RNA id: XM_022672269.1


Basic Information

Item Value
RNA id XM_022672269.1
length 1501
RNA type mRNA
GC content 0.41
exon number 7
gene id amn1
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 19563054 ~ 19569137 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTTATTTTGAAATCGGTGGACACACGGGAACTTTTATTGTGCGCACCACGATGTAAACAATGTTAGCGGGTGTAAATAAACCGACTGGAACTAGAGGTGCTACGTGATGTATACTGTTTAAAAGATACAGATAATTGTTGGAGGAAATTCAGCAGTGTCAGACACTCTGTCCCCTGTCTGCACCGCTAGCTCTAAGTGTTTCTGTAGCTGCTGAGTTGTTGAGTTGTAGAAGCGTGAGCAGCGTCTGCTGCTGTGAGGAGCGATGGCAGCCGTGGACTCCCTGATGAACCTGAGCGCTGTCAGTGTGGCCCAGAATGCCGAGAAGTACAGAGACTGTATTAGAACACTACCATGCAGCGCCAAGGACAAGCTGGTCAGAATAATGACAGCTCAGGGCACAGTCACTGATTCCAACATAGACCAGGTGCTTCATCCTGGAATCCGCACACTGGAGCTGCAGAACTGCAACATCTCAGACTCTGCACTTAGGAAAATCCACTGTCCACAACTGAGGACAATATTACTCACAAGATGTGTGCACATCACATCAGAAGGTTTGGAGGACCTGGCATCCCACTGCCCATGTCTTCAAGTGGTTGATCTCACTGGATGTACAGCAGTCACTGATCAAGGAGTACAGGCTCTGGCCCGAAGCTGCAAGTGGCTAGAGGTCATTTCGCTGATGGAATGCACCAGGATCACTGATGTGGCCTTGACTGAACTAGGGGCCAACTGCAGGTTTCTGTACAGCATCTATTTTGGTGGGACAAATGTCACTGATGAGGGTGTTCTAGGTCTTGCAACTGGAGTTTGCAGCCAAAGCTTAAAGaGAAAGTGTACAAATATTCTGAACCGCATTTTCCTCAAAAAGGAATTACAGATGGTACGATGCCATAACCTTACGGACAAGGCTGTGGCTGTTATTCTGTCAAACTGTGCAAATATTAGGACCTTCAACTTCCATGGATGCCCACTTATTACAGaCAAATCAAGGGAGGCACTTCATAATCTTATTGGTCCAAATAAGATCCAGCATGTCTCTTGGACTGTGTACTGAGAAGGAGCTTCATTTCTGTTTTGAACCATTTCCACCAAAAACCATTCCACATATCTGTGTAATTAAAGATACAAACTATATGTGACAAttctgagagagaaaaaacaagtCTAAATAATTCCTGGAtggaataattaaaagtaaagaagAGGATCAAAATATCGTAAGAGTTTGGAAGAAAAACATGTTATGTAAATCCTCTAATTTGGGTGATGTAAATATGCATACTCTTTATTTAACATACATAACActacatttttgtgtatttatttactcaAAGTTGCTCAAAGTGCGTATTGACTACATAAAtaacatatatgttttaaaatgactGTATTTCTGCTGAATCTTATATTTAAGTTATGAGAAAAACATTCAGATAAGATCTTTGtttcaaatatgtttttgttcaaaattaattaaagaacATTCCCATTTGTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101038 lncRNA upstream 19233 19540920 ~ 19543821 (+) False G74982
TU101032 lncRNA upstream 20067 19540920 ~ 19542987 (+) True G74982
TU101010 lncRNA upstream 35143 19527660 ~ 19527911 (+) True G74970
TU100995 lncRNA upstream 52074 19507118 ~ 19510980 (+) True G74958
TU100996 lncRNA upstream 55532 19507118 ~ 19507522 (+) False G74958
TU101054 lncRNA downstream 24428 19593565 ~ 19595241 (+) True G74992
TU101064 lncRNA downstream 30650 19599787 ~ 19620245 (+) True G74996
TU101058 lncRNA downstream 55522 19624659 ~ 19649384 (+) True G74995
TU101087 lncRNA downstream 162879 19732016 ~ 19733038 (+) True G75017
TU101106 lncRNA downstream 192637 19761774 ~ 19765765 (+) True G75026
XM_007246591.3 mRNA upstream 2486 19540461 ~ 19560568 (+) True LOC103044412
XM_022672268.1 mRNA upstream 25437 19527212 ~ 19537617 (+) False LOC103044129
XM_022672266.1 mRNA upstream 25437 19528623 ~ 19537617 (+) False LOC103044129
XM_022672267.1 mRNA upstream 25437 19529748 ~ 19537617 (+) True LOC103044129
XM_007246589.3 mRNA upstream 59633 19494067 ~ 19503421 (+) False cnot2
XM_022672273.1 mRNA downstream 5177 19574314 ~ 19590443 (+) False LOC103045341
XM_022672271.1 mRNA downstream 5178 19574315 ~ 19590443 (+) True LOC103045341
XM_022672272.1 mRNA downstream 5178 19574315 ~ 19590443 (+) False LOC103045341
XM_022672274.1 mRNA downstream 5178 19574315 ~ 19590443 (+) False LOC103045341
XM_007246594.3 mRNA downstream 6730 19575867 ~ 19590443 (+) False LOC103045341
TU101007 other upstream 29981 19527991 ~ 19533073 (+) False LOC103044129
TU100801 other upstream 477498 19082816 ~ 19085556 (+) True G74832
TU100573 other upstream 1107857 18454851 ~ 18455197 (+) True G74649
TU99974 other upstream 3274725 16286676 ~ 16288329 (+) True G74169
XR_002650242.1 other upstream 4642051 14891534 ~ 14921003 (+) False rpgrip1l
TU101298 other downstream 634482 20203619 ~ 20207922 (+) True LOC103028745
TU101630 other downstream 1454119 21023256 ~ 21025128 (+) True G75383
TU101641 other downstream 1519485 21088622 ~ 21096906 (+) True G75391
XR_002650259.1 other downstream 1681330 21250467 ~ 21264776 (+) True mov10l1
TU102047 other downstream 3186015 22755152 ~ 22772561 (+) False LOC103028957

Expression Profile