RNA id: XM_022672277.1


Basic Information

Item Value
RNA id XM_022672277.1
length 4334
RNA type mRNA
GC content 0.43
exon number 23
gene id LOC103047267
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 19643325 ~ 19660262 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGCGGTTGAGCGCGAGCCGCTGTGGGCATGCTCCGTGCCGCTGTCTGACAGACGGCGGTCTCGTGACCCGGCAGAGCGCACTGAGCATGCTCGAGCCGCGCTGTGTTGTCAGGGAGAAAGCGGGCGGCCAGTCTgaggagagagaaataaacagcGACAGATACAGAGCCGGACACGGGGAGCCGAAACGGGCGCACGGAGCAGCTGCACAGAGCGGCCCTTCTCACCATGACCCAGCGGAAGATTAACGGCGGACCTACCGTGTCAGCGGCGCGGGTCTGAATGGTTAAAGACACTGGAAACGCGGAGAAGCGCCGTGTTTCTGTTCAGAGGTTGTTTTGGGGACGGCTTTACTGAATGGATTTGACTGAATGAGAGTAATCTTCAGCTGGCCTTaatgctccaccttgtagagtCCAAGTGAGATCTCAGAAAACAAAAGTTTGCTTTGTTACAAActtaatatttctgttttttactgGAGTAGATGGAAAGAGCGATAAAGAAACACTGGAGCTGAATCTATGAACAGCATGAGTGTCAGGGAGCAGTGCTGGAGTGAAGAGGATTCAGAGGGGGACAGTGACTGTGAGGACTTTTTCTATGGAGCACAGGGACATTATGTTGCTGACCTGTACTGCCATCCTCAATTGGACACAGACGTTGGAGCTGTGAAAGACATCTATTCTGACTGTGCTGTTTCTGTAAGGGAATATGAGACAATTGATGATGTGGATATTGACCTCCACATCAACATTGGCTTTCTGGATGAGGAAGTAGCCTCAGCATGGAAAGTCAACAGAACAGAACCTGTTGTTCTACGCCTTCGCTTTTCATTGTCCCAGTACCTGGATGGACCAGAGCCATCAGTAGACGTGTTCCAGCCATCCTGTAAAGATGGCTTTAATCTTGGATTACAACTCAAAAGAATTCTTTCCACATTCATATCTAATCAGTGGAAGCACCTCAGCAATGAGTTTCTGAGAACTCAGCAGAAGAAGAGGCACAGTTGGTTCAAGGCTGGAGGAACAATCAAGAAGTGCCCCAATGTTCCTCTGATCCAGGGCCCCGGGGAGAAGGGCAGGACTACAGGGCCAGAACCAAGAGTAAATCGCCTGATGAACCGCTCAGTCTCCTGCACCATGAAGGTGCCCAAAGGAGAGTTACTCACATATGCACCAAATGGACAGAGTGTGGCAGTCCCTGGCTCCAGGTCCACAGTGCAGATCACCACCAAACAGCTTATCGAGCTCTTTTTCTCCTCACAAGCTCTACTTCACTGCAAAAGTATACCTACTCTAGAATATGGCTTTCTTGTACAGATCATGAAATACTCAGAACAGAGAAttcccactctgaatgagtacTGTGTGGTCTGTGATGAGCAGCACGTCTTTCAAAATGGATCCATGCTTAAGCCAGCAGTGTGCACGAGAGAGTTATGTGTGTTCTCGTTCTACACACTGGGAGTTATGTCAGGTGCTGTAGAGGATGTGGCAACAGGAGCTGAGGTGGTTGATTTACTGGTGGCGATGTGCAGAGCTGCTCTGGAGTCGTCCCGTAAAAGCATAATCTTTGATCCTTATCCGTCTGTGGTCGACCCGTTTGATTCCAAAGCTTTGGCCTTTAACCCCAAGAAAAGAAGTTATGAGCGGCTGCAGAAAGCTCTGGACAGCATCATGTCAATACGAGAAATAACTCAAGGTTCCTATGTAGAGATAAAGAAACAGATGGACAAACTGGATCCACTTGCACATCCTCTTTTACAGTGGATCATATGCAGTAATAGGTCACATATTGTCAAGTTACCGTTAAGCAGGCAACTCAAGTTCATGCACACCACCCACCAGTTCCTACTGCTCAGTAGCCCTCCTGCCAAAGAGGCTCGATTCCGCACAGCTAGGAAACTGTACGGGAGCACGTTTGCCTTTCATGGTTCCCATATAGAAAACTGGCACTCTATTCTACGAAATGGACTAGTTAACGCCTCCTACACAAAGCTGCAGCTGCATGGGGCAGCCTATGGGAAGGGCATCTACCTCAGCCCCATCTCCAGTATCTCTTTTGGATACTCAGGGATGGGGAAAGGACAGCACCACATGCCCACAAAGGAGGAGTTAGTACAGCACTATAACAGAGTCAACACCATCTCACAGAGTCGTCCAGTACAGTCAAGGTTTCTTCAGAGTCGGAATCTAAACTGTGTTGCACTCTGTGaagTAATAACTTCCAAGGACCTCCAGAAACATGGGAACATTTGGGTGTGCCCAGTGCCTGACCATGTCTGCACACGCTTCTTTTTTGTGTATGAGGATGGTCAGGTGGGAGATGCAAACATCAACACACAGGAGCCCCATATTCAGAGGGAGATTTTGCGTGTGATTGGGATGCAGGCCAGCTGAATGTGAAGCTCCTACACTGTGAGGGATACAAATCTGTGGTTATGCTGCATCTCAATGTCAGTGTGGCCAAATTACAAAGTGGTTATAACAGAGGGACCAATTctgagatgtgtttttttttactattaaagaGGGAAAAATGCTTTTGTATTCACATAAAATCAGCTTCATATGTATGTTCTTTTATATGTGTGATTTACACATGCTACCATTTCACATACAGTATGTCTTCTCTTTTTGTACAAATCAGTGGAATAGAGGCAAATGTATGTCCCTCTTACAACCACTGGAGGGCTCTGTTGCCAAGTTTAAGCACGAAGAATGCCAGTGCACAGGTCAGCTGTGTTTTACCTGCCCATGGTTCTGACCATGTATTCCTGTTTCCCAAGATGTCAGCTGATTTAGATGAAAAGGGTGCTACATAAGATGTCAGCATGAAAAGGGTGCTAAGGTTTGTATATCTGGAAAAGGCTTCTTCCATTATTTGGTTAACCCTATCTGTCTATTCTGTTGAAATGAAatgtacaaccccaaatcagaaagggttgggacagtatggaaaatacaaataattcaaAGTGTTTCTAACATTTACTTTGGCTTGtacttcattgcagatattttGAACACAGTATTAATAAGAAGATATTTCATGCCTTTTCTGGTCAACTTCTTTTTATTGGTTAATACATATCCTTTTTTTGCTATTCcaaacacattacaaaaaaaacatttcttcttATAGCACTTAAAAGACATTTTAGCACTGAGAATTTCAAGCAATGAAGTGTTTTAGGTATTATTTTGTCCTATGCTTCCTGCAAACACATCTTAATGTGTAAAAAAGTACAGGGTCCTtgttgttgcattttttttttgtgtcaaaattctCCACGTTTTCTTTTGGGCACCTGGGGCCTTACTTCCATtatcttataaaaaaaatctagattaCTGACTATGTGTCTCTAATCTTTCACATTCTGcacatttctgcattaatgcctCCACAGTGCCAATACAACCAGGCCAGACCCTGCAATTTGAAATTGTTACTGAGAGCAGTCTGGAAAGTTATTGTCATTTTTGCTCCAGGGCACTGTGTTTATTTCCTCCAAAATTAGACCTAAAATACTGATTCATTTAACCATAGTACACATTTCTACTGTGTGAGGGCTCATCTCAGATGCCTCCAAACCCAGAGATGTTGATGCCGCTTCTTAATTTGGTTAATGCAAGacttctgttttgcacagtaaagttttaagtggCATTTCTGAATATAATTCTGTATTGAAGTGCCTTCAGCTGTTGTTGAATGATAATGCATTGCATCTGAAAATGGAGTGTCGTCAACGTAagtgtataaaatgttttatttgcatattcCGTTCTGTCCCAGATTTTTCTTATTTGGGCTTGTATGTTTTCTGATCACTACATTCTAACATTCAAGACATTGTGATTCCTGGTCTTTGCACTGGGCTTTcttctttgtcattttttaactGGCCTTTTAAAGCCAGTTTCAACTAAAACAGATAAAGATTTGCAATCCAGGAAaattgatgttttggagatggtCTGATGTTCTTATGAAGATGGAGACTAGATAGCAGAGCAGCCTTTCTCTGCAGATTGCAGTAATTACTGAATGGAACCTGCTGCACACTTCTTAATGGTTCGAAAGCTGGAAATTATGCAATATCAGTAGCATCTGACACTTAACACTTAAAACCTTAATCAGCAAAGAGACAGTTTGCTGTGTTCGTGTTGTCTTGACATTCTCTCGATGGATATAAGCATACATTAGATGTTAGATTAATAATCATGTGCTTTGCCTCAAAGGTAAGGTTATGTATGTTGAAACATGCCCACATTTGTATTGAAAGATCTTtttcaataaaattaaaacagcatGATACTGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100940 lncRNA downstream 224521 19325392 ~ 19418804 (-) True G74928
TU100916 lncRNA downstream 288274 19354093 ~ 19355051 (-) True G74911
TU100913 lncRNA downstream 293314 19344945 ~ 19350011 (-) True G74909
TU100915 lncRNA downstream 301389 19279652 ~ 19341936 (-) True G74910
TU100920 lncRNA downstream 353038 19287340 ~ 19290287 (-) True G74915
TU101183 lncRNA upstream 85302 19745564 ~ 19746445 (-) True G75081
TU101206 lncRNA upstream 139123 19799385 ~ 19799625 (-) True G75092
TU101207 lncRNA upstream 144504 19804766 ~ 19804970 (-) True G75093
TU101227 lncRNA upstream 210880 19871142 ~ 19872681 (-) True G75106
TU101228 lncRNA upstream 210880 19871142 ~ 19872681 (-) False G75106
XM_022672279.1 mRNA downstream 5673 19635125 ~ 19637652 (-) True LOC103046970
XM_007246599.3 mRNA downstream 10886 19624687 ~ 19632439 (-) True LOC103046663
XM_022672275.1 mRNA downstream 20777 19596930 ~ 19622548 (-) False LOC103045635
XM_007246595.3 mRNA downstream 20777 19596930 ~ 19622548 (-) True LOC103045635
XM_007246593.3 mRNA downstream 70789 19569330 ~ 19572536 (-) True etfbkmt
XM_015605106.2 mRNA upstream 31922 19692184 ~ 19725549 (-) True LOC103030119
XM_022672283.1 mRNA upstream 69901 19730163 ~ 19749501 (-) False LOC103021510
XM_015605122.2 mRNA upstream 69901 19730163 ~ 19749501 (-) False LOC103021510
XM_022672282.1 mRNA upstream 69901 19730163 ~ 19744962 (-) False LOC103021510
XM_022672281.1 mRNA upstream 69901 19730163 ~ 19744962 (-) False LOC103021510
TU100809 other downstream 570437 19070938 ~ 19072888 (-) True G74838
TU100745 other downstream 702861 18939174 ~ 18940464 (-) True G74791
TU100498 other downstream 1613578 17982747 ~ 18029747 (-) True G74591
TU100463 other downstream 1759539 17877026 ~ 17883786 (-) False nrg4
XR_002650248.1 other downstream 3864902 15761764 ~ 15778423 (-) False LOC103046265
TU101215 other upstream 199432 19859694 ~ 19865982 (-) True G75100
TU101358 other upstream 366900 20027162 ~ 20032027 (-) True G75207
TU101364 other upstream 427156 20087418 ~ 20100250 (-) False hsd17b12
trnat-agu_2 other upstream 1235841 20896103 ~ 20896176 (-) True trnat-agu_2
TU101746 other upstream 1609867 21270129 ~ 21273017 (-) True LOC111193105

Expression Profile