RNA id: XM_007246627.2


Basic Information

Item Value
RNA id XM_007246627.2
length 1362
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC103027908
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 18975308 ~ 18977165 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atgtGCCATTTCAGTCAGTCATGTGGAGGGTCTTCTATTTACCTGTCCATCTTAATCATCTGTCTGAGCTGCTACTTCAACAATGCCTCATCACAGCCCCCTACAGCTGCTCCTCTCATTAAGGACACACCTTTTGCAATCATATGGAATGCACCCGTCGATGTGTGCAAGAACCTCAAGATCGGTTTGGACCTTTCTGCATTCCAAGCTGTCACCACACCAGCCAGTGTGCCTAACCAATTTCTCTTCCTTTTCTATACTGATAGACTTGGGCTGTACCCATATGTAGATCCTGCTACCAAGCAAGAGTACAATGGTGGTATTCCCCAAAAGGCACCCCTGAAAGCTAGCCTTAAGAAAGCCACAAGTGATATCGCTAAGTACATTCCTAACTCCACCCCTGGCTTAGCTGTAATCGACTGGGAATCATGGCGTCCACTGTGGGTCAGAAACTGGGATGCtaaacaaatatacagaaaGTTGTCCATTGATTCTGTTTTAGCACAAAATTCATCTCTGTCCACATCTATGGCCACCAATATTGCAAAGGAGCGGTTTCAGACAGCAGCCAGAGATTACATGGAAGATACCATTCAGCTGGGGATCGAACAACGTCCAGAGCAACTTTGGGGTTTTTACCTGTATCCAGAATGTTACAATTTCAACTGGAACTTTCCAGATTACACTGGAAACTGCCCACCGACTGAGGAAGCCCGTAACAATGAGCTTCTTTGGCTGTGGGAGTCCAGTACAGCTTTGTTCCCCTCCGCATACTTGCCACTTACTCTGAAAGATGACCCCAAAGCAGCACTCTTCGTCAGGGGTGTGGTAAAGGAAGCAGTGAGGGTTTCTGCCCTTCCAAAGAAAAACTACACTTCCCCAATTTACACCTATTTCCAGCCTCTTTTCCGTGATCAGAACCGAGTGTACCTGGGCCAGGAAGATCTAGTCAGGACTATCGGGGAAAGTGCAGCTTTAGGTGCATCAGGAGCAGTGCTCTGGGGTGCAAGTACAAGTTTCAACAGCAAGGAATCATGTGAAGCACTGTCTGCTTACCTGCTGACCACACTGAACCCTCACATAGCCAATGTGACCGCAGCTGCTAAACTCTGCAGCACTACTCTGTGCCAGAGTAACGGACGCTGTATCCGGAAGAACCCAAACTCAGACGACTACCTCTACCTCAACTCAGAGAATTTCAGCATTCAGAAGAGGAGAGGGAAATACGTAGCAGTTGGCACGCCTACTGTCACCGATCTCCTAAACTTTGCAGACAAATTTACCTGTCAGTGCTACACAGACCTGACATGCTCTGCTAAACTGGCCATTTCAGTTAGGAGCAGAATGGTTATTGAAGTGTGA

Function

GO: NA

KEGG:

id description
K01197 hya; hyaluronoglucosaminidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100756 lncRNA downstream 7398 18960804 ~ 18967910 (-) True G74796
TU100748 lncRNA downstream 25192 18948629 ~ 18950116 (-) True G74792
TU100688 lncRNA downstream 325537 18649439 ~ 18649771 (-) True G74740
TU100683 lncRNA downstream 335123 18637263 ~ 18640185 (-) True G74735
TU100664 lncRNA downstream 345903 18629061 ~ 18629405 (-) True G74716
TU100767 lncRNA upstream 7030 18984195 ~ 18986193 (-) True G74804
TU100779 lncRNA upstream 15658 18992823 ~ 18994884 (-) False LOC103034453
TU100915 lncRNA upstream 302487 19279652 ~ 19341936 (-) True G74910
TU100920 lncRNA upstream 310175 19287340 ~ 19290287 (-) True G74915
TU100940 lncRNA upstream 348227 19325392 ~ 19418804 (-) True G74928
XM_022671893.1 mRNA downstream 1995 18970412 ~ 18973313 (-) False LOC103034129
XM_007246550.2 mRNA downstream 2164 18970412 ~ 18973144 (-) True LOC103034129
XM_007246544.3 mRNA downstream 350113 18619136 ~ 18625195 (-) True dld
XM_007246536.3 mRNA downstream 507195 18461375 ~ 18468113 (-) True parp16
XM_022672236.1 mRNA downstream 526753 18430338 ~ 18448555 (-) False LOC103028541
XM_022672242.1 mRNA upstream 1683 18978848 ~ 18987058 (-) False LOC103028224
XM_022672244.1 mRNA upstream 1683 18978848 ~ 18986645 (-) True LOC103028224
XM_007246551.3 mRNA upstream 15503 18992668 ~ 19008366 (-) True LOC103034453
XM_022672245.1 mRNA upstream 46525 19023690 ~ 19046218 (-) True LOC103035727
XM_007246555.3 mRNA upstream 46525 19023690 ~ 19042135 (-) False LOC103035727
TU100745 other downstream 34844 18939174 ~ 18940464 (-) True G74791
TU100498 other downstream 945561 17982747 ~ 18029747 (-) True G74591
TU100463 other downstream 1091522 17877026 ~ 17883786 (-) False nrg4
XR_002650248.1 other downstream 3196885 15761764 ~ 15778423 (-) False LOC103046265
TU99163 other downstream 4429870 14542209 ~ 14545438 (-) False LOC103025073
TU100809 other upstream 93773 19070938 ~ 19072888 (-) True G74838
TU101215 other upstream 882529 19859694 ~ 19865982 (-) True G75100
TU101358 other upstream 1049997 20027162 ~ 20032027 (-) True G75207
TU101364 other upstream 1110253 20087418 ~ 20100250 (-) False hsd17b12
trnat-agu_2 other upstream 1918938 20896103 ~ 20896176 (-) True trnat-agu_2

Expression Profile