RNA id: XM_007253586.3



Basic Information


Item Value
RNA id XM_007253586.3
length 3559
RNA type mRNA
GC content 0.44
exon number 19
gene id LOC103027224
representative True

Chromosome Information


Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 6541416 ~ 6559735 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


GCTGGCAGCCTCCCGGTCATGTCACTGCCAGTTGACTCCAGAACAATGGCTCAACTCTCCCTCTCAACAATTAGCGTAAGAGGGTCAGCTTTCAAAAATAAGGATGCTGACCCACCTGCTAGACTTTCACCTACACCACCATCTCAGAAGGAGCTCCAGCGGGGTCAGTCAGCATGTACGGTCTGCTGTGTGAGAGTCTGCATGACTTCATTAAGGAGTCGTACGGAGATGATGTGTGGAAgctggtgagagagagagctgatgtTAGACTCCACTCCTTCGTCACTCACCAGgtctaCAGTGAGAGTGTAATCCCACGGATAGCGAAAGCAGCCAGTGGGGTTACAGGCACCCCCTATAATGAGCTGATGAACTCCTGGGGGGTTTACTTCCTGGGCTTTGTGGGAAAGTATGGCTATGACCGGATCCTCAAGGTGCTGGGGCGTCACGTGCGTGATTTTGTGAATGGTCTGGATAACCTGCATGAGTATCTGCGCTTCAGTTACCCTAAAGTTCAGCCCCCCACCTTCTTCTGCCAGGAGGAGTCCGCTACTGGAGTCACACTTCACTACAGGAGTAAGCGGAAGGGCTACCTACACTATGCTATGGGTCAGCTCAGACAGATGGGGAAGCAGTTTTATGATACAGACATCCACGTGGAAGTTCTCTCTGAGCAGCTGGTGGGAGATTACTCCCACGTCACCATGAGGTTGAACTTTGATAATTCTGCATATCGATACATCCAGAAGGAAGATGAAGAGGAACAGGAGATTCTGCCAATCACCAGCGACTTTTTCTTCGAGGTCTTCCCTTTCAACATTGTGTTCAGACAGGACATGGTGGTGCACAACGTTGGCTCTGGTTTGGCCACAGTGTTCCCTGATCTGGATGGGAAGAAGATTAACGATGCGTTCCTGCTGGCTCGCCCCCTGGTGGAATTCACCTGGAACATGATCATCTCCCATCCCAACAATCTGTTTGAAATCATGTCTAAAGAGCCTGTAAAGAGGGAGAGGAACCTCCACAACAGAGTGCAGAACTCTGACTATGAGAATGCTAATCGCTCTGCTGATGTAGACGTGGAGCTCATGGCCTTCCAGTCCATTATTGGAGATGATTACAAAGATGGAAACAGTGCCAACGCCATGGAGAGCTGGGGGGACGGGAGCCGCTGCCTCAAACTGAAAGGCCAGATGAGATACATGCCTGAGTGGGAGTCCATTATCTTCCTGGGAACTCCTGTAATGGAGAGTCTGAGTGCCATGTTTAAGACTGGACTCTACATTAATGACCTCAGCATGCACGACTCCAGCAGAGATCTGGTGCTGGCAGGAACGCAGCAATCTGAGGAGCTTAAGAGAGCTCTAATACAGGAACAGAAGAAGTCCAGCAAGCTGGAGGAGAGCATGAAGATGCTGGACTATGAGATGAAGAAGACTGATGacctgttgtacaggatgatcCCCAAACCTGTCGCTAAGAGACTGCGCAAGGGAGAGCCAGCGGTCAACACGTGCGAGGTGTTCCCAGATGTGACTATTCTGTTCAGCGATGTGGTGGGCTTTACTCGAATCTGCAGCCACATCACCCCCATGCAGGTGGTGTCCATGCTCAACACCATGTACACACTCTTCGACACACTCAGTGAGAAGCACAGAGTCTTTAAGGTTGAGACTATTGGAGACGCCTACATGGTTGTAGCTGGAGCTCCAGAGAAGACTAAGTACCACGCCCATAATATCTGTGACATGGCGTTGGACATGGTGCGCTCCATCGATCACCTTAAAGACCCGTCTAATGGCAACAACATACAGATCAGAGTGGGCATTCACTCTGGAATGGTCGTGGCTGGGGTCGTAGGTCACAAAATGCCTCGTTATGGTCTGCACGGAGATACGGTCCACACGGCATCTGCCATGGAGAGCAATGGAAAGGAGATGCACATTCAGCTCAGTAGCGCCACCTATGAACATCTGAAGGGCAGCCACTTCATTTTCGAGAGACGTGGAACCATAACCATAAAGGGTAACGTGGAGATTGAGACGTACTGGCTGAAGGGAAAGAGGGATAAAGATGGAAACGCTCAGGCAGCCTGCCCTCAGTTTGAGGCTCAAACCATCAGCAAAGCTGCAGCATCTCCCCCAGAGCCCCCCATCGACGAGGAAGGACTGGTGTTCCCCTCCGTAGTaggtgaggatgaggatgatgtGAAGTCTATCCGCTCTCACCGCATCAAGATGGAAACTTCTGGCAACTCTCTAGAGGAGTCCATGGAGGAGGGCAGAGTGGAGGAGATGTCAGTTAATAAGTCTCATTATAAAGATGCCTCACAGGACCCTGGTCTACAGGACTCTCATATTGAGCTGGATTCTCCAGAGTTTGATGGCCGGGATTCTATTATGGAGTCTCCAGAAGGATCCTGTGACTCTCGCTGCTCAGAGAAAAGCACCATGTGCTCCATATCCTGAAGCAGACTCCTATAGAGACGTTCATCTCGTACTGACACTGGCTTTAGCCTGGATGTTCCGCAGTCTTCACACAGATTATTGTGTTTATAGAGTAAATGCACTTAGAACTGGATTACACACATTTGCAGTTGGCTCCTCTCATCTACCATTTAGTGTAATCATTAGAAgctcctttatttttaagagtataCTGAATTATCCATTCTGTAGATagccacaatattaaaaaagaatttTTACGTGTAATGTATTGAAAGGGatgttatattgttattaatgtcagtttttcattttgttacatttattatttttgtgatatAGAGTTTAAGAGTTAAATTGTGTGTGacttaaatagttaaattatctaaaattgtaaaattagcATTATATACTATATCAATTGCAAAACAGCTGTTTCATTAAAAACTCTTGCATCTTTAAAACAGCTGCTTTTCAGGATAatagaaaaaaagttaatataagattttattccaggtcattttagaacatttatacTGGAATTTTGAATAAATGTTAAGAACACACAGAtttatataaaagtgaaatGCAGCACAAATGGAGATACATTTTGTGTCACAGTGATAATATGTGAAGTTTCTAAAGTTTCTAAAGTGAGCTCTGAAACCTTAGTTAATTAACGATTTGTAGTGTGATTATCCACAATGAGGGTCAATTACTCATTTATTTCTGCACCAGCCACCTTTTAGAATAACGTTTTAGAATTGTTTAGAAGATatgagaaaattaagtttccttaatatactataaaaaacacattttggccTTATTTTGGTTTTATATCTTACTCTGtattctttcttttatattaAGTTACTTGTTACACATTTTGCATGCTAAACTTGATTTgctaatctgatttttttttcaattatctaaattataaaacaaactatGGTCTTAGAGAATGGTTTACCtttattaaatgcattaaactccaTATAGAATATCAACtgatttaaacagattaaaaatgtcattatttGGTTGTAATGTACTTGAGAGTTTGGGCTGCATTTTGAAATAAAGCAATGACCTTCAAAAGAATCTTA

Function


GO: NA

KEGG:

id description
K01769 E4.6.1.2; guanylate cyclase, other

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU96648 lncRNA upstream 195701 6345234 ~ 6345715 (+) True G71628
TU96624 lncRNA upstream 383998 6153881 ~ 6157418 (+) True G71613
TU96622 lncRNA upstream 454429 6086574 ~ 6086987 (+) True G71611
TU96619 lncRNA upstream 504757 6032185 ~ 6036659 (+) True G71608
TU96550 lncRNA upstream 527034 6012222 ~ 6014382 (+) True G71566
TU96785 lncRNA downstream 79931 6639666 ~ 6661997 (+) True LOC111193077
TU96786 lncRNA downstream 96825 6656560 ~ 6661997 (+) False LOC111193077
XR_002650233.1 lncRNA downstream 96945 6656680 ~ 6662003 (+) False LOC111193077
TU96826 lncRNA downstream 307313 6867048 ~ 6868404 (+) True G71747
TU96876 lncRNA downstream 312413 6872148 ~ 6872364 (+) True G71787
XM_022672024.1 mRNA upstream 20945 6509961 ~ 6520471 (+) True LOC103042719
XM_022672021.1 mRNA upstream 32398 6472178 ~ 6509018 (+) False LOC103043030
XM_022672023.1 mRNA upstream 32398 6482021 ~ 6509018 (+) False LOC103043030
XM_022672019.1 mRNA upstream 32398 6487054 ~ 6509018 (+) False LOC103043030
XM_022672020.1 mRNA upstream 32398 6487253 ~ 6509018 (+) True LOC103043030
XM_022672027.1 mRNA downstream 45569 6605304 ~ 6633875 (+) False LOC103026234
XM_022672028.1 mRNA downstream 48605 6608340 ~ 6633875 (+) True LOC103026234
XM_022672030.1 mRNA downstream 118861 6678596 ~ 6719028 (+) True LOC103042411
XM_007253581.3 mRNA downstream 373655 6933390 ~ 6940362 (+) True bnip1
XM_007253575.3 mRNA downstream 579301 7139036 ~ 7173548 (+) True LOC103023840
TU96736 other upstream 2622 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 503668 6037676 ~ 6037748 (+) True trnaa-agc_15
trnaa-agc_14 other upstream 504542 6036802 ~ 6036874 (+) True trnaa-agc_14
TU96351 other upstream 1035778 5499908 ~ 5505638 (+) True G71414
LOC111193046 other upstream 1561394 4979467 ~ 4980022 (+) True LOC111193046
TU96877 other downstream 321852 6881587 ~ 6885541 (+) True G71788
TU97487 other downstream 2583164 9142899 ~ 9149419 (+) True G72281
TU97933 other downstream 3518844 10078579 ~ 10082140 (+) True G72621
trnar-ucg_4 other downstream 6043617 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 6311749 12871484 ~ 12897931 (+) False LOC103043719

Expression Profile