RNA id: XM_007246609.3


Basic Information

Item Value
RNA id XM_007246609.3
length 2224
RNA type mRNA
GC content 0.41
exon number 9
gene id LOC103021510
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 19730163 ~ 19749501 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGGTCATTGTTCTTAATGTCGGGTTTTGTGAAGTCTCCCCTATCTGAGACTAAACTGACTGGTGACACGTTTGAGCTATACTGTGATGTAATTGGAACCCCCACCCCTGAGGTCCAGTGGTGGTATGCAGAAGTGGACAGTGTTAATGGCTTCATCCAGCTGTGGGATGGTGCACGTGGCCAGCGCGTTTCCATAAACACTGCATATGGATCCAATGGTGTTAGTGTGCTTGCTGTTGTGCGTGTCATCACGGGAGATTCTGGGATTTATGAGTGCCGAGCCAGTAACAACCCGCAACGCAATGATCTTCACCAAAATCCATCAACTGTCTGGATACGAGCCCAGGCAACAGTTACCGTTCTGCAGAagcCATTAATTAATGTGACTGATCACATCACCCTTCCCACGGATACCAATCTGCCACAAGTCACGCTGCAGTGTAACCTGACTACTGTATCGTACAATCATCGCTGGAGCTACTGGACCAAGAATGGAGAGGAAATCCCGACCACACGGACTGAGCAGAAGAACATTGAATACAAAATCAACAAGCCAAGGGCAGAGGACGCCGGGGAATACATGTGTGTTTATACGTTTGAGCTTGCGCCTTTAGCCAATGCCAGCATTGAGGTGAAATCTGCTCCAGACATCACAGGACATAAGCGCAGTGAGAATAAGAATGAGGGAGAACGTGCTGTCCTCTACTGCAAGTCCGTGGGCTACCCTCACCCTCTGTGGACCTGGCGCAAGTTAGGCGAGGGTGCCTCCTTTGACATTGACAATTCCTCTGGCCGCTTTTTTATCAGCAACAAGGATAACTACACAGAGTTGTCCATTATTAACCTGGATATTGAATCTGACCCTGGGGAGTACGAGTGCAGTGCCAACAACATGATCGGAAACTCTACCATGACCTCAGTGCTCCGTGTTCGAAGTCACCTGGCCCCCCTGTGGCCCTTGCTGGGGGTCCTAGCTGAAATCATTGTTTTGGTCCTCATCATTGTTATCTATGAGAAACGCAAGAAGCCTGATGAGGTGCCTGATGATGATGAACCAGCTGGCCCAATGAAAACTAATTCCACTAACAACCACAAAGACAAAAACCTACGTCAGAGGAACACAAACTGAGCTGTCCGAGAGTACAatgATGACATTCATATCATGACCATATGAACGTAACATGGAGTTTTTTATTTAGGAAAAAGTATCTGGACTAAGAGAGAAGATCTGTGAGAAGAAGTGCATACGACCACTCGAGGCATGCCTTATAAGTTTGACGTGAAGAGGATGTCCGACAAGAATGAATCATGACTATAAATGCCGtgaatattacaaatattttattgcatgattgtgttgctttttatttatttttcattcataATGATCTTTTGTTTTCATGTCAACAAATAGTGCATGCAAGATATTAATCTGCTATTTGATACAGATATGAGatttggtttgtgtgttttagagtgACTTCATGTAGATAACATTTATATTTCAAGCAAATGTTCTTTACACTTTGCAGCGTGTGCAAATCTACCACTATGTTTTTGGTATGACAGTTTTTGTACAGTTTATCATTTCACTGCATACCCTTTGGTAAGGTGGCTTatggttttctttttattgttattattattattattattattattattattgatttatgtTCTAGGCTTCAATGACAGATAAGGGCTTTTCAGTGTCCTTTGTTTAATTTGTacatatattgtacatttatttatttctgtatgtaTCATGTATCTGGAGATATCCATAGTTATCTGAATGTTCTTCATTCTGATGCACTTAAGTGTACAGATGTAATTGCAAATCAGTAATGCCATTTTCTTCTGAATTCTAAACCTTATCTATCTATGACTCAGCTTTCTATGTATGCATTCTATACAGCATGGCTTATATCCTATGCAATATTtgttcatatataaatataaatatatagtagataaacattttttacaattgGCTTTTGGTTGcgtatttaaagatttaatatTATAGGTTTGCCATTAATAGCGAAATGCACTGTTCAAACCATCAACCAATGACGCCTGACCATGTCCTGACACTCATTGCTCTACTACTCCATCTGCATGAGCTCCCTGCCTGTGCAGAGGTATAACTGTGCAGAAAAAATATCAAAGTGGGTCATACAGCACATCCATAtcatttttaagaaataaaaaatccaaAGTGA

Function

GO: NA

KEGG:

id description
K22653 NPTN; neuroplastin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101154 lncRNA downstream 42045 19640821 ~ 19688118 (-) True G75069
TU100940 lncRNA downstream 311359 19325392 ~ 19418804 (-) True G74928
TU100916 lncRNA downstream 375112 19354093 ~ 19355051 (-) True G74911
TU100913 lncRNA downstream 380152 19344945 ~ 19350011 (-) True G74909
TU100920 lncRNA downstream 439876 19287340 ~ 19290287 (-) True G74915
TU101183 lncRNA upstream 602 19745564 ~ 19746445 (-) True G75081
TU101206 lncRNA upstream 54423 19799385 ~ 19799625 (-) True G75092
TU101207 lncRNA upstream 59804 19804766 ~ 19804970 (-) True G75093
TU101227 lncRNA upstream 126180 19871142 ~ 19872681 (-) True G75106
TU101228 lncRNA upstream 126180 19871142 ~ 19872681 (-) False G75106
XM_015605106.2 mRNA downstream 4614 19692184 ~ 19725549 (-) True LOC103030119
XM_022672277.1 mRNA downstream 69901 19643325 ~ 19660262 (-) False LOC103047267
XM_007246601.3 mRNA downstream 69901 19643325 ~ 19660262 (-) True LOC103047267
XM_022672278.1 mRNA downstream 69901 19645633 ~ 19660262 (-) False LOC103047267
XM_022672279.1 mRNA downstream 92511 19635125 ~ 19637652 (-) True LOC103046970
XM_022672288.1 mRNA upstream 17833 19762795 ~ 19772325 (-) False LOC103030439
XM_022672286.1 mRNA upstream 17833 19762795 ~ 19772325 (-) False LOC103030439
XM_022672287.1 mRNA upstream 17833 19762795 ~ 19772325 (-) False LOC103030439
XM_022672285.1 mRNA upstream 17833 19762795 ~ 19772325 (-) True LOC103030439
XM_007246616.3 mRNA upstream 194673 19939635 ~ 19972658 (-) True LOC103024527
TU100809 other downstream 657275 19070938 ~ 19072888 (-) True G74838
TU100745 other downstream 789699 18939174 ~ 18940464 (-) True G74791
TU100498 other downstream 1700416 17982747 ~ 18029747 (-) True G74591
TU100463 other downstream 1846377 17877026 ~ 17883786 (-) False nrg4
XR_002650248.1 other downstream 3951740 15761764 ~ 15778423 (-) False LOC103046265
TU101215 other upstream 114732 19859694 ~ 19865982 (-) True G75100
TU101358 other upstream 282200 20027162 ~ 20032027 (-) True G75207
TU101364 other upstream 342456 20087418 ~ 20100250 (-) False hsd17b12
trnat-agu_2 other upstream 1151141 20896103 ~ 20896176 (-) True trnat-agu_2
TU101746 other upstream 1525167 21270129 ~ 21273017 (-) True LOC111193105

Expression Profile