RNA id: XM_007253595.3


Basic Information

Item Value
RNA id XM_007253595.3
length 1904
RNA type mRNA
GC content 0.53
exon number 10
gene id LOC103029834
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 6353639 ~ 6372363 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGCGCACAGCCTGCCTCTGTTATCATTTCCCCATCCCAGGATGGGGATTAGCAGGTGACAGCAGCTATTCAGAAACCGCACTGCCATCAGCATCATCTCTGCTCTCTAATCACCCCTCAGTCTGCCTGCAGACCGCCCGACACGCAGGATGTACTCGCTGGACTACGACGAGGTGACCTCCTTCCTGGGGGACTGGGGTCCGTTTCAGGTGACTATCTTCATCCTGCTCAGCCTCAGCACCGTGCCCAACGGATACACCGGCATGGCCATGGTGTTCCTCGCAGACACACCCAGCTACCGGTGTAGAACCTCCCACTGGAACGGGAGCGCTGCCAGCCTGGAGCACACCTGGGGAACCTGCTCTCAGGTGCCAGCCCTGAATGGCAGCAGCAACGGCACAGGGCTGTGTGTGGACGGCTGGGAGTACAGCACTGAACGCTATGAGTCTACTATAGTCACTGAGTGGGACCTGGTGTGCGAAAATTCCTGGAAGGTGCCTTTCAGTCTGTCCATCTTCTTCCTGGGCGTGCTGAGTGGATCCTTCGTGTCGGGAGAGCTGTCTGACAGGTTCGGACGTAAGGTGGTTCTATTTGCCACTATGGCCATCCAGACCCTGTCCAGTTTGATCCAGGTGACCTCCGTTAGCTGGGAgatgttctgtgtgtttttcttcctCACTGGCATCGGGCAGATCTCCAACTACATGGCAGCCTTTGTCCTAGGCTGTGAACTGCTGGGGAAGAATTTGCGTGTGGTTTATTCAGTTCTGGGCACCTGTGTGTTTTATGCACTGGGCTATGCCCTCCTCCCCCTCTGTGCTTATTTGTTAAGGAGCTGGAGGCTGCTGCTGACTGTCCTCTCTCTGCCTGGCCTACTCTACATACCCCTCTGGTGGTTTATTCCAGAGTCTCCACGCTGGCTGCTGGCTAAAGGCCGGGTCCAAGAAGCTGAGGACATCATTAGAGCAGCAGCCAGGAGAAATGGCATCACTCCTCCTGAGGTCATCTTCAAGGGTTCGGACTTTCTGCTCTCTGAGAAGAGTCGGGCCAAAAACTCTGATGTCTCCTACACATACATGGACCTAATCCGGACCCCAAAGATGAGGCACATAACTCTGCTCAACGGTGTTGTATGGtttatcatcaccatcactTACTTCGGCTTGTCTCTGAGCACCCCTAACATGAATGGAGACCCGTATCTGAACTGCCTGCTCTCTGCTCTGATGGAGATCACTGCTTATGTTCTGGCCTGGattctgctgaagctgctgcccAGGAGAGCGCTCATCACTGGCCCGCTGCTTTCCGCTGGCCTGGTTCTGCTGCTAATCCATGTTGTACCTCCAGatTACAGTGGGGTGACTGTGGCTCTGGCTATGGGGGCCAAGCTGGGGGTCACTGCAGCGTTCTCCGTGCTCTATATCTCAGCGGTGGAGCAGTTCCCCACCGTGGTGCGGGGCATGGGGATGGGCGTCTGCTCAATGTGCTCAAAAACCGGCAGCACGCTCGCTCCTTTCTTCCCCTACTTCGGTCACTATGATCGGATCCTGCCCTACATTCTGATGGGGGCGCTGACCGTGTTAGCTGGGCTGCTGAGCATTCTGATGCCAGAAACTCGAGGCTCGCCCCTGCCTGAGGACCTCTCGCAAGTGCAGACTCTTAACTGGTGCTGTGGCTGCTGTAGACCAGCATGTTCAAGAAGAAGCTGTAAGACTGAGAAGGCACACAAGCTTCCGCCAGCTGTGTGATTCCATGTACACTACATACCTCATACGTAGATAGTATAAAACTTGACTTTGGTACACTGAAAAAAGCAATACATTTAGATTGACATTCAAATGTGTGAATCATTATATGGTCTTATATTCATTATAGAAGTCTTAAATAGACCATATTAAGTct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96648 lncRNA upstream 7927 6345234 ~ 6345715 (+) True G71628
TU96624 lncRNA upstream 196224 6153881 ~ 6157418 (+) True G71613
TU96622 lncRNA upstream 266655 6086574 ~ 6086987 (+) True G71611
TU96619 lncRNA upstream 316983 6032185 ~ 6036659 (+) True G71608
TU96550 lncRNA upstream 339260 6012222 ~ 6014382 (+) True G71566
TU96785 lncRNA downstream 267303 6639666 ~ 6661997 (+) True LOC111193077
TU96786 lncRNA downstream 284197 6656560 ~ 6661997 (+) False LOC111193077
XR_002650233.1 lncRNA downstream 284317 6656680 ~ 6662003 (+) False LOC111193077
TU96826 lncRNA downstream 494685 6867048 ~ 6868404 (+) True G71747
TU96876 lncRNA downstream 499785 6872148 ~ 6872364 (+) True G71787
XM_022672014.1 mRNA upstream 8944 6318320 ~ 6344698 (+) True trappc11
XM_022672015.1 mRNA upstream 8944 6318330 ~ 6344698 (+) False trappc11
XM_007253600.3 mRNA upstream 62258 6272216 ~ 6291384 (+) True LOC103031423
XM_007253601.3 mRNA upstream 342241 6008561 ~ 6011401 (+) True LOC103031741
XM_022672012.1 mRNA upstream 365876 5962280 ~ 5987766 (+) True tmem173
XM_007253591.3 mRNA downstream 2186 6374549 ~ 6462450 (+) False LOC103028894
XM_022672017.1 mRNA downstream 2241 6374604 ~ 6462450 (+) False LOC103028894
XM_007253592.3 mRNA downstream 35091 6407454 ~ 6462450 (+) True LOC103028894
XM_022672018.1 mRNA downstream 57844 6430207 ~ 6462450 (+) False LOC103028894
XM_022672016.1 mRNA downstream 64196 6436559 ~ 6462450 (+) False LOC103028894
trnaa-agc_15 other upstream 315894 6037676 ~ 6037748 (+) True trnaa-agc_15
trnaa-agc_14 other upstream 316768 6036802 ~ 6036874 (+) True trnaa-agc_14
TU96351 other upstream 848004 5499908 ~ 5505638 (+) True G71414
LOC111193046 other upstream 1373620 4979467 ~ 4980022 (+) True LOC111193046
TU96122 other upstream 1385735 4963702 ~ 4967907 (+) True G71249
TU96736 other downstream 153278 6525641 ~ 6538794 (+) True G71682
TU96877 other downstream 509224 6881587 ~ 6885541 (+) True G71788
TU97487 other downstream 2770536 9142899 ~ 9149419 (+) True G72281
TU97933 other downstream 3706216 10078579 ~ 10082140 (+) True G72621
trnar-ucg_4 other downstream 6230989 12603352 ~ 12603424 (+) True trnar-ucg_4

Expression Profile