RNA id: XM_007253592.3


Basic Information

Item Value
RNA id XM_007253592.3
length 5456
RNA type mRNA
GC content 0.51
exon number 4
gene id LOC103028894
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 6374549 ~ 6462450 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTAAGCCGATAGGCTGCTGTCAGAGAGTGATTGGCTGTGAGGACCCGAGCAGCTGCACGAATGCACTCCAGTCAGGAGAGGtacggagggagggaggaaagtgagagagtaagagagagagtcagtgagagagagagagagagagagagaaagagagagactcaaAGAAAAGCAGGCTCCATACAGCAGTGGTTTGCCTGCCCCCCATGCCCTGTATCCACGTTCTGTGGACGGATCTCTTTAATTGCATTCCGGAGGAACTTTCTGTACAGCAGCTGCTTCTAAGACTGAAGGGGAACCAGCGGGAACTGTGGGCTTGTGGACAACCCAGTGTGGAGGAAGTGCAAGGAAGAAGGGGGTCTAGAGAAAGGAACAAAAGAGCGATGGGAAAGGCAAGAGGAGTGAGCTTGTCCCATTTTTTTCAAGTTCCAACTAGGAATTAgctgttttttgctgttcaTTCGTTCTGTGAACAGAACAGTGGCTAGCAGCTGCACACTGGCAGGCTATGCATGTGTGTGGGTGTCTGTGTGTAAATAAGGTGCTGAGCTGCTATAGGCCGAGCAACAAGCCAGCCAGGAGTAGGACCCTGAAGGTACAGAAGCTTTACCTGACTGGATCGACAAGTCTGACACCAGGCAGCTTTTCTGCAGGCATCTCTGACTTACATTAGAAAAGAGTGTGACAGGCAGAAGTGAGGATGTTTGCATGTTTCGGCACAAGAAAGAGTGCACGCTGCGAGTGCTGAACTGAACCAGACGACAGAGCCTGGAGAAAGAGAAGACGACTACCTGACAAACAAGGGTGTGCAATGCTTTGGAGCTTTCGTCCGGCTGTGACTTGAGTCCTGTCCGGCTGAGCACGCGCAAAAACACATTTGCACGTACCGAGCAGTGTTTACCTTTTTGTAACTTGCACTTTGGATCATGTTGGGGATGTGCCAGGTCTTGCCTGCAAGAATGCAATGTGCTCGAATGGTATAGGGTACAAGGGAAGAACTGTAGTGCGCACTCTTGGATGGGATTTTGGGTAGTACAatatattttgctatatttaCATACACATATAAGGTTGACCCTCTTATCTCAAGCAGTTTAAAACAGCAAGTCAGTGTAACTTCATAGTCTTTAGCCAATTATTCCCATTGGGTTTCTTGCCAGGACAAGGTTTCTAACCTTGGAGCTATTTTGATCCTTTTGAtacctgtttttattttgcactgTTTCTTTCTGCATGGCTCAGGGAACCTCCATTTTGAAGACAAAGAACAACTGGCATAGACCTCCTCGCTAGCACCGAAGCCTTTTTTCAAACTTCAGTTTGTTTTCTGGGGCATTCTTTTGTGTGCAGAGCAAGTGGAGCGTAGCTCCGGTGAATTGAGCTATtgttggaaagctgagttctcTCACGCTGCAAAACCCTAACTCAGGCCCCCCTCTTGCACCTCTTGCACCCCCCAAACTAAAGCAAGACCACCCCTTCCCGCCTTCCCCTCCTTTGCTGGTCCCTTCATCAGTCCTTTCCGATCCTCCTACGcacctcttctcctcctctccacATGCTGGAGAGGCCTGAGTGTGTggaagagtgtgtatgtgtgtgcatgcctCTTCTGCACACATGAGGCTGGAAACCCAAAGCCTGGATTACAAATCTAGACGTATCGCTTATCAGGACACATCTCCAAGCAACAAATCCAAGCAACTGTGCAGAAGTGCATTGTTCTTTTCAAATACTAAGGCAGCCTAGCATCTGCCGGTGGACTGATTGCGAgcattgttgtgtgtgtgtgtgtgtgtgtgtttgagtgtgtgtgttgtgtgtaggcTGCCTGTTTGAATATCCCTGCATGCGGGATCATCAGAGGGCCAGAAGGAAAGAAAAGCCTGGAAAGATAAAGCAGGGCTTGTGCAGGGTCTTGCCATGCAGGGAGTGTAGGTCTGCAGCATTAGGCAGTCGGTGGGGCGGTGGGTGACCGCTCTGTCCCGGCTTAGCCATGAAGAAAACGCGCAGCACCACCTTGCGCCGGGCCTGGCCAAGCTCAGACTTCTCAGACCGGGCCTCGGAACGCACCCGCTCTCGCAGCGAGAAGGACTACCGGCTCCATAAGCACTACCCCAAGCACTTCATCTCCCACTCTGTCTCCCACTCTCCCAGGATATACATGCCAGCAGGTGATGTGTCGCCTATCAGCATGTCTCCTATCAGTCAGTCCCAGTTCATTCCACTGGGAGAGATCCTGTGCCTGGCCATCTCGGCCATGAACTCTGCCCGCAAGACGGTCACACAGGAGACACTCATCGAGCACCTGGCAACATGCTTCCCAGGTGTGCCCACTCCAAGCCTGGAGATCTTGCGCCATACCCTCAACATGCTCGTCCGGGAACGTAAGATCTACCCGACTCCAGAGGGTTATTTCATCGTCACCCCGCAGACCTACTTCATCACACCTTCCCTTATTCGAACCAACAGCAAGTGGTACCACCTGGATGAGAGGATCCCGGCGGCCATGCAACAGCCGTGCTCTTCTCCTCCCTCAGGCACTGTTACACCCTCTGCTTCAGGCTGCGTCAGGGAGCGGCAGCACCACAAGAACCACGCCGAGCCTTACAGCGACAGTTACCGGGAAGACCTGCCcagcacacacacctccacGCTACAGAGGAGGTCCAAGGAACACAAGGAGGCACCATACCCAGTGTCTCCACCTCCTCAGCAATCCTCTGAGAAGAGCAAAAGCGCATTGAGCTTTGCCTTCAAAACGGATGGCAGCAGCAAGCAAAGGGATGGAGGCAGCAGTACCGCAGGCAGTGAGAAGCAGTCTAAGAAGTTCGGCCTGAAACTCTTTAGGTTAAGCTTCAAAaaggacaaaacaaaacacctgGCCACGTTTTCAGCCCAGTTTCCACCTGAGGAGTGGCCTCTGCGGGACGAGGAGACACCCAGTGCCGTTCCTCGGGACGTGGAGATGGAGATAATCCGGCGCATAAACCCGGATCTAACGGTGGAGAACCTGGCACGGCATACAGCTGTAATGAAGCGCCTGGAAGAAGAGAAGGCCCAAAGGAACAAAGCTAACGCATCGGCGCAACAGAATGCACGTGGAAAGCGTGGTCGGGGCCACCGCAAGGTTCAGCAAAGCAAGCAGTCACGCAGTCACAGCAAGACGCGTGCATCCAGAGGGGACCCTTCTGAGGGTTCCAACCTGGATATATCCTACGACCGGGACTACAAGTTCTATAGCTCTTCGCTGGTGCGGTCGCCAAGGGAGACTATGATGTCCATGGAGCGAAACAGGGGAAAGTACATGGTACATAGCAACCCGAACATTGTGGAGTCGCATTTCACTACAGCGCCTGAATGGGACGTGTCAGGTGAGCTGGCCAAGAGGAGGACAGAGATGCCTTTTCCAGAACCGTCCCGGGCACAGTCGCATTCAAAGGTCCACCGCAGCCATAGCCACACCCAAGAAAGGAAGTCTCGAAACGAGAGGTCAGACAAGGCCAAAGAGAGGTCGCGCTCAATGGACAACTCCAAAGGTCCCCTGGGGGGTCCCTACCTGGGCACCCCTGAGGACTTTGAGTGCAGTCCTGACGACAGGAGTCGGTACTACACTGACGACGGAACTTTGAGGGCGTCCACGCAAAAGAGCCACTACTCCCGCACTATGCTCTCTGCTGCTAGGTTAAATACTGACGTTTGCGTGCCTGATATTGGGAGGGGGACCCCCGAGGATGCCATGCACTGTAGGCCCCTGGAAAAGAGCAAAAGTAAAGACAGCTTGCCGGCCTACAATGACCTTAAGTCCTGCTCTCCCAAAACGCTTGTGGATGACTATTACCAACGCAGTGCATCGGGTGAGGCCTCTTTCTCGGCTCCCTCCCCTCTTACGAAATCCAGCCACGATTTTGCAGACAGCATCTGGAAGGGAATTCCTTCAGATCGACCCGCTCCGCTTCTGACCTCACCCCATCTTGGGGAATACAAGGACGATTCCTCGATGGGACAAAATAGTATAACTTTATCGGTGCCTAACCAGACACCCGAGCCTTTGCCCAATGGACGCTTGATGCACCAACACAACCCAGACTCAGGTGACTTGGACAAAATTGGGGAGGTTTACAGCCAGGAGTCTTTGTTCAAACCTTTAGACTATGTGGAGAGCAGCTTCTCCAGGCCTGGTACGATGCGCAAGTCTCCGCACACCAAGTCAGCAGAGGTACTGGAGACCCAGGAACACTTTGATGAACCTCTCCCGCTGTCCTCCTTGCCACCGACCTCGGGGCAGGAGCAGGCCTCGTGTGCCGAAACCACCTTCGACTACTACAACGTGTCAGACGATGATTCTGAGAGTGCCGGTCATAAGAACAAAGTAGAAGAAAAGGGTCGGGAAGGTGGTGGGACGATGCAGTGGCTTCTCGAGCGCGAGAAGGAGCGAGATCTCCAGCGCAAGTTTGAAAAGAACCTCACGTTCCTCAGCCCCAAAGAGGGCGAGAGCAACAATAGCCAGAAGTCGGCCCACTCCACACGCCTCGACAGCATGGACTCCAGCAGTGTGACTGTGGACAGTGGATTTAATTCCCCACGCACTCGAGAGAGCCTCGCCTCCAACACTTCGAGCAACGTAGAGAACAGCCGGCGGCAGAACATGGCTCTGAGTCCCGGTCACATCGGCACCAAGAGGCCGCCGCCGCCCTACCATGCACCCACCTTCCGCTCCATCCCCGAGCCACCTGCCGCCCGCCCCGAGAAACAAGCCTCCATCACCAGCGTGTAGCAGGGGATGATCAGAGGAACAGGGGAGAGGAGAAGGCCTTCTCGTTAATGATAGTTAAAGCTAAAAATCAAATTTACTCAGATTTTCTCCTTACTATAAAAGTCTGTTAGCCGCAATGAGTTTTCTACAAGATCTTACATCTCCCAggtcatttctttgtttttgtgctGGGCATATGAGAAAAATGTATCTGCTGAGAGATTATCACCACCAGTTAACATTGTACAAACACTTCTCAAGTCTCAAATTCCACACAAACTACCTTAAAGCCTGTGCTGTTGctacgctttcctccaaacatgcTATGAtcctactctgcaatgctgctgacttcacactcctggtgtgttggggcattactagtgatagggggagtcctaatgagtgggttggataattggccttGCATATTGGGAAGAAAATGATTTACTAAAAgatctttgtttttagtttaaagtaaaaagtaGCTTTGGAAATTGTACAACTTTTTCAGTTTTGGAACAGTTGTGATTGTGATTGACAAAAACTTAATCCTATGTAGGACTTTGTTTTCAAAGCAACATGGATTTAAGTCCTATTCAGACGAGTTTCGTTTCTCAAGGGAtcctgggtaattttctctttcttggagggtcttctgtgattttattcccgttcGGAACGaccatgtctgtgtttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96648 lncRNA upstream 61739 6345234 ~ 6345715 (+) True G71628
TU96624 lncRNA upstream 250036 6153881 ~ 6157418 (+) True G71613
TU96622 lncRNA upstream 320467 6086574 ~ 6086987 (+) True G71611
TU96619 lncRNA upstream 370795 6032185 ~ 6036659 (+) True G71608
TU96550 lncRNA upstream 393072 6012222 ~ 6014382 (+) True G71566
TU96785 lncRNA downstream 177216 6639666 ~ 6661997 (+) True LOC111193077
TU96786 lncRNA downstream 194110 6656560 ~ 6661997 (+) False LOC111193077
XR_002650233.1 lncRNA downstream 194230 6656680 ~ 6662003 (+) False LOC111193077
TU96826 lncRNA downstream 404598 6867048 ~ 6868404 (+) True G71747
TU96876 lncRNA downstream 409698 6872148 ~ 6872364 (+) True G71787
XM_007253596.3 mRNA upstream 35091 6353639 ~ 6372363 (+) True LOC103029834
XM_007253595.3 mRNA upstream 35091 6353642 ~ 6372363 (+) False LOC103029834
XM_022672014.1 mRNA upstream 62756 6318320 ~ 6344698 (+) True trappc11
XM_022672015.1 mRNA upstream 62756 6318330 ~ 6344698 (+) False trappc11
XM_007253600.3 mRNA upstream 116070 6272216 ~ 6291384 (+) True LOC103031423
XM_022672021.1 mRNA downstream 9728 6472178 ~ 6509018 (+) False LOC103043030
XM_022672023.1 mRNA downstream 19571 6482021 ~ 6509018 (+) False LOC103043030
XM_022672019.1 mRNA downstream 24604 6487054 ~ 6509018 (+) False LOC103043030
XM_022672020.1 mRNA downstream 24803 6487253 ~ 6509018 (+) True LOC103043030
XM_022672024.1 mRNA downstream 47511 6509961 ~ 6520471 (+) True LOC103042719
trnaa-agc_15 other upstream 369706 6037676 ~ 6037748 (+) True trnaa-agc_15
trnaa-agc_14 other upstream 370580 6036802 ~ 6036874 (+) True trnaa-agc_14
TU96351 other upstream 901816 5499908 ~ 5505638 (+) True G71414
LOC111193046 other upstream 1427432 4979467 ~ 4980022 (+) True LOC111193046
TU96122 other upstream 1439547 4963702 ~ 4967907 (+) True G71249
TU96736 other downstream 63191 6525641 ~ 6538794 (+) True G71682
TU96877 other downstream 419137 6881587 ~ 6885541 (+) True G71788
TU97487 other downstream 2680449 9142899 ~ 9149419 (+) True G72281
TU97933 other downstream 3616129 10078579 ~ 10082140 (+) True G72621
trnar-ucg_4 other downstream 6140902 12603352 ~ 12603424 (+) True trnar-ucg_4

Expression Profile