RNA id: XM_007253581.3


Basic Information

Item Value
RNA id XM_007253581.3
length 864
RNA type mRNA
GC content 0.49
exon number 6
gene id bnip1
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 6933390 ~ 6940362 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTGCGGAGCAGTGCGTGGAGCTGCGGGTCTCTCCAGCGCTGCAGACATGGCTGATGTCCACGTCCGAATATGTGAACAAGAGATTATTAAATATGATCTGGAGATTAAAGCTCTGATACAGgaTATCAGTGAGTGCACAGGTCCACACAATGAACTGACTGAGCTGAACTGCAAAGTGAAGGAAAGGTTCAGCCGTCTCCGGCAGAGGATACAGGATCTGGAGCAGATGGGTAAGGAGCAGGATAAGGAATCGGATAAGCAGGTCTTACTCAAAGAGGTGGAGGCCCATCGTAAACAGATGCTTAGTAATCAGACAGCATGGAGGAAGGCCAATCTGGCCAGTAACCTGGCCATCGATAAGCTGGAAAAAGAAGATCTGCTGAATGTTGGTGGCACTGGAGCGAGGCAGAGAAAGATGACTAAAGAGAGCCTGGCCCAGACGTCCAGTGACATCACAGAGAGCCTGATGAGCATCAGCAGGATGATGTCGCAGCaggtgaagcagagtgaggagACCATTAGCACTTTGTccACTTCTTCAAGAACGGTGCTGGAGACCAATGAAGAGTTTAAGGCCATGACTGGGACCATACAGCTGGGGAGAAAACTCATCACCAAATACAACCGGCGGGAGCTCACAGACAAGCTGCTCATCTTTCTGGCCCTGGCACTCTTTCTGGCCACTGTTCTGTACATCCTGAAGAAAAGACTGTTCCCTTTCCTCTGACCAGATCACCCTTCACACACTGACCTGCAGAGCTCCAACACTATGTGACACTTTTCCAGAAACAGGTTATATTAAAGTGGACTGAAGTGCCTCAACAGTGGATATCCACCATTAAACAACTGACTTGCACCCTTAA

Function

GO: NA

KEGG:

id description
K08497 SEC20; protein transport protein SEC20

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96876 lncRNA upstream 61026 6872148 ~ 6872364 (+) True G71787
TU96826 lncRNA upstream 64986 6867048 ~ 6868404 (+) True G71747
XR_002650233.1 lncRNA upstream 271387 6656680 ~ 6662003 (+) False LOC111193077
TU96785 lncRNA upstream 271393 6639666 ~ 6661997 (+) True LOC111193077
TU96786 lncRNA upstream 271393 6656560 ~ 6661997 (+) False LOC111193077
TU96898 lncRNA downstream 112661 7053023 ~ 7053324 (+) True G71808
TU96900 lncRNA downstream 117372 7057734 ~ 7058275 (+) True G71810
TU96894 lncRNA downstream 121330 7061692 ~ 7100725 (+) True G71805
TU96963 lncRNA downstream 365797 7306159 ~ 7306542 (+) True G71858
TU96967 lncRNA downstream 369420 7309782 ~ 7311864 (+) False G71859
XM_022672030.1 mRNA upstream 214362 6678596 ~ 6719028 (+) True LOC103042411
XM_022672027.1 mRNA upstream 299515 6605304 ~ 6633875 (+) False LOC103026234
XM_022672028.1 mRNA upstream 299515 6608340 ~ 6633875 (+) True LOC103026234
XM_007253586.3 mRNA upstream 373655 6541416 ~ 6559735 (+) True LOC103027224
XM_022672024.1 mRNA upstream 412919 6509961 ~ 6520471 (+) True LOC103042719
XM_007253575.3 mRNA downstream 198674 7139036 ~ 7173548 (+) True LOC103023840
XM_007253577.3 mRNA downstream 198674 7139036 ~ 7173548 (+) False LOC103023840
XM_022672032.1 mRNA downstream 198674 7139036 ~ 7173548 (+) False LOC103023840
XM_007253576.3 mRNA downstream 198674 7139036 ~ 7173548 (+) False LOC103023840
XM_007253578.3 mRNA downstream 198674 7139036 ~ 7173548 (+) False LOC103023840
TU96877 other upstream 47849 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 394596 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 895642 6037676 ~ 6037748 (+) True trnaa-agc_15
trnaa-agc_14 other upstream 896516 6036802 ~ 6036874 (+) True trnaa-agc_14
TU96351 other upstream 1427752 5499908 ~ 5505638 (+) True G71414
TU97487 other downstream 2202537 9142899 ~ 9149419 (+) True G72281
TU97933 other downstream 3138217 10078579 ~ 10082140 (+) True G72621
trnar-ucg_4 other downstream 5662990 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 5931122 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 7708467 14648829 ~ 14649551 (+) True G73533

Expression Profile