RNA id: XM_022672271.1


Basic Information

Item Value
RNA id XM_022672271.1
length 4034
RNA type mRNA
GC content 0.48
exon number 27
gene id LOC103045341
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 19574314 ~ 19590443 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGGCGTTTGTAGAGAAAACATCGCCGCCCAGTGCCGTTCAGGGCAGGTGCCTGGACAGATCTACCAGAGAAAGgTATGTTCCATATAAAAATCCAGAAATTCAACCACTTATTAACCTTGAATGAGGATGTAACATGACTAAGACTGGCAACTTGTCACTGACAATGACCATCATCCATCATTAAATGTGAATAATCAAGCCATTCTACAAACACACGCAGAGCTGTATCTTGATTTCAATGTACACCAGAGAGCAAAGACAGCAGTTTACAAACTCGTTCTGATTCAGAATGAGAGCAGCAGTTTAGGGAATCTGTTATGGAACTGTATCTGAATCCTGTGTGGGTGACTGGTCCTGACAGTGGTGTGTGGAACGCCGGGCTCTTCCTCCGTCAGTGTGTTCATGAGCTCATCAGCTGATCATTCACAGAAGAGGAAGGCTGGACACACACTCAGTGTGTTCTGTATATGACCATCACCATGGACACCAGGGCTGCCAAGGCCGGAGCTGCAGCAGCCTGTTCATAGAATAAAAAGCACAGAGGCAGTGAATGacggagaggaagaggagagtgATCGTACGTGAAGATAGCAACGATCACTCATAAATATGGCCAAGTGGAGCGGAGAGGACAGAATGGTTTCTCCGATGGCAGATTGGGACTGGGACTGTGGTCTGAATCCTCGAGGATGCCGGAACTCTTTCAGGTCTTTAagccccttttctctctctgagttTGACCTATGGGAGAAGTCGCTCTTAAAGACTCGGTcctcagcatggagttgtatgGGTTTGTCTGGATCAGGTCACCGCTCCAAAATCAGCACCAGCTCTCTAGGCAGCCAGTGTGGAGTAAAACAGAGTGAATCAGCCGGTTTGAAAAGGTGGCGGTCTGCCTCTCGCCTAGCACCTGAGGGTGCTCCTCCAGCCTGCTCCTCTCAGGGGGTAGAACTGAGAGTTGCCGTGGAGGAGAGCAGCATGAGGAGGGCAGAGCTGATCCGAAGGCTGCGGCTGGCTCAGGGAAGTCTGGACACTCAGACAGATCTCCTGAAGGCCAAGGAGAGCCAGCTTCAGCACAGCCAGAGCACCACACAGATGCTGGAGCTCAAGCATAAGCAGCTGGCAAAGGCATTGAGTGCTCTTGAGGAGGAGAAGGATGCAGTTGAGCTAAGCCGCTATAAGGAGAGCCGTTGTCGGGCAGAGCTGCAGGAAAAGGTGTTGCGGCTGGAAATGGACCTGTTTAGGATGAAATCAAGCTTAGACATGAAAAACTCTGATGAAACTTCAGCATCACAGCCAAACTCACAGCTAAACAGGACCATGCCTGTAACAAAGGATGACTTTATCAAAGAGGGACAGAaccagacagaaacagagatgaAGAAACTGAAAAAAGCTCTCAGAGAGGCTGAGGAGAGAACAGAAACCCTGGAGGCTGAAAGGAATCATGCAGTAAAACAGCTCTATTCTTCTAAGGAGgGGCACCGCAAGGCACTGAACCAGATTGAGGAGCTGAAGCAGAAGCTTGGAAAGTCTCTGCAGGTCCAGAGTGAGCTGCAGGAGCAACTCAGCGATGCCCGCAGCCGCTTGGGCCAGCTGGAGCTGGAAAAAGACTTGCTCTCCACTAAAACATTGCGGTTGGAGGACGGTCTAGAGGACCTAAAGGCCAAGCTTTCTGCAGCTTTAGCTGATAAAGACAGACTGGTGCAGGAAAAGGCTGACCTGCATCAAAAGACCCAGAGTTTGAAGTTGCAGCTTCAGAGAGCCCAGCTGGGTAGGGAAGGATTCACCGAGCAGGTGTGTGAGCTCCACTCAGAGCTGACTCAGGCCAAGAGCCAGGCCAGCCGACAACAACAGAATACATTACTGATGAAGGAGGAGCTGCAGTCAATCAAAGAGGTAAATGAGAAGCTTACAGCTGATCTTGCAGCAGCTACAGAGAGACTCCAGGAGACTTTTAAGAAGCTTCATGAGCTGGAGGCTGAGAGACTGATCCACACCAATCAGATCACAGCTCTAGAGACTGAACGCTTGCAGCTGAttggagagaaggaggagaTGGTTGATGTGTTTGATCAGGGAAATCAGGAAGAGCTCAGAGAACTGAGGGAGAAGTGCTACCACCTCAGGGATTTACAGATAACTTTGGAGCAGGAGAATCAGGACCTCCGGGCACAATGTCAGGGTCTGGAGAAGAAAGTGCAGAATATGGAGGCGGAGTATGGGTGTAAAGAGGAGGAGCTACTGCGCTTGGAAATGGAgctggaagaagaaaaggaggagCAGAAGAAAGTGGCAGCCCATTGGAATGAGCGGTGGCTGGATATCTCACTGGCTCTGCAGTCCACTCAGGCCAAACTAGAGGAGACTAAGAAACATCATGAGGAGAAAGATACAATGAGGGAGGACATGGCAGCAGAATTGGCCAGCATGGTGGAGACACTGGAGACACAGCTAAAGAATGGACAGGATCAGATCCAGAGCTTACTGGAACAGAAAACACAACTTGAGACAGAGATGTCCCGAGTCAAGAAAGAAGCTGGTGCTTTGGAGCGAGTGGAGCTTGATGCCTGCAGACAGCAGCTGGAACTAGAACAAAGCAGGAGACAAAGCCTACAGCAGAGACTGCTGGGAAACCCTGTGTCTCTGGAGGAGATGGAGCTGGTGCAGGTGAAGGCTGAGCTGCAGAAGATGTGGGACATGCTAAAGAGCCGGGACACTGAGctggaggagcagcagcaggagctgcagTCTGCTCGAGGCCAGGTGACCCAGCAGAGCAGTGAGGTGCAAAGGCTGGAGCAACAActgtctgagagagagcaggagctgAAGGAAAGAGATCTCATTTTGAAGAGCATAATGAGTCAGcaagacaaagagaaaaaagaaacccAAATGAAACTAACTGCTCTAGAGAAAGAGCTTGCTGGACTTAAAGCACTGAAGACTGAGCAGTCACTGAACACTGTTCAAAAAGACCCTCAGACTTCTGAATCTTTGAAAGCTAAATTAGAGGTGACAAAGAATGAAGGGACAGCTGAGAGACCACATACAACAAAACCTCCTCAACAGGACAAAGAACAGAAAGGATCTCCATCAGTTACCAGAAAGGAGaaatcagtcagcattaacaacATAGACCCTGACCACCAGAGAAGGCTAATCACAGAACAACTgaagattttatttaaagagagagaacagctgGGCGATAAAGCATCTACAGCACTCCAGAAAAGACCTACCTCAGTGATCGACTTGAGTCCAAAGTCTAAATCTATGAAGAATGTGGAAACACTAAGCAGTGAGGGGAAGAATCAGCAGGAGGAGCACAGACAGGCTGTGAGTGTCCAGCAAGGGGCAGAAGAGAACAACTCAGACAGTCAAGAGAGAGCTCATTCAGAGCAGATGACCTCTGAGGAAGGGCCACAGGTTCAGCAGATGTCAGCacagagagtggaaatggaggagttAAAAGACACAAACGAGAATCGTCTCAAAGCCACGCTGAAATTACAGCGGAAGTTCCAGGATGTAAGACTGATTAAAACTAGTGATGAGGCACCAACCATTGTACCCTGTGTTCCTGGCTTCCTAAATAATGAAGAAGAGAAACTTCAAATGAGACCACCCTTGCTATGTATAGAAGGAACATTCACAGCCAGGCAGGTGGAGGTGTGTGACTCAGGCATGGAGGATGAGGAAGAAGGCACCAAATAGTGTTCACCTGAATAAATATGTTATTTGAGCTTTAAAGCCTATGGTTGGAAGAGTCACTGCATGAActgtattattcatttaatgaatACACTTTTAGAGAAAGTGCCTCATGGCTTTTAAAGCTTTGGCACTAGATTAAGCCTTACTATTTGTTTGATACTAAAAACTGATCTCTAACAAGACTCTTAAGGTGGCAAAATACAATGAGGTGTATTTGGTGACTTTCCTCTTACATTACTAAGACTATGTTAAACATTTGAGTTGTGGTTAAATTTGTGATTACTATccaataaaattaataacaacA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101038 lncRNA upstream 30494 19540920 ~ 19543821 (+) False G74982
TU101032 lncRNA upstream 31328 19540920 ~ 19542987 (+) True G74982
TU101010 lncRNA upstream 46404 19527660 ~ 19527911 (+) True G74970
TU100995 lncRNA upstream 63335 19507118 ~ 19510980 (+) True G74958
TU101054 lncRNA downstream 3122 19593565 ~ 19595241 (+) True G74992
TU101064 lncRNA downstream 9344 19599787 ~ 19620245 (+) True G74996
TU101058 lncRNA downstream 34216 19624659 ~ 19649384 (+) True G74995
TU101087 lncRNA downstream 141573 19732016 ~ 19733038 (+) True G75017
TU101106 lncRNA downstream 171331 19761774 ~ 19765765 (+) True G75026
XM_022672269.1 mRNA upstream 5178 19563054 ~ 19569137 (+) True amn1
XM_007246592.2 mRNA upstream 5178 19563054 ~ 19569137 (+) False amn1
XM_007246591.3 mRNA upstream 13747 19540461 ~ 19560568 (+) True LOC103044412
XM_022672266.1 mRNA upstream 36698 19528623 ~ 19537617 (+) False LOC103044129
XM_007246603.3 mRNA downstream 69830 19660273 ~ 19688110 (+) True LOC103047790
XM_007246635.2 mRNA downstream 182044 19772487 ~ 19786105 (+) True LOC103030754
XM_022671921.1 mRNA downstream 252859 19843302 ~ 19844222 (+) True LOC111193059
XM_007246615.3 mRNA downstream 264155 19854598 ~ 19858835 (+) True LOC103024220
XM_007246614.3 mRNA downstream 268990 19859433 ~ 19872712 (+) True LOC103023471
TU101007 other upstream 41242 19527991 ~ 19533073 (+) False LOC103044129
TU100801 other upstream 488759 19082816 ~ 19085556 (+) True G74832
TU100573 other upstream 1119118 18454851 ~ 18455197 (+) True G74649
TU99974 other upstream 3285986 16286676 ~ 16288329 (+) True G74169
XR_002650242.1 other upstream 4653312 14891534 ~ 14921003 (+) False rpgrip1l
TU101298 other downstream 613176 20203619 ~ 20207922 (+) True LOC103028745
TU101630 other downstream 1432813 21023256 ~ 21025128 (+) True G75383
TU101641 other downstream 1498179 21088622 ~ 21096906 (+) True G75391
XR_002650259.1 other downstream 1660024 21250467 ~ 21264776 (+) True mov10l1
TU102047 other downstream 3164709 22755152 ~ 22772561 (+) False LOC103028957

Expression Profile