACAAAACCACCAACCACACCAGTTGCAGCAAGTTAGTCGCAAAGTCTGACCTTATTCCATACCTCGGTCAGGACCTGTCACAGGGGGACTCGTCTTTCCCCTTAACACCTACAGGTTCAGATCTTCAAGTTGAAGAAAAGGACAAAAAGATCACGACTCCAGAGGTCCAGAAGGAGAAACGGACGGTAAATCTGGCATTATTTGGATTATCTAGTCTGAATCACAATAAAACAGTAGGAGTAACAAGGAATAATCCTGAAAAGAAAACAGGTTTTGGAATCAGATCTTTTGATACAGAGCATTTCCCTCCAGCAACTCTTAATGTAAGAGTGAATAATGCAGTCAGGTTAAATAATGATGCCATTGGGAGGCAAACTGCAAAACAACGCATTTTGAAATCCTGGCAGAACAGCTTAGCACCTACACAGATGTTTCCCGATAAACAATGGTCAAGGAAGCTAAAAAACGGAAGTAAATCAAGAACTGAAACTGCAGATATTTTTGAAATTGAAAAAAGTATCACCCCTACAGCATTTgatgcaatgaagaacttgctgtCAACTCAACAACACATTCAGACACATGAATCAGAAATTCCATCCCCAACAGAGCAACAGAAAACCTCAGATGGTCAgtcaaagaataaaaaacattccACCAAAAGGAATAAAAAGAAGAATAGGATACTTGATTCAATTAGTCTTACCAGGAGAAAGAAAGGACTGTATGCACATAACAAGAGTAAATCAAGTGCTTCGTCCGTTGAGCTACCCTGCCCTTTGGGCCAAAGTAAACATGAATCAAGCAAGCGTTCCATGCTTGATTACAGAATCCTGCCAGAAACTTTCAGCTTCAGAGATGGTGGCAGTTTGATGAAAGCACATCAGTCTAAAGACGCAGCTTATGGTcaaaaaactgaaactgaaatgcCAAAGAAGAGGACAGTGGAAAATCTAGTAATAGGCGTTTGGTGTGTCAGCCCTAAGAAGAAAGGAAAGCTTAAGTCCACTTTACCCTCCAGTTCTTCTGTGTCAGCCAGCACCTTCCAAGAATTCAAGAAaagatatgaagaaaaaaagattgTGCATCCTAAAACTATTTGAGAATATGCTAGAAAACTTTATAAATCAAAACATTTTCTGTACTAGATATATGTATTGATCTAATGAGAAGGAGATGTGGAACCCCTGGACAAGATTGCACTGCACACTCCATTTAAGGCTGTTAGCTGCTCCAAGGATTATGTTTGTGTGCAATGTTTgatactgtaaaatactggtTTTGGTGATTTTCATTTATAAACCTGTACCTACTATCactgtttaattttatgatcATATATGCACAAAATACattgtatgtatttaaatattatgtcatttttaaagatagatagatagatcaaaaGTCATAGGATGGCTGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101010 lncRNA upstream 12550 19527660 ~ 19527911 (+) True G74970
TU100995 lncRNA upstream 29481 19507118 ~ 19510980 (+) True G74958
TU100996 lncRNA upstream 32939 19507118 ~ 19507522 (+) False G74958
TU100987 lncRNA upstream 58474 19480351 ~ 19481987 (+) False G74951
TU100986 lncRNA upstream 59373 19477998 ~ 19481088 (+) True G74951
TU101054 lncRNA downstream 32997 19593565 ~ 19595241 (+) True G74992
TU101064 lncRNA downstream 39219 19599787 ~ 19620245 (+) True G74996
TU101058 lncRNA downstream 64091 19624659 ~ 19649384 (+) True G74995
TU101087 lncRNA downstream 171448 19732016 ~ 19733038 (+) True G75017
TU101106 lncRNA downstream 201206 19761774 ~ 19765765 (+) True G75026
XM_022672268.1 mRNA upstream 2844 19527212 ~ 19537617 (+) False LOC103044129
XM_022672266.1 mRNA upstream 2844 19528623 ~ 19537617 (+) False LOC103044129
XM_022672267.1 mRNA upstream 2844 19529748 ~ 19537617 (+) True LOC103044129
XM_007246588.3 mRNA upstream 37040 19493922 ~ 19503421 (+) True cnot2
XM_007246589.3 mRNA upstream 37040 19494067 ~ 19503421 (+) False cnot2
XM_022672269.1 mRNA downstream 2486 19563054 ~ 19569137 (+) True amn1
XM_007246592.2 mRNA downstream 2486 19563054 ~ 19569137 (+) False amn1
XM_022672273.1 mRNA downstream 13746 19574314 ~ 19590443 (+) False LOC103045341
XM_022672271.1 mRNA downstream 13747 19574315 ~ 19590443 (+) True LOC103045341
XM_022672272.1 mRNA downstream 13747 19574315 ~ 19590443 (+) False LOC103045341
TU101007 other upstream 7388 19527991 ~ 19533073 (+) False LOC103044129
TU100801 other upstream 454905 19082816 ~ 19085556 (+) True G74832
TU100573 other upstream 1085264 18454851 ~ 18455197 (+) True G74649
TU99974 other upstream 3252132 16286676 ~ 16288329 (+) True G74169
XR_002650242.1 other upstream 4619458 14891534 ~ 14921003 (+) False rpgrip1l
TU101298 other downstream 643051 20203619 ~ 20207922 (+) True LOC103028745
TU101630 other downstream 1462688 21023256 ~ 21025128 (+) True G75383
TU101641 other downstream 1528054 21088622 ~ 21096906 (+) True G75391
XR_002650259.1 other downstream 1689899 21250467 ~ 21264776 (+) True mov10l1
TU102047 other downstream 3194584 22755152 ~ 22772561 (+) False LOC103028957

Expression Profile