RNA id: XM_007253582.3


Basic Information

Item Value
RNA id XM_007253582.3
length 4239
RNA type mRNA
GC content 0.47
exon number 1
gene id LOC103025929
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 6864024 ~ 6868262 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgtgtgtttgtgtgtgtatgtgtgtgtgtggaagtgggCTGTCCTGCGTGACGTCACCACCCCGCTATCTCTCAAGCGCACATTCCAACATTTCATCCGGAGAGCAGCGCGAGTTTGGCGAGGCGCGCGACACTGGAGTGACGGACAGGCTGACAGACAGCGCGCGTGCAAGAGAGGGAAGATAAAAGCGTGCAGGatcaaagaaaggaaaaaagcgACATTCCCGCGCTCGGATGAAGCTCAGTCcctcttttatctcttttatatgttttttccaTCGTGGATTATTTCTTGGACCACCACTATGTCGACCATCATTAATCCTGACTAGAGTGTGAACCGTGTGCTCGCGCCTTGGGTTTGTCCGCGCGCGCCGGAGAGCTCGAGTGGTTCACCATCCAGACTACTCACTTacctatctctctatctatctatttatatcCACTGGAGACGATGCGCGCATCATGGACTTGACGCACTCCAATGCATCCACGCATGACTCCACCACCGCTAGCACTACCAGCAGCCCCGACAGTAGTGGCCATGGGGGGCTCACGGAGGGCTTGTCCTTCTCCAACACAACCGCGCGGCCGTGGCCGCACGCGGACGTGTCCGCAGCCTTCATCATCCTCGTTGTGTCGCTCCTCATCCTCCTGACCATCGTCGGGAACGCGCTGGTGATCGTGGCCGTGCTGACGAGCCGTGCCCTTCGCGCCCCCCAGAACCTCTTTCTCGTGTCCCTGGCGTGCGCGGACGTGCTCGTGGCCGCGCTTGTGATCCCGTTCTCGCTCGCCAACGAGGTGATGGGCTACTGGTACTTCGGCAGCGTGTGGTGCTCGCTCTACCTGGCGCTGGACGTGCTCTTCTGCACCTCGTCCATCGTGCACCTGTGCGCCATCAGCCTTGACCGCTACTGGTCGGTGACGCGCGCCGTGCGCTACAACCTAAAGCGCACGCCGAGGCGCGTGCGCTGCGCCATCGCCGTCGTGTGGCTGGTGTCGGCTGTCATCTCCTTCCCGCCCATCGTGCTCACGCGCCACGGCGAGGGAGAGTGCCTGCTGAACGAGGAGCCGTGGTACATCCTCTCCTCCGCGCTCGTGTCCTTCTTCGCGCCCGGCTTCATCATGGTCACCGTCTACTGCAAGATCTACCGCGTGGCCAAGCAGCGCTCGGCCACCGTGTGCGCGGCGCAGAACGGCACCATAGCGGCGGCCGTGGCTAAAGCGACGGCGGCAGCAGCAATGCGCGCGGACGCCTGCGCCGTGCGCCGCCGCGCCGCCGACACGGAGAGCGCGAGCAGCCACAGCTCGGGGAGCGAGGCGCGTCGCGAGGAGCTGGACGACATAGACCTGGAGGAGAGTTGCGTTGGAGGGAGGGTGCGGGACATCGGAAGCGGGGGTGCGGGAGGAGGAGCGGGTGGAGGTGGAAAAGTAGGAGGACGCGCACCGTGGGCCACCAGCCGCGCGCTCATCCCGCCGAACAGACCCCCTTACCACCACCAGGCACCGCGCACGGGCGCGTACCGGAGCAGAGCCGCGCAAATGCGCGAGAAGCGCTTCACCTTCGTGCTGGCCGTGGTGATGGGGGGCTTCGTGCTCTGCTGGTTCCCCTTCTTTTTCACCTACAGCCTGAGCGCGCTGTGCAGGGAGAGCTGCGCCGCGCCGGAGGGGCTCTTCAAGCTCTTCTTCTGGATCGGATACTGCAACAGCTCGGTCAACCCCATCATCTACACCATCTTCAACAGGGACTTCAGAAAAGCCTTCAAAAAGATACTGGGGCTCAATCAGCCTGCGAGGACTTAATGCTCAACAGGGCTTCTGCTCATCGCCACAAAGGGACATCCATCACTAAAGGAACAGCCATAGATGTGACGGAACTTATATATGGCTAAAGGAATGTGCCTAAAATATGAAGGAACATACCTAGTGCTAAAGGAATATAATTAGCACTGAAAGAAAATCCCTAGAGGTGAGAAAATAAAGCGCACAGAGGGCTGGAGAAACATCCCTAGATCCCTAGAACTGATGCAACTTTAAAGGAACATTCCTAGCATTGAAGGAATATACTCAGTGCCGAAGAAATATAGAGcgaatatactgtatgtagctGAAGGAAGTCACATAGGGAATGTTAAAGTAACACGCTGTAGGAAAAGTTTGTGCTGATCTACActgtgtgtccaacagttttaGAAACTGTTTAATATGAAGCTTCTTCTGAACTCATTGGtattaataatgatatttaTAATTCAGAAGTTGTTTAACTGTAGAAAAACTTGCAGGTTCATAAACTTTACAGAGATGGTGATGGGAATCAAATTAAAGCCATTTTATTACTGACAAAAAAGTGCCAATGCACTGATATGTGTCttctgagattaaaatatattgCTGATGGTGGGAAAATAGTGATTCTCTGACTTGGGACTGgaaacagaaactgaaaaaaaaaaacagttactgtGCTGAAAAACTGTATCATACCTAGGGCTGAAGGAACATAATTAGCAGTGAAGGAAGGTCCCTAGAGGTGGAAAAAATGCTATTGCTGAAGGAAATCCCATAGGGAGTTTTAAAGTAACATACTTAGAGCTGAAAGAAAAGTTATGCTCTGAATGTATTCAAAAACGTGCTGATCTACACTTTGTGTCCAACAATTTTAGGCTCTGTTTAATCTGAAGCTTCTTTTGAACTCATTCCTATAAAAGAGAATTCTTTCTAATTTCTTCATAATTCAGAAGTGGTTAACCATTGAAAAACTGGCAGGTTCTCACACTTTACAGAGATGGTGATATGATGAAAACCAAATTAAAGCCATCTTAGTTACTATCAAAAAAGTGCCAATTAACTGATATGTGTCTTCTGAGATTAAAATGTAATGCTGGTGGTGGGAAAATGGTGATTCTCTGATTGGGACTGGGGACAGAAGGCTGAAAAAAATAGTTACTGTGCTGAAAATGTACATCATACCTAGGGCTGAAGAATCATAGAGGGCTGGAAAAACAGTATAAGCAGTGCTGAAGAAATTTAACCTATATCTTAAGGAATATAGTTCCCTAGAACTGAtgcaacttttaaaacttttgtagAGCTGCATGTTACACCAATGCTAGAGAAATATTGAAGGAATGTGCTCTGAATGTGTTCAAAAATGTGCTGATCTACACTGTGTGTCCAACAGATTTAGGCTCTGTTTAATCTGAAGCTTCTTCTGAACTCATTGCTCTTAAAGAGAATTGTTCCTAATTTCTTTAAGATTTAGAAGTTGGTTAACTGCAAGTTCATGTACGTGACAGAGATGGAGGTTTAAACCATATTAAAGCCATTTTAGTTAGTATCAAAAAAGGTGCCCATTATTTGATATGTGTCTTCTGAGTTTTATGTATGATGCTGATAATTCGAAAAAATAGTGATACtgtgataaataaaaaacatatatagtgCTGAAAATCTATATATAGCATGGAAGGAACATATTTAATGATAAAGCAATATACCTAGTGCTGAGGAAACATGACTAGTGCTGAAGGAACATGGTTAGGGttgggaaaacaaacaaaggaacAAATGAAACTTGAAGAACTTGAAGTGAAGAAACATAAGTAGCACTGAAGTAATGTAGTATTTAGAGCTGAAAGATCATAGAGTGTCATGAAGAAACATACACATGACTAAGAAACATTTCTAGTGCTGAAGGAACAGGTAGCTAGAACCTGAGGGAACTGACCTAGTTCCGGTAATGTCCCACTGTAAAACCCAGTAAAtgaatttaacttaaaaaatgggaaactacaacaaaaatgacaaacaacaacaaatattcTGTATATTAAGTAGGTTTTAGTATGTAATTTAACGATACagtaacatattttaaagaAGCTACTTTTGTATTCTATAGgtgaacaaaatatatttaaatttagtaattttcatcaataataaaaagaaaaatatatatctaaaataGTCATGGAAAAATAGATGGAGAAACAAAATGCTATAGATTGAACACTACagaacaggggtcggcaataggtgacccacgggccagatgtggcctgcaagcatgaaacatctggcccgtgaggttgtttgaactataatgatcaataatgaaaaaaatgaaattctcTTGCAAACTTTTGTTTAATGTTGgtattcctcccctgtctctctgtcgcgctcggcatgactttagtttctgcccgttctcatttttccacccgttcttggg

Function

GO:

id name namespace
GO:0007194 negative regulation of adenylate cyclase activity biological_process
GO:0071875 adrenergic receptor signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0004938 alpha2-adrenergic receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96852 lncRNA downstream 732 6755432 ~ 6863292 (-) True G71766
TU96851 lncRNA downstream 732 6787520 ~ 6863292 (-) False G71766
TU96836 lncRNA downstream 131435 6714141 ~ 6732589 (-) True G71755
TU96776 lncRNA downstream 230375 6627067 ~ 6633649 (-) True G71712
TU96771 lncRNA downstream 251079 6605271 ~ 6612945 (-) True G71708
TU96879 lncRNA upstream 13270 6881532 ~ 6885591 (-) True G71790
TU96882 lncRNA upstream 43152 6911414 ~ 6911709 (-) True G71793
TU96907 lncRNA upstream 67536 6935798 ~ 6936080 (-) True G71817
TU96913 lncRNA upstream 114541 6982803 ~ 6983003 (-) True G71822
TU96916 lncRNA upstream 184636 7052898 ~ 7053319 (-) True G71825
XM_007253585.3 mRNA downstream 270900 6585674 ~ 6593124 (-) True LOC103026932
XM_007253587.2 mRNA downstream 280282 6570816 ~ 6583742 (-) True LOC103027842
XM_022672025.1 mRNA downstream 325242 6522057 ~ 6538782 (-) True LOC103036141
XM_022672026.1 mRNA downstream 325243 6522057 ~ 6538781 (-) False LOC103036141
XM_007253597.3 mRNA downstream 548183 6293684 ~ 6315841 (-) True hars
XM_007253580.3 mRNA upstream 81314 6949576 ~ 6956193 (-) True LOC103025318
XM_007253579.3 mRNA upstream 116956 6985218 ~ 7006934 (-) True LOC103024994
XM_007253573.2 mRNA upstream 392719 7260981 ~ 7265921 (-) True LOC103022894
XM_007258580.3 mRNA upstream 556421 7424683 ~ 7444873 (-) False kif3a
XM_022672035.1 mRNA upstream 556421 7424683 ~ 7444873 (-) True kif3a
TU96859 other downstream 39268 6777239 ~ 6824756 (-) True G71771
TU96529 other downstream 1022337 5829621 ~ 5841687 (-) True LOC103035656
TU96400 other downstream 1387649 5471666 ~ 5476375 (-) True G71458
trnaw-cca_42 other downstream 1939953 4924000 ~ 4924071 (-) True trnaw-cca_42
TU96095 other downstream 1979536 4882170 ~ 4884488 (-) True G71235
TU96917 other upstream 188848 7057110 ~ 7057643 (-) True G71826
TU96981 other upstream 441513 7309775 ~ 7312926 (-) True G71862
TU97555 other upstream 1771276 8639538 ~ 8645601 (-) True G72336
TU97699 other upstream 2297616 9165878 ~ 9174309 (-) True G72449
TU97707 other upstream 2354430 9222692 ~ 9225559 (-) True G72453

Expression Profile