RNA id: XM_007253573.2


Basic Information

Item Value
RNA id XM_007253573.2
length 4941
RNA type mRNA
GC content 0.40
exon number 1
gene id LOC103022894
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 7260981 ~ 7265921 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aagttaaaaaaaatataaaaatatatttttaataaattaaaacaacaaaaatagtgTCAAATTAATCCATTACTTCCCTTCACCATAGAATTGTTGAATCTGTCACTACAGAATTATGTTAATAGCTTGTGGAAATTTATGAATTGACTTACACACTGTTCCAGTACCATCATAGGGGTTAAAAGGTCAGATAGAATagaataagaaataaatgtcAAATTTCACCAAACAACAAGATGAAATGAATAGTATGTTCAATGAAAAAGCTCAGAAAAGGCAATTTATTCATAGGTAAATAATATGTGCCCTAACTAAAGGTATTTTGTATATGTACTACtgagaaaagaaaattaaattaactacAGACAAATAATAGTGTCAAAAtacttctttgtttttttttatttttgaattaaTACGCACTACATGATTGGCAGGAGGCACATGTTGGAAATAAGCTGGTGGcaaataattgattaattagaaaaaatattaactTTAATACTGTTCCAATACCATGTTAGGGCTTGTAAGGTACAGACAGTAAACACTTAtacttataaatgtaaaatcagCCAAACATGTAAGAGAAATCTTATACTAATATTATAGTTTAACTGTACaacattatatttattctattctactactgaaatgtatttatatatatatagtttataataaTGAAGATTCAGACCTATGTCACCCCTGTTATTCTTCACTAttcatctacaagaaaccctgCTCTAAACTAAAGcttaatatataatactaaCACAGAAAACATCCAGCTGGACTGAAGCCTCGCCGCATCTCCAACCAGCAATGTCTGAAAGAACTATGTAAGATCTTGGCGATGCAAACGCAAAACCGAACAGACTGAACCATCAAACGCTCAGATGGAGCAGACCCCCCATGGCAGGGGGCTCAACATGTCGTCAGATCTGCTCGCTCTCTTCCAGTGGACCCCTGCCTCTTGATACGCTCTGATTTTCTGGAAGAGGAATAACCAGCAGTGATGGATTTGAACCTAACGGTGATTGACAGCGGCTTGTTGGAGAGCGACCAATCGACCAGAGTTCTCACTGGCTGCTTTCTGTCACTCCTCATTCTGTCCACCCTGCTGGGGAACACGCTGGTGTGTGCGGCCGTCACCAAATTTCGCCACCTCCGCTCCAAAGTCACCAACTTCTTTGTCATCTCGTTGGCCGTGTCAGATCTGCTGGTGGCCATCCTGGTCATGCCTTGGAAGGCTGTGACGGAAATCGCTGGCTTCTGGCCCTTTGGATCGTTTTGCGACATCTGGGTGGCTTTTGATATCATGTGCTCCACTGCGTCCATCCTCAACCTCTGTGTTATCAGCGTGGACCGCTACTGGGCCATTTCCAGCCCTTTCCGCTATGAGAGGAAGATGACTCCCAAGGTGGCGTTTGTGATGATCAGCGTGGCTTGGACGCTTTCCGTGCTCATCTCCTTCATACCGGTGCAGCTGAACTGGCACAAGGCTCAGCCGACGAGCTTGGCGTTGTCCAATGGCTCTGGCGGGGTGCCCCTCATGGACAACTGCGATTCCAGCCTCAACAGGACCTATGCCATCTCCTCCTCACTGGTCAGCTTCTACATCCCAGTGGCCATCATGATCGTGACCTACACTCAGATCTACAGGATCGCCCAGAAGCAGATTAGAAGGATCTCTGCGCTGGAAAGAGCAGCGGAGAGCGCCAAGATACGTCACAACAGCATGGGCAGCAACTCCAACATGGACTCGGAGAGCTCCTTCAAGCTGTCCTTCAAAAGAGAGACCAAGGTGTTGAAGACCTTGTCGGTCATAATGGGGGTGTTTGTGTGCTGCTGGCTGCCCTTCTTCATCCTCAACTGCATGGTACCGTTCTGCGAGCATAACCTACCATGCATCAGCCCCACCACCTTTGACATCTTCGTCTGGTTCGGCTGGGCGAACTCTTCCCTCAACCCAATCATCTACGCCTTCAACGCGGACTTCCGCAGGGCCTTCGCCATCCTCCTGGGCTGCCCCAGACTTTGCCCGGGTAACAACATCATAGAGACCCCGAGTCTGAACAAAAACTGAAGCCCTCCACTACTGTCAGATAGATGAGAGGAGTGTGAGACTAGCCTGCTCTAAAAATGTAGAGTAGCCCATGTCACAACCCTCAGTGCCAGAACAAGCATCTGGTCAAGAGGGGGGGAAGGGATTTGGGATTAGAACTCTGGAAGAAAGCCCTCCTGTCGTGCCAGGGAGCAGACAGAGTGGTTGCGATGTTTCTTTTGAGGGAGATAATCTTTATGACAGGCCATGCTATCCTCCAGGACTGATGCCTGGACGGCCTCTGGATCCGGCCCCCTGTGGCTATATCAAGCGTGAGCAGTTCTGTAGTACAATACATGTAATTGTACCAACAAGTGACTTTTGGGAATTTTTTTGGGCCTCTCCACTTTTCCCAGTCATAAATGTGTTTCACATACGGACCTTAACTATAAGAATGATCATGAAATAAACagaatgttctattttttttttttttgtacgaGAGGGAGCTtcacacaccaaaaaaaaagtgacagaaACATCTGTAAATTGAACAAAGTCtacatatgtatgtgtgtgtgaagcggAATCGAAACTTCGTGACTTCTGCTGGGCAAGAATGCAATACAATGGGACACGCTGTCTGTAGAGCTACCTGCATCATCTTCCTGCGACTCATTTCCAGTTTTTAACCCAAGGTTTAAGGCTTACGAGCCAGACACTATGATATAAAACGGATAATGTATAGTTTTAATTTATGGAAATAGAATTGAGAAATGTATAGTACGTTTATTTAGCACtgattaatataaattatagcCTCCAGTGAAGTTCTGTGTATAATCAGGCTCTGGCAAATAGTAGAATCCAAGAATCTATTTCATCTGTTTCACTTCTGTTACAGATCCCACAGGCCTTACTTTATTCATGTGGTGTTGCATTATGTTCAGGGCTGTTCCAAAACAAGGGGGCAGATGGTCAATTATGAGATGGCCGTTCCGTGATTGTCATAATGAATATGTGTCCTGTTCATTGGTGCCTGAGCTTCTCAAAACTTGCTTTTCTATTACTAAACACTGACAGCTAAATACCAAGACAAATGGAACAGATGGCCGTTAAATATGAACGCAGAGGTGGGAATCAACAGTGATGTATGAGTCCTGGTGAATGTGCAATAGGATCCAGTATTGTTATGACCTGTATACCTGTGTACAGAACACTACAGTACTAACACTACCTGGTTGATAATGCTGTTCACAGTGTGCGACTGTGACCTTCATCTCAATAGGATTTTTGTTGCTACATAAGTTGATGTCAGTAAATGTGCAATACTAAAAATGTTGCTGGTGTAAAATGGTGAAGTGGTGAAAACAAGTGCTTTGTGAAGGGGAACATTTGCATTGGTCAAAGCAGGGGTGGCCAATCCTGGAGTCGTGGATATCTACCACCATCAGATATAACCTGGGTCAAGTGTATTAGATTACaacctcagaaaaaaaaagggttgGGTTGTAGATGGTTCTGCAAATGACTTATTTTAGCTACTTAATTGAGGTTTTATTGTACTTTATAGAGAATAACttttaaccagacaaaaaaaacttgtaatcAATTTAACCAATCAAATGTGAACATGTGAAATAAGTTCACATGTTATTCTAAtctatacattaaaaaactttaaaatatatcaatatttttaatgatgtAGGATTGGAGATAAATATACAAAGTGGTAGATTAACATGAACCAGATTGGTCACctttggattaaaataaattaagaaatagtaaccagttttttaaatgttttaaacacactatatgatcaaatgtattgggacacctactgATTACAACAACAGGAgttttattatgatattatttcaTTCTAAATTACCCATAATCATTAGAATTAAAAGCAGATTGATCAGCATTGATCGgacatttttctgcactatgcTTCTTAATCCAATTGGGTTTCAGTAATCACACATTTATTAATACACTTAGAGCCCATGCTGTTCTGGAACCCAAATAGCCTGTGTCCTGTGAGCCTcacatgagcatgttggctggaatatgtttaattttaaacatttgagtCAATTGGTCTCAATGAAACACCTAAATTCAATTAATGAGGAtttaaggagattttattgcctttcgcatcacatgtggtacatgaggtggaatgaaattgtgatctcacgatccagtttacacccaagagctgatgttaaaatagataatatagataaaataagataacaaaataaaagaatacaataaaaatagaatagaacaaaatagataaagataagtacacaaaaacattaaaatagtaGGCAGAGTAgacaggtagcagcaacatgacaTCCagttttgctatagcagcatgataatggaATTAAGAGCAGTacaagataaagtgtctcataAGAGGtgtggtgtcccaatacttttgtccatatagtgtatagtttttggctttatttgcaacaaataaaacaaatacagtaaaattggTATTctactagaatatatatttattttattttctttcatttggatatttttttaaatgagcatAAAAGCATATTCTACACATCTAAATATAATCTAGATCTATAATAGATATACAttcaggatgtttttttttcaccttttccAGAGTGTTGTTTACTTTCGCAGTGTAAAGGTCAAGAGTCTGAACACTATCTCCGCCATGTGTCCAGCATGTAAAGTTGTTTACATAATGGAAATCAATTGGGTCAAGTAGTCTGACTTCCTCCATTAGGCTTCGGCGTGATCAAGTCTGAGTCCCGTCATGAACTTTATGTCCATCCATAAAGTACACATGGAGCAAGTGCTGTTAGTgaatgtttaaa

Function

GO:

id name namespace
GO:0007212 dopamine receptor signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0042311 vasodilation biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0004952 dopamine neurotransmitter receptor activity molecular_function

KEGG:

id description
K04144 DRD1; dopamine receptor D1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96949 lncRNA downstream 79529 7165132 ~ 7181452 (-) True G71845
TU96942 lncRNA downstream 85019 7130751 ~ 7175962 (-) False G71839
TU96941 lncRNA downstream 88070 7130751 ~ 7172911 (-) True G71839
TU96916 lncRNA downstream 207662 7052898 ~ 7053319 (-) True G71825
TU96913 lncRNA downstream 277978 6982803 ~ 6983003 (-) True G71822
XR_002650220.1 lncRNA upstream 35905 7301826 ~ 7302308 (-) True LOC111193041
TU97033 lncRNA upstream 77313 7343234 ~ 7343434 (-) True G71900
TU97044 lncRNA upstream 231860 7497781 ~ 7498483 (-) True G71911
TU97047 lncRNA upstream 255611 7521532 ~ 7521741 (-) True G71914
TU97104 lncRNA upstream 285264 7551185 ~ 7554641 (-) True LOC103027657
XM_007253579.3 mRNA downstream 254047 6985218 ~ 7006934 (-) True LOC103024994
XM_007253580.3 mRNA downstream 304788 6949576 ~ 6956193 (-) True LOC103025318
XM_007253582.3 mRNA downstream 392719 6864024 ~ 6868262 (-) True LOC103025929
XM_007253585.3 mRNA downstream 667857 6585674 ~ 6593124 (-) True LOC103026932
XM_007253587.2 mRNA downstream 677239 6570816 ~ 6583742 (-) True LOC103027842
XM_007258580.3 mRNA upstream 158762 7424683 ~ 7444873 (-) False kif3a
XM_022672035.1 mRNA upstream 158762 7424683 ~ 7444873 (-) True kif3a
XM_007258582.3 mRNA upstream 158762 7424683 ~ 7444871 (-) False kif3a
XM_022672036.1 mRNA upstream 158762 7424683 ~ 7444871 (-) False kif3a
XM_007258583.3 mRNA upstream 158762 7424683 ~ 7444869 (-) False kif3a
TU96917 other downstream 203338 7057110 ~ 7057643 (-) True G71826
TU96859 other downstream 436225 6777239 ~ 6824756 (-) True G71771
TU96529 other downstream 1419294 5829621 ~ 5841687 (-) True LOC103035656
TU96400 other downstream 1784606 5471666 ~ 5476375 (-) True G71458
trnaw-cca_42 other downstream 2336910 4924000 ~ 4924071 (-) True trnaw-cca_42
TU96981 other upstream 43854 7309775 ~ 7312926 (-) True G71862
TU97555 other upstream 1373617 8639538 ~ 8645601 (-) True G72336
TU97699 other upstream 1899957 9165878 ~ 9174309 (-) True G72449
TU97707 other upstream 1956771 9222692 ~ 9225559 (-) True G72453
TU98300 other upstream 4254966 11520887 ~ 11545223 (-) False LOC111193052

Expression Profile