RNA id: XM_007246635.2


Basic Information

Item Value
RNA id XM_007246635.2
length 3466
RNA type mRNA
GC content 0.41
exon number 18
gene id LOC103030754
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 19772487 ~ 19786105 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAACTAGCTATAGTATTAACATGTTCAGCTTGATTATGCTGAAATACTGTATTCATGTTGTGAGATGAGGGCTTATGAATGCCTCCACAAACTCGTATTTATACAATTTTTAGAGGGGGCGTGTAAATAAAAacgtgatttttttatatagttttaaatggttttaactATGTTAGTTACTTGGAAAGTTGGCTGTTGGCCCTAAATCCAAATGTCAGCGATGGGGCCATACTGGGTTGTTTGTACAGTGCACACGGGGCCTAAATAGGACCCATGTGAAATTAAGATGGGCTGTAACGATGTGGCCCGTTTTTAAATGCCCAAATGAGAAAGATGAATCTGAGTAGGAACATATGTACAAACCCAATTAGAGCCCAAGCCCACATTCCACCCATATGAATCAACCCACATCTACAAGCCACACCCTGTAATACCAGGTCTGTATGTAGCTAACTGTCAGGTATTTTAGGCAGTTTAGTATCGAAAAgttgtgtgaagtgtgtgtttgaAGGGAATTTACTTTCTCTTGCTGTTTCCTGGTTTATGCAACAGATACAGAAAAATGGACTAATTAAACTAGTTTCTCCCCATCTCTTATCATTTCCTCCACATTTGATTATTAAATAAACCTGTCCTGCTGTTTTAAGACGCACACAAGGAAGCACACTAGAGGGCACTGCTATCTTGAGTTTGAGATTAGGAAGAATTTTCTTAATTTGTGGTGAAGATATGTCCCCAGGTAGCAAAATGATTTAGTGTGACAGTTTTCCCAGAGAGTGCTGTCTTCCTCATTAGTTGTCTACTCAGCTGAGCAGCAGACAGCAGTGCTCTGTTCTAGGCTGCACATGAAGAGACTGGAATGAAGATGAAATTAGCTCTGTTCTTGCTGCTCATTGTCCTGCAGATTGAGCCCCTAAACAGCACAATCAGGCAGATCCAGCAGTGTGGAGTTCATTGCTCTAAGGGGCTGAACTGTAATGTCAAACCTTACTTGTCATTATCACGCTGCAAGAAACAGCATGACTggaccaacagcagcagcatccaTAATGTCAGCCTGTCCACTGTTGTGAGATGTGAAAAAGGAAAGTGTTCAGTCAACCTCAACATGGTCGTAAAGATGACACTTTATGATGATATCCGTGGTGTATTCATGTGTGTGCACTCTCCTGGGATGTTGGAACGCTGCCAAATTGCGAACTTTCCACACAACACTAGACAACACGCCACTGGAAAAGAGGTAGAGGTCCAGTATGACTGTTTTTCTTTCCGGCCTGGACAAGATCTGCTTGTGACACTGAACACAGTCCCCAGCTTCTGCAATAATACTTGgacacaaacatatacaattCCAGAATGTGCTGATGAAGACCTCAGGAGAACAATTTCAGAGTGCAAGACTGGAGAGCTGGCGTACACAGTAAACACTAACAGGACAGAAATTACTGTCAGGGTGCGAGAAGCTCCTGAGGATGCAGACTACAACCTTAGACTCTGCCTTAAAGGACGTATTTGCATCGGAGTAGGATCACACCACCTGATCAAAAAACAAGACTTGCACAGAAACCAGTCATTTCTATACTCCAAGGCCCTTCCTTGTTTGTGCATTGAGGGATGGCCTGCCACAACGAACGCACGCAGAACTCAAGTGTGTCCATTTAAAAGTAACATTGAGGAGTTGTGGTCAGGGGTGACCTATGACCATCAGACACAGGCTCTGTCATGGAAGCCTGCGTGTCCTGTCAAGGCAGTCTCCTCGTTGTGTCAAGCTGTTGTTCCGAAGACGTGCCTTGACTTTGGAAACATGTCACTGTCCTCTGAAAAGCATAATGTGGTGTTTTCTACAGTGGATCCACACCCACAGCTTTGCATGAAGTTCACCACTGAGGCCGGGTTTTGGATAAAGTGTCCTTTCAGTTCTGAACGTTTTCCAGGATGGAATCTGAAGGTGGCTTCCAATGCTGATGGGCACGTGGTGGAGATAGTGTCGTGGTTTCCAGCCAGGTTTGCAGTGGGTCTGTGCAAGATGTCCAGCTCTGTTACTTGTGAACTGCTTGAGGAAAGCTCGTTTTTAAATATCTCTGTGGACAGAACAAAGCCTTCAGTTGTCAACCTGTCAGCGCAGAGGTGTGACCCGAGCGTTTGCGTTCAGGTGAAGAGGATAGATGTGCAGTTCGCTGTGCAGGAACACCGATGCAACCTCCAGTGCTCTGAACAGCAGTTTGATCAGTGGAGTTACAGTGAAGCTCTGAGGAAGTATGCACTGCCACTTGTTGTATGCATTATAACACTGGTGATGGCTGTTTTGGTTGGGAATGTGACTTTGAAAGCTTGTGGTTGGGGACAACGAAAGCAGAAACCGGACAAAAGCCCCTCATGTAGGTCAGCAGCAGAAACAGAGACCCTGATCCACACGGCCAGTGAAGACATGGATACAGAGCTACGTCTGGCTTAGGTCTGTGGGTGGCCATTGTTCAGCTGCAACAGGAGCCTGCAAGTGGAGCCAccaaaaaaactataattttagCTCCTTAATCAGCTTGGCCTGGATTTTGCTCCACACTTACACATTTATGCTTTAagtattgtcactgtccaaaaaaaaaaagtttatttccatttttgtcagtttttcacatttttgtattttggtgtAATGTGAACCTGGCAGTTACATTTTAGATTGTGTCACATTTTCATAATGAATCGACCTCTAGAAACCGTGATTTAGAATACagtctttttacattaacttcatTTGAAGGTAAgcataggcctgtcatgatgaCTATTGTGATAATTGTGTTAAAcgatattattgttattttaaaacctttttatgccactgatttaataacatttaaattataatgCAATTACAGCTTGTTAAAGAAGGTGATAAATTGGGAGTTTGGGTGAttaagtcttgttttttttaatctatctcAGTTTTTCCTCTATGTGTATAAAGCTACTGTTATCCATGCATTATTGCACACCtggctaaaatattggaaaaactGAGATAGCAtccgtttgtaaacaaacacaaaacgaAATACAATGAATGATatcatcagcaaaaaaaaaaaaatcctatacaTATACTGAACGAAAAGTCAAAATCATAATTATGATGACACAATTCCCATTTTAGACAAACATTATTTTTGCCTGACAGTGACGTATGCTTAAACCCATGATAAgtagtattttattgtatctattaaaagtaataataatattaattaacaatCTAATTTCTGTATATTTACCCTTAGGCATGTAGATTAAActgcctttctctttctcttaaatACACATTGAAGATACATTGAAGATTGTCTGCTTAGAAGCGCAGATTAGAGGTGTAAGATGTTAAGATGAGAAGTATCTGTCTGTAGGTTAATATTTGTCATTATTGAATGTGTACATTAAAAAGATCATTGTTTCTAAGCTGAACATA

Function

GO: NA

KEGG:

id description
ko03022 Basal transcription factors
ko03030 DNA replication
ko03420 Nucleotide excision repair

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101106 lncRNA upstream 6722 19761774 ~ 19765765 (+) True G75026
TU101087 lncRNA upstream 39449 19732016 ~ 19733038 (+) True G75017
TU101058 lncRNA upstream 123103 19624659 ~ 19649384 (+) True G74995
TU101064 lncRNA upstream 152242 19599787 ~ 19620245 (+) True G74996
TU101054 lncRNA upstream 177246 19593565 ~ 19595241 (+) True G74992
TU101113 lncRNA downstream 13280 19799385 ~ 19799649 (+) True G75033
TU101114 lncRNA downstream 18661 19804766 ~ 19804976 (+) True G75034
TU101257 lncRNA downstream 274265 20060370 ~ 20122740 (+) True G75131
XR_002650258.1 lncRNA downstream 498572 20284677 ~ 20287412 (+) False LOC111193104
TU101308 lncRNA downstream 499059 20285164 ~ 20288047 (+) True LOC111193104
XM_007246603.3 mRNA upstream 84377 19660273 ~ 19688110 (+) True LOC103047790
XM_022672273.1 mRNA upstream 182044 19574314 ~ 19590443 (+) False LOC103045341
XM_022671921.1 mRNA downstream 57197 19843302 ~ 19844222 (+) True LOC111193059
XM_007246615.3 mRNA downstream 68493 19854598 ~ 19858835 (+) True LOC103024220
XM_007246614.3 mRNA downstream 73328 19859433 ~ 19872712 (+) True LOC103023471
XM_007246612.3 mRNA downstream 73329 19859434 ~ 19871578 (+) False LOC103023471
XM_007244243.3 mRNA downstream 228130 20014235 ~ 20024227 (+) False prr5l
TU101007 other upstream 239414 19527991 ~ 19533073 (+) False LOC103044129
TU100801 other upstream 686931 19082816 ~ 19085556 (+) True G74832
TU100573 other upstream 1317290 18454851 ~ 18455197 (+) True G74649
TU99974 other upstream 3484158 16286676 ~ 16288329 (+) True G74169
XR_002650242.1 other upstream 4851484 14891534 ~ 14921003 (+) False rpgrip1l
TU101298 other downstream 417514 20203619 ~ 20207922 (+) True LOC103028745
TU101630 other downstream 1237151 21023256 ~ 21025128 (+) True G75383
TU101641 other downstream 1302517 21088622 ~ 21096906 (+) True G75391
XR_002650259.1 other downstream 1464362 21250467 ~ 21264776 (+) True mov10l1
TU102047 other downstream 2969047 22755152 ~ 22772561 (+) False LOC103028957

Expression Profile