RNA id: XM_022672275.1


Basic Information

Item Value
RNA id XM_022672275.1
length 4260
RNA type mRNA
GC content 0.44
exon number 8
gene id LOC103045635
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 19596930 ~ 19622548 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCAGTGAGTGGTAGCCCCCCTGATCGGCACTCCGGGAGCTGAGGTGAGCTCAGGCAGGCATTTCCCTTCGTCTGCCCCATCCCTCCTCTCTGTCtttacaacagaaaaaaaccCACCATCGATTTCCCCCCGCGGAGAGCCACTATTATCGGGGGACGGTAAACACTCGGGTGGATGCGAGCATTATCTATCGGAGCGGTGATCTGATCAAGCGCGGACAGCCCGGTGGAAGAGAAGAAGCGACTAGGAAGGAAGGAGGGATGGTGGACAACTCCAGCAGCGGCAGCAAGGCGCAAATGcCCATCTTATCTCAGGACAGCGTCCTGGCAGGAGTCTTTTCTCAGGCAGCGCTTGGTGGTGCATCTGGTGTCAAGCTTGAAGCTGTTATGGAACAGCTCCAAAGGCAGCAGCAAGCAAAACTAGAGATGGAACGAAAAGAGAGACACATCAGGGAGGCCCACATCCTCTACGCCCAGCAGCTGGCAGCACAGCAAGCCATCATGGCTTCAGCAAGGGCCCAGGGTACTCCACTAGGCCCTGAATTCTTCGCAAAGAGCTCCCTCGAAAGAATGCCGAAGAGCATCCAAGGCCAGCCTCAGCCCAGCAGGGTTTCTACACAAAGCAGCGTGGACTCAGTACGCGAGGAAGACTATGAGGATGAGGCAGACCGAGGAAAAGGCTCAGCAGGGGAAGATGATGAAGACGATGAGATGATGGATGGAGAGGAAGGTAGTGAGGATGAAGAAAGTGAAGGGTTGGAGTTTCTAAGGAAACAGAGTCTCGCTCTCCAGCAGGCAGGTGTGGGGGTTCCTCCATATCCTTACCCTGTCTACGCTGCTTCTCCCTCGGCTGCCAAAAAGCGTGCCCGCTCACCCCCACCAAAGGTGAAAGATGAACCAGAAGACAGCCCCTCTCCTACTGAGCAGCACTCATTCAGCACACCGAACGGTCTGGGTGACTGGAGCTTCGATGAGTCAATCAAacagCTTTATGAACTGGACAACGACCCTAACAGGAAGGAGTTTCTAGATGACCTTTTCCTTTTCATGCAGAAAAGAGGTACACCTGTGAATCGGATCCCCATCATGGCCAAGCAAGTCTTGGACCTCTATAAGCTCTACAAACTTGTTACAGAGAAAGGAGGACTGGTAGAAGTGATCAATAAGAAAATTTGGAGAGAGATCACCAAAGGCCTGAATCTGCCCACCTCCATCACCAGTGCAGCCTTCACCCTCCGCACACAATATATGAAGTACCTCTACCCGTATGAATGTGAGAAGAAAGGGCTCAGCTCTCCTGGTGAGCTACAAGCTGCCATTGACAGTAACCGCAGAGAGGGTCGTCGCCCTGGCTACAGTAATAGCCTTTACCGCTTTTCTCCCTCCCCCAGTGGCGGCGCCCCACACCTCCTCTCTCCTCCCAAAATGCACCTGCCAGCGTCTGGACACAACGGCTTGCAGAGCACACCTACTCCAGCCCTTAAGAAAGCAACAGTTCCTGAAGATGGTCCAGCCTCTATGTTGCCAGGTCGACTTCCCCTAGCTTTGGCTCTGGgtcaccagcagcagcagctggccCGGGCTGCAACCCTGGAGCAGCTGCGTGAAAGACTGGAGACTGGCATGGGGGCAGCAGCAATGGCTACAAGTGCTGCTGCCATGGAGGCACCAGAGAGGAAAATGGCCCGCCTGGCAGAAGAGCAGCAGAGGCTGCTGCAGCAGGCTTTCCAGCAGAACCTTCTTGCCATGGCATCGCAAGTGAACCCTGCTAACCTGCGCATGAACAGCACCAGTGCACGTGAGGAAAAGCAGGATTTATCTCTCAGTATCTCTTCAAATGGATCAGCCAGTATCACCGTGTCCATTGAGGTCAATGGGATAATTTACTCAGGTTCCTTGTATGCTCAGAAGTCCCCTGCAGCTATGCCTAACCCTGCCACAGCTACATCCATATCCCACAGCTCCACGCACAGCCCCAGCCTcgcctcttcctcctccaccacctcctctTCCTCAAAAGGCCCTGGTTCTGTGGAGCCTGCTGCTGTCTCTCCTTAGCTCCCAACCACCTGCCTAACTATGGTCTCCCTCTCCTGGAGAAGCACACCCTATCTGTGGAGAGACTTTGACCATTCAGTGGTCTGTCAAAGCCAAGTCTACCTCCTTTTGAGACCCATGAGGCTCACTTTCACTGAAAGAGGCCTTCACCCTCGAAGAGTTTAGTAACTGCTCTACCCTGTTGCAGATGGGCTCTGCTCTTTGCCACATGCCTGCTGCAAACACTCTCAGGACTTGGAAGATCATGATATTGATCAGATCCAAAACAACAAATACCTCATTTACCTCATTATCTTGAATGAAAATGCTGTTATGGGCACATCTCTGTGCTCCACATGTTTAATACCTGTACTATTACCTATGCATTTACATCCATATAATCATGTTTACAAACACCACTGCTTAACAATCATGGCAAAAATATTCTGCCAAAATCCTACAGTGGGGTTTGAacaagtgactttttttttcatcagtacATTGTTTTGTGTAAGTTTGGCCATATTTATCTTATGCACACCAACAGTAGATGTACCAGGGCTAAGTACTCTGATTGCTGTTTTGTGGATAAAtggtttttctttttgttaattttgctgaatttcaAATGGACCACAATCCCATTAAGTGTTATTTGCAGAGTTATTTTGGTTAGCAATGGGGtcaaacttttcttttaattttttattaagtatatttcTTCTTgatttgattgtggattttccATTATGTTTAGTTTCTAGATTTCCAAAAATATAAAGTTGATTTTGAAAGAGTTTCAGGTATAGATTTTGAAAAGAGTTTTGAGTAttgaatctgcagtttacacaGCTGAAAGCATACTTTTTGCTATTATTTAGACATTTTATAGACAACAGATTGGTCCAAAAGTAATGTGTACCACTGTATCAAGATATATTGTGTAGGCTTAACAGTAGAGGGGGACACCTGGTGTTCCTTAAGTCAATCATTTAGATGGCGTTGGACGATCAGTTATAGGCTCACTAATCTGGGCCTTTATTAACTTGTTATACCTGGACTATGTGGAGAAAGAGTAAGGAATTTTTTCAGATATACTGATATATCAAATTAGGTATAAAAAGGCATGAtcatgttaaaatcaaagaaatatcAGGGAATCTGTTCACTTAAGCTGTAAAAAGTTTTCTCAATAATTACTGATCTTTGACAGAAATGGCGCTTCGAGATGTTCTTGTTCCTCCCTCACTCATcattgtatttggaattttattttcatttcttcttttcttcattttcttcctcttttatctctttttataCCTTTAGACCTCAAATGCCTTTCCATATTGGAAAGCAGGTTTCTCAGGAATTTCAGGTTGATCTTTGTGGTTTTTACCTCACCACCATAATGCCTCATGTCTCAAATGAACAAGACTAGATATACCTCAGCAGGAGAAATGAAATAGCTACCTCAGAATTACCTTTGTATAATATAAGTCAGAAATTATCTCAGAATTTGCTTCATACACTAGATAAATAGTCAGATAAAGATGTTGAGTTTTATGAATGATCTCTGAAATTACCTCTTGGTAAATTTTGAAATGTTCTCAGGATAGTAGTGGAAGAAATACCtcatatgtataaatatatatagataactAATGACGGAGAACAGCTTTTAGACCATGGAATGAGGAGGATTATTTGAAGTTTATGACTTTAAAAAGAGCAAATCTCATACCGTTTGGAATATGTATTAGTTATTCTACAAAGAACATGTCTGTGGGTTTGGGGTATCTTATTTCAATTGTCAGGTCCTCTTAGTACCTGATAAATGTAAATACTGATGAATTTGAATTTTGAATTTAACTTTGTTGCATCTATATTATTTACTGAATTGAGATGAGATTGTCCCAATATCTTACTGCCATGTTACAACAGGAACAGTCTTGGGTAACAGATGTGGTCAGAaggatttttttcctttaacctcTGAAAGGAACATTCACCACTATCTGTACTTCAGTGTTTtgtgctttaaaatatttcctACAGATACTATATTCcccattttctctttttactgtatttatcagATAACTACGCAGCTAAAAAACCAAAGACCATCTCACTGTATTTTCTACTGTGCTCTCTGGTGTTCTCAATTTATTTACACATGGAGCTTGACAAAGTGGAATTAAACTCTGAGTTAATGCAAAAA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100940 lncRNA downstream 178126 19325392 ~ 19418804 (-) True G74928
TU100916 lncRNA downstream 241879 19354093 ~ 19355051 (-) True G74911
TU100913 lncRNA downstream 246919 19344945 ~ 19350011 (-) True G74909
TU100915 lncRNA downstream 254994 19279652 ~ 19341936 (-) True G74910
TU100920 lncRNA downstream 306643 19287340 ~ 19290287 (-) True G74915
TU101154 lncRNA upstream 18273 19640821 ~ 19688118 (-) True G75069
TU101183 lncRNA upstream 123016 19745564 ~ 19746445 (-) True G75081
TU101206 lncRNA upstream 176837 19799385 ~ 19799625 (-) True G75092
TU101207 lncRNA upstream 182218 19804766 ~ 19804970 (-) True G75093
TU101227 lncRNA upstream 248594 19871142 ~ 19872681 (-) True G75106
XM_007246593.3 mRNA downstream 24394 19569330 ~ 19572536 (-) True etfbkmt
XM_022672264.1 mRNA downstream 71181 19505050 ~ 19525749 (-) True washc4
XM_015605116.2 mRNA downstream 108294 19487123 ~ 19488636 (-) True lrrc10
XM_007246586.3 mRNA downstream 108296 19487123 ~ 19488634 (-) False lrrc10
XM_007246576.3 mRNA downstream 111783 19475550 ~ 19485147 (-) True fnbp4
XM_007246599.3 mRNA upstream 2139 19624687 ~ 19632439 (-) True LOC103046663
XM_022672279.1 mRNA upstream 12577 19635125 ~ 19637652 (-) True LOC103046970
XM_022672277.1 mRNA upstream 20777 19643325 ~ 19660262 (-) False LOC103047267
XM_007246601.3 mRNA upstream 20777 19643325 ~ 19660262 (-) True LOC103047267
XM_022672278.1 mRNA upstream 23085 19645633 ~ 19660262 (-) False LOC103047267
TU100809 other downstream 524042 19070938 ~ 19072888 (-) True G74838
TU100745 other downstream 656466 18939174 ~ 18940464 (-) True G74791
TU100498 other downstream 1567183 17982747 ~ 18029747 (-) True G74591
TU100463 other downstream 1713144 17877026 ~ 17883786 (-) False nrg4
XR_002650248.1 other downstream 3818507 15761764 ~ 15778423 (-) False LOC103046265
TU101215 other upstream 237146 19859694 ~ 19865982 (-) True G75100
TU101358 other upstream 404614 20027162 ~ 20032027 (-) True G75207
TU101364 other upstream 464870 20087418 ~ 20100250 (-) False hsd17b12
trnat-agu_2 other upstream 1273555 20896103 ~ 20896176 (-) True trnat-agu_2
TU101746 other upstream 1647581 21270129 ~ 21273017 (-) True LOC111193105

Expression Profile