RNA id: XM_007253574.3


Basic Information

Item Value
RNA id XM_007253574.3
length 1934
RNA type mRNA
GC content 0.49
exon number 2
gene id LOC103023202
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 7206477 ~ 7212496 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGGAGTTGATGGTGGAGTGGAGTGTGAGAGTTGCTGAATAGTGCTGAACTGGGAGCTGAGCTGTATTGGGGAGCTGAGCTGTGGGAGCGCTGGTTTATCAGTGCTGGTGGAGCAGCGCGGTTCATGCTTCAGTCAGAGCGGGCTGTGCTGAGGAAGCTGCCCAGGGATGGCCGCGGAGCTCCGGGGAGAAGAGCGGGAGGAGCGCGGGGCTCCAGCCTCTCCGCAGCGCCTCGTCTCCAGCCTGCCCTTCAGCGTGGAGGCGCTGATGAGGGACCGGGGGGCTCCGGGGGGCGGCAGGCTCCAGCCCTGCCCCGGCCCCCTCATCACCAGACCCGCCGCGCTCCTCCACCCACGACCCTCCGGACCCTCCTCCCCGGTGAAGTCCGAGTCTTCGGATCAAGATGATGCTTCCTGGCTGATGAAGTCCTCGTGCGCGTCTCCTCCACCACGTCAGTTGAGTCCGGCCACGTGTTCCCTCAGAAAACACAAGACGAATCGCAAGCCACGAACCCCCTTCACCACCAGTCAGCTCCTGGCGCTGGAGCGGAAGTTCCGGCAGAAGCAGTACCTGTCCATCGCAGAGCGGGCGGAGTTCTCCAGCTCTCTCTGTCTGACCGAGACTCAGGTGAAGATATGGTTCCAGAACCGACGAGCCAAAGCCAAGCGTCTGCAGGAGGCGGAAATGGAGAAACTGAAAATGGCTGGTAAACCTATGCTGCACTCGGGCCTCTCTTTACCGTTCCCCCTCGGCGCACAGCCGCaggcagcggcggcagcgctcCTGTACGGACACTCGGGACAGTTCCCCTTCCACAGATACATGCTGCCCATGCCTCCACTGGGGATGTACTCCTCTCCTGCCACCTATAACATGTATCACCTGTCCTGAGAGGCAGCTGGAAGAAGAAGGATTCTTTGCTCAGACTGAGACTGGTGGACTGACTGGTTCTGATCAGTGGTGCCTAAACATTAATACGAGTGGCGAGTGCCAGGTGACAGGTGCTCAGAAAaccacaaaagtgtccacaTGTAATGTATCTCCATTGATACCAGCTTTAAACAACTGGTGCCTCAAACAAAAGGTCTTAATTAATAGACCAAAGTCTGGGGAGACCTTTCCTGAATGCACCTTATTCTGAAGACTATGCAAGTTCAGATGCTGGATATTCTGAACTGATACAGTACTTGGTTGAGGATGGAATTGGGTGGGCTGAAGATGAGCAGTGATATCTGATAGGTCTGGTATCACTTTgtccctgtttacacctggttacTTTATGCGATTAGTATATGGATTGTGTCCTGGTAAGAGTTTagccacatgcatttacacttggtGGTGATCAAATGTGTTGCCAGTTAGTCCGATTTGAATCTGTTTGCAGGGGGTTGGacaaaatatgcaaattaatcagGTTTGCATTGGAAAGACAGAAGTAGGGCTTCACAGTGTATTGTTTTAGCATCAATATCACAATGTGCacatgcacaatagtcacattgcTGCTTAGAACAAAGACAAATTCGAACTTTTCTCATTTTACACTATCAACCagattattgattatattcacataatatatcatttattttactcaaatcatTGATGCACAgacacttaataataatataaaatgatgGATCAGGGAATTTTGGGAAATTTGTTAAAATCCttgtatttgttatttgttgtaatattgcaatgtatatcgcaaaacaacaaaatatcacaatgtattttttttcccaatatcaAGCTGCCTTAGATGAAGGTGTTTGCACTGCTGTTATTGAGAGCCTGTTAATTAGACACCTGGCATTAACATGCAGTTTTGATGAAAGGATCACATTCTGATTTCATTTGTCCACATAAAAAGCCAGGTGTGAACACTTCCAAGGCTCCAATCTAGATTCCAGATTACAATACAATCAT

Function

GO: NA

KEGG:

id description
K09341 MSX; homeobox protein MSX

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96894 lncRNA upstream 105752 7061692 ~ 7100725 (+) True G71805
TU96900 lncRNA upstream 148202 7057734 ~ 7058275 (+) True G71810
TU96898 lncRNA upstream 153153 7053023 ~ 7053324 (+) True G71808
TU96876 lncRNA upstream 334113 6872148 ~ 6872364 (+) True G71787
TU96826 lncRNA upstream 338073 6867048 ~ 6868404 (+) True G71747
TU96963 lncRNA downstream 93663 7306159 ~ 7306542 (+) True G71858
TU96967 lncRNA downstream 97286 7309782 ~ 7311864 (+) False G71859
TU96968 lncRNA downstream 97286 7309782 ~ 7311864 (+) False G71859
TU96964 lncRNA downstream 97536 7310032 ~ 7311864 (+) False G71859
TU96970 lncRNA downstream 97536 7310032 ~ 7311864 (+) False G71859
XM_007253575.3 mRNA upstream 32929 7139036 ~ 7173548 (+) True LOC103023840
XM_007253577.3 mRNA upstream 32929 7139036 ~ 7173548 (+) False LOC103023840
XM_022672032.1 mRNA upstream 32929 7139036 ~ 7173548 (+) False LOC103023840
XM_007253576.3 mRNA upstream 32929 7139036 ~ 7173548 (+) False LOC103023840
XM_007253578.3 mRNA upstream 32929 7139036 ~ 7173548 (+) False LOC103023840
XM_022672039.1 mRNA downstream 400216 7612712 ~ 7652490 (+) True LOC103027052
XM_007258578.3 mRNA downstream 459062 7671558 ~ 7674663 (+) True LOC103027348
XM_007258573.3 mRNA downstream 507384 7719880 ~ 7725813 (+) True mars2
XM_022672043.1 mRNA downstream 1227641 8440137 ~ 8641348 (+) True spock1
XM_022672044.1 mRNA downstream 1462353 8674849 ~ 8687469 (+) True LOC103031395
TU96877 other upstream 320936 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 667683 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 1168729 6037676 ~ 6037748 (+) True trnaa-agc_15
trnaa-agc_14 other upstream 1169603 6036802 ~ 6036874 (+) True trnaa-agc_14
TU96351 other upstream 1700839 5499908 ~ 5505638 (+) True G71414
TU97487 other downstream 1930403 9142899 ~ 9149419 (+) True G72281
TU97933 other downstream 2866083 10078579 ~ 10082140 (+) True G72621
trnar-ucg_4 other downstream 5390856 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 5658988 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 7436333 14648829 ~ 14649551 (+) True G73533

Expression Profile