RNA id: XM_007253575.3


Basic Information

Item Value
RNA id XM_007253575.3
length 5597
RNA type mRNA
GC content 0.43
exon number 11
gene id LOC103023840
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 7139036 ~ 7173548 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCACCTACCCAGCTAGCTCTCCGTCTCTCCCTGGGAAAGAACAGCCCAgtcagtgtgtgagtgcaggctGGGGAAAAAATAGGATGACAACGAGGCAGAAGAAGGTATTCATCGAAACTCATCAAGAATCAACGGACTCAAAGGCAAGTGAGAAGAACCAGGATTAGGCCACACAGCTAAATGGGGGATTACAGCTTTGGAGTTCTGGTTAAAAACAACGCCTCTAACAAATCAGTATTCCCAGTACGGATTCACCCGCACCTGCAGCAGCATCCGGTTCACCACCACACGACTCCACCGAGTCCCCCCGCTTTCATTAACAGCAATACGCCAGCCAGCGGTGGAAATGCAGGCTCCGCTTGGCTTTTCCCTGCCGTGACGACCCACTCTAACATGCAAGATGAGATCCTGGAGTCTGACAAATCAAAGACCCAGCAAGACGACCAAGAAGGACAAGACAAGCAGCCTCTTTCTCCGCAAGGCCACCAAGAAACGCCGAGCATCATATCTGACTTGGACAACAACATGCCGGAAGACGGGCAGCTGGAGAAGGGGACGGTTGAGAACGGCAATGGAAAAGAAAGCCTTCGACTGGAATCTCCAGTGCTGTCCGGTTTTGACTACCAGGAAACGACAGGGATGGGCACTCTGGCGCaatccagcagctcctcctcATCCTCGCTGGTTGGATTCAGCAGCTGGTCCACCGCAATCCCTACCAACCCCTCAACCATGATCGAAGAGGTGGGTTTCTTCAGCCAGGCTGCCACCACCACCAACGCTCCTCCACCACTGCTGTTCCAGAACTTCTCTCATCACACCAGCCCAGGTTTTGGCGGTAGCTTCTCCCACCAGATCGGGCCTCTGTCCCAGCACcatcctcctgctcctcctcctccaccaccccCTCACCCCCACTTCCAGCACCCCCACAGCCAACACCAACAGCACCGCAGGTCCCCCGCTAGCCCACACCCTCCACCCTTCAACCACCGCAATGCTGCTTTCAACCAGCTGCCTCATTTGGGGAACAACCTAAACAAGCCGCCGTCTCCGTGGGGCAACTACCAGAGCCCGTCCTCCACTCCTTCCTCCAGCTCCTGGAGCCCAGGTGGAGGTTACGGGGGCTGGGGAGGTTCTCAGGGCCGAGAGTACAGGCGGGGTCTGAATGGAGGAGTGACTGCGCTCAGCTCCATCTCGCCACTAAAGAAGTCCTTCCCGAATAACCAGGTTTCATCCCAGAAGTATCCTCGCAACAACACGAGCTTCAACACCAAACCCTGGATGGAGGATAACATCAACCGCAATGACAGTATCTTTCCTTTTCAGCAGGAGCGCAGCCGGTCCTTTGATGGCTTCAGCATGCACTCTCTGGAGAACTCCCTGATTGACATTATGAGAGCTGAGCAGGACTCTTTGAAAGGTCGCTTTGGCTTTTCTCATCCGAGTGGAGAAGGCTCTCTGTCTGGAAACGCAAGGAATTATGGGAGGCGACGAGGTCACTCATCCCTGTTCCCCATGGAGGACGAGCGCAGTTTTGGGGAGGATGAAAGGTCCGATCAGGGCCTCGGTGGGCTGGGCTCTCCACACTGCTTCCCTCATCAGAACGGGGAGCGTATCGAGCGTTATTCTCGCAAGGTCTTTGTTGGTGGACTCCCTCCTGATATAGACGAAGATGAGATCACTGCTAGTTTCCGCCGGTTTGGCCACTTGTTTGTGGACTGGCCTCACAAAGCAGAGAGCAAATCCTACTTCCCACCTAAAGGTTATGCGTTCCTCCTGTTCCAGGAGGAGAGCTCTGTCCAGGCTTTGATCGATGCCTGTATGGAGGAGGAGGGCAAGCTGTATCTCTGCGTCTCCAGCCCCACAATCAAAGATAAACCAGTCCAGATTCGTCCGTGGAATCTGAATGACAGTGATTTTGTGATGGATGGCTCTCAGCCCCTCGACCCCAGGAAGACCATCTTTGTTGGAGGAGTTCCACGACCTCTTCGAGCAGTGGAGCTGGCGATGATTATGGACCGGCTGTATGGAGGGGTGTGCTATGCTGGCATTGACACTGACCCTGAGCTGAAGTATCCCAAGGGGGCTGGGCGGGTGGCCTTCTCCAACCAGCAGAGCTACATTGCTGCTATCAGCGCTCGCTTTGTGCAGCTGCAGCATGGCGAGATCGATAAACGGGTGGAAGTGAAGCCATATGTTCTGGACGACCAGCTGTGTGACGAGTGTCAGGGCACACGCTGTGGGGGGAAGTTCGCCCCTTTCTTCTGTGCCAACGTCACCTGTCTGCAGTACTACTGTGAATACTGCTGGGCAGCCATCCACTCGCGCGCCGGGCGGGAGTTCCACAAGCCCCTGGTGAAGGAGGGCGGAGACCGGCCGCGCCACATCTCCTTCCGCTGGAACTGACCGCGGGGGAGGCGCTGTGGGGCACAGCTGACTTAACTTGCATACATgcacttttcctttttttgctaGTTCCTTTTTATTTcgatttcaattttttttaagtgaaaagatttaatttattctaagtttttaattttttgcagaTGATtaatgatgatgacgatgacgatgatgttaatgatgacgatgataaaagaaaacagtataatcccaattccttttttttttattattattattattttttaattttgttataaATCTAAGTTGGTGCGCATGAAAAAAACTTGAATGCTTTAGATTTCTACATATGGATGTTTAGCCTGACTtgactctaaaaaaaaaattgctgttttatttttattgtactacTGATGAGGCCTCActttttttcattgtgttggGTCACCTTTAGGACGTGGACAGGATGCACTTGAAACTGGAGTGGACTACATCCAGAGAAAGAGGCAGGATCATTAAAGGTGTATGTTTCACTGTACTTGCAAATGGTGATGACTAGTTCTCAGACACTAAGCTCATGTAGTTgcatgactaaaaaaaaaaaatacactgatgcAGGTCTATTTATTCGTTCTAGCAAAACATACGTGGACCTTACTAGCAGGAGACCAAATCTACTGTATAACTAACAAAATGCTGaacttctgattggctggtttaGCGTTAATCGGGGTAGCGGGGTAGCCAGGCTGGGCTGAGATAAGCTTCCAGCCTTCCTTGGAGAGGTGGGTGATGGTACATACCTACGCTTAAGAGTTAACGCTAACCGCTGCCATTTACATTCACGGAAAAGCAGAACGAAATCTGTAGAAATATATGCATTATATCTGTACTCACTGCTGTCACTTTGCGGTTAACTTTTTGTGGCCACTTCAACTAAAACAGTCCACTGGCCATGTGATCCTACTCCCTCTATACGCCTCCTGACCCTTCAAACTCGGAAGACGGTGGCCGTGGTGCGGTCAGCGCAGCAGTAAGGTTTTCTGTGACTTAACCAACTAACTCTCGTATTGCCTGATCCAAATTTGCAGACAGGCAAACCAAAGATAAGCCTTATAAGAGATATATTAATATCAAAAGTCTTGACCTCTGTGAAATCATGGAACTGATTGCTGTGGAAAGCAAAGAGAGGGAGAGTTGAGTGTTTTGCTTGATTTGGTTtgattattaaaacaaacaaacaaacaaacaaacaaacaaaaaaaaacagctgataaGATTCCTTAAGAAATAACTGGTTATGGCAGTAACATTGCTCACTTGTCAGGGAATTTGTGCTAAAAAGCTAACTTAATATTGTAGTACTAATGAAGAATTACCACGTGTTGTACTGATTGATAGTATTTGATTGCATGACTTTTTTTCCAAGAGTTTTTGCCGTTCTGATCGAGCATTGTGGTAGCTGAGCACATTTCAAAGACTTTTCTGTAAGAGAgaaacaaatattattttatacatggTCTGCTGATTTTTGTACTGTGTTTTCTAGATGGTTATTTTGTCATTAACATAAACATATGCACTACTTTTTCTATATATTCTTTTTCAAAGTCATTATTTAGGCACATTTTCTTTTCTCACAAAATGGAAAGTCGTTTTGCGATACCTCATTTTTTTCACTTGTTGGGTATAGATTTTGTACCTTTGTTACAAAGAGACCTGGATATAAGGCAAACCTTAAGAAAAGTTAATATAATTTTCGATTAAGCTTTTTATATgcataaatctatatatataatagcgGAAATTTGAGGAGTAAATATTGAAGCGAGCATGCCGAGAACACCTTTAAGTGTGTGGCACTTAGTagaatatctaaatatttaaatatctaacaTTTACTGAACTGTTCTCGATAACGTTGAGGATTCCTTCCCTTGTTGCTGACTGTAGGAATAAAATTACGATAGGATGCACCTTGTATCTCAATTAGGAATGTTCCATATAGTGAAATCTCAGTATGTATCAGTAAGTATAATCCTGAATGGCAGACAAGCTCATTTTTGCCAAGTATGCATGACCTAAGACAAAGATAATGATAATTTGATATGGGTCTTGGCTTACGTTtgcattttgttatattttttttatgtaactcCTTTCAAATCCTCCTTGTCTGACCCAACTACAGCTTCTATTTCTTGTATTTGAGAGATGGCCTGGCAGAAAACAGGCTATTTTCCGGCTACATTCAGAAAGACGTCTTCAGAAAGACGTCTTCAGAAAGACTTTCAGTAAAACCGGTACACCCCGCAGTGGTTCCGGGGCTTTGAGACTTGAATGTGATAATACTTGCAAAATAACCTCGAGTTATgtgcaatatttatatttttatttcttctctccAGAAACAATCTCTGCAGCAGTATAAATCTTcagttatatttaattataactCTCAGTTCAGTTTTAACCCAAATCACATCCCTCTTTATCACTCCTTTATTAGTCTTTATCAATCCATTATAGCCTTCCTTTTTGTGTTCTCTGAATTGTATACTAAAAATACCActaatatgtgtaaaaaaaaaaacaaagaaaaaaaagaagaaaagaaaaaaggttatttttactttttgtgtaTTCACATATTTTCCTacttaatttcataatttcatgctactgtgattaaaatcattGTAAATACTAagtgaaaaaaagtgtattgtTATTTTCGATTGGAATGTTAAACTTTGGTCAAACTTTGAACATGGCTATTATcgattgttaaaaaaaacggTACACTGATTAGTTTGAAGttttattaatcacacttgtGCTTCATGTCtacagaaataagaaaaaaaaaatcagaatattctCTGTGTAACTGCTAATTTAAATTGACATAGTTTATAATGGTATCAAAGGTTGTATttatcaatagatttttttaataagaagtATAATTTTTTGCTATGCCATTTataagtttagatttttttttattattattattattattattttctattttaccaCCGTATGGAAAACCGTTATGTACAAGAAAAACATCATTTTATAGTTGGGTTAGTCATAAATGTGCTGTTGTAGATCAAGTGCAATGTCTTAATTATTTGCAGCCGGCTATTTATAACAGTAGGCctaatttttaagtatttgtatTGTGAAATGTTGAATGAATAAACTTAATAGCAAGCACTGTA

Function

GO:

id name namespace
GO:0036294 cellular response to decreased oxygen levels biological_process
GO:0035235 ionotropic glutamate receptor signaling pathway biological_process
GO:0042149 cellular response to glucose starvation biological_process
GO:0002931 response to ischemia biological_process
GO:0071230 cellular response to amino acid stimulus biological_process
GO:0043524 negative regulation of neuron apoptotic process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0030425 dendrite cellular_component
GO:0005634 nucleus cellular_component
GO:0014069 postsynaptic density cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K02602 CPEB, ORB; cytoplasmic polyadenylation element-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96894 lncRNA upstream 38311 7061692 ~ 7100725 (+) True G71805
TU96900 lncRNA upstream 80761 7057734 ~ 7058275 (+) True G71810
TU96898 lncRNA upstream 85712 7053023 ~ 7053324 (+) True G71808
TU96876 lncRNA upstream 266672 6872148 ~ 6872364 (+) True G71787
TU96826 lncRNA upstream 270632 6867048 ~ 6868404 (+) True G71747
TU96963 lncRNA downstream 132611 7306159 ~ 7306542 (+) True G71858
TU96967 lncRNA downstream 136234 7309782 ~ 7311864 (+) False G71859
TU96968 lncRNA downstream 136234 7309782 ~ 7311864 (+) False G71859
TU96964 lncRNA downstream 136484 7310032 ~ 7311864 (+) False G71859
TU96970 lncRNA downstream 136484 7310032 ~ 7311864 (+) False G71859
XM_007253581.3 mRNA upstream 198674 6933390 ~ 6940362 (+) True bnip1
XM_022672030.1 mRNA upstream 420008 6678596 ~ 6719028 (+) True LOC103042411
XM_022672027.1 mRNA upstream 505161 6605304 ~ 6633875 (+) False LOC103026234
XM_022672028.1 mRNA upstream 505161 6608340 ~ 6633875 (+) True LOC103026234
XM_007253586.3 mRNA upstream 579301 6541416 ~ 6559735 (+) True LOC103027224
XM_007253574.3 mRNA downstream 32929 7206477 ~ 7212496 (+) True LOC103023202
XM_022672039.1 mRNA downstream 439164 7612712 ~ 7652490 (+) True LOC103027052
XM_007258578.3 mRNA downstream 498010 7671558 ~ 7674663 (+) True LOC103027348
XM_007258573.3 mRNA downstream 546332 7719880 ~ 7725813 (+) True mars2
XM_022672043.1 mRNA downstream 1266589 8440137 ~ 8641348 (+) True spock1
TU96877 other upstream 253495 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 600242 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 1101288 6037676 ~ 6037748 (+) True trnaa-agc_15
trnaa-agc_14 other upstream 1102162 6036802 ~ 6036874 (+) True trnaa-agc_14
TU96351 other upstream 1633398 5499908 ~ 5505638 (+) True G71414
TU97487 other downstream 1969351 9142899 ~ 9149419 (+) True G72281
TU97933 other downstream 2905031 10078579 ~ 10082140 (+) True G72621
trnar-ucg_4 other downstream 5429804 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 5697936 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 7475281 14648829 ~ 14649551 (+) True G73533

Expression Profile