RNA id: XM_007253598.3


Basic Information

Item Value
RNA id XM_007253598.3
length 1777
RNA type mRNA
GC content 0.52
exon number 13
gene id hars
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 6293684 ~ 6315841 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGTGACGTTTTTTGTGAGGGACCGGTCCTGCGGGGAGCTGAGAGAGCAGCACCATGGCGGATAAAGCGCAGATTCAAGAAGCCATTAAAGTTCAGGGGGAGGTGGTGAGGAAACTGAAGAGCGATAAAGCGAGTAAAGATCAGATTGACGAGGAAGTTGCCAAACTGCTACAGCTGAAGGCACAGCTCGGAGGAGACGATGGCAAACACACATTTGTTCTCAAAACTGCCAAGGGGACCAGAGACTACAACCCTAAACAGATGGCCATCAGAGAGAAGGtcttcaacaccatcatcagcTGCTTTAAACGCCATGGTGCTGAAACCATCGACACCCCAGTCTTTGAGCTCAAGGAAACTCTGACGGGGAAGTATGGCGAGGACTCCAAACTCATCTATGATCTCAAGGACCAGGGAGGAGAGCTGCTATCTTTAAGATACGACTTAACTGTGCCCTTCGCCCGTTACCTGGCCATGAACAAAATCACAAACATCAAGCGCTACCACATCGCTAAAGTGTACCGCAGAGACAACCCTGCCATGACTCGGGGCCGCTACAGGGAGTTTTACCAGTGTGATTTCGACATTGCAGGTCAGTACGACCCGATGATCCCGGATGCAGAGTGTTTGAAAATCGTTTACGAGATCCTCAGTGAACTGGACCTGGGAGACTTCCACATTAAGGTGAATGACAGACGTATCCTGGATGGGATGTTTGCAGTGTGTGGAGTTCCAGATGACAAGTTCCGCACCATCTGTTCAACTGTGGACAAATTGGACAAGaTGCCGTGGGAGGAAGTGAAGAATGAGATGGTGAAGGAGAAAGGCCTGTCTGAGGAAGCGGCGGATCAGATTGGAGAGTACGTCAGCATGCAGGGTGGGATGGACCTGGCGGAGAGGCTGCTCCAGGACCCCAAGCTTTCCCAGAGCAAGCAGGCGTGCGCCGGACTCACGGACATGAAGCAGCTCTTTAGCTACCTGCAGCTCTTCCAGGTCACAGACAAGGTGGTGTTTGACCTGAGTCTGGCGCGTGGGTTAGATTACTACACTGGTGTGATCTACGAGGCCGTGCTGTGCCAGACGCTTCAGCCTCCGACCCCAGCTCCCGCAGAGCAGAACGGGGCAGTGTCCGGAGACGAGGCGGGGGTCAGCGTGGGCAGTGTGGCCGGCGGAGGCCGTTATGATGGTTTAGTGGGCATGTTTGACCCTAAGGGCAGGAAAGTGCCCTGTGTGGGGGTCAGCATCGGCATCGAGAGAATCTTCTCCATCATGGAGCAGAAGGCTGAGCTGTCTGCAGAGAAAGTGCgcaccacagaaacacaggtCCTGGTAGCCTCAGCACAGAAGAACCTTCTGGAAGAAAGACTCAAACTAACCGCTGAGCTTTGGAACGCAGGAATTAAGGCTGAAGTGTTGTATAAGAAGAACCCAAAGCTGCTGACTCAGCTGCAGCACTGTGAGGAGACGGGTATCCCTCTGGTGGCAATTTTGGGGGAGCAGGAGCTCAAAGATGGAGTCGTCAAACTGCGCAATGTGGCCACCCGAGATGAGGTGGATGTGTCGAGGGCAGAGCTGGTTGAAGAGATCAAGAAAAGGACATCAGAGTCTTAGATCTGTCTATTCTTCAGCAACTTCCCAGAATTCAACATTTTCAGACTTTCTCATTGCTTACAAGAGCCAGACATGGTATAACCTAGCCTTCGTTCCATTCTGTTACCTGCCTGTaccaaaataaacttaaattaaacacaTCAAATAAACGTGCTGTCCCTTCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96682 lncRNA downstream 2172 6272251 ~ 6291512 (-) True G71644
TU96681 lncRNA downstream 4686 6272251 ~ 6288998 (-) False G71644
TU96669 lncRNA downstream 115664 6153891 ~ 6178020 (-) True G71636
TU96623 lncRNA downstream 206573 6086839 ~ 6087111 (-) True G71612
TU96568 lncRNA downstream 325763 5954620 ~ 5967921 (-) True G71577
TU96690 lncRNA upstream 2397 6318229 ~ 6320682 (-) True G71646
TU96708 lncRNA upstream 33871 6349703 ~ 6350020 (-) True G71659
TU96717 lncRNA upstream 52924 6368756 ~ 6374213 (-) True G71665
TU96727 lncRNA upstream 139723 6455555 ~ 6459631 (-) True G71675
TU96758 lncRNA upstream 177799 6493631 ~ 6498298 (-) True G71697
XM_022672013.1 mRNA downstream 71831 6161655 ~ 6221853 (-) True LOC103043333
XM_022671905.1 mRNA downstream 256930 6012219 ~ 6036754 (-) True LOC103032061
XM_022672008.1 mRNA downstream 434314 5844641 ~ 5859370 (-) True LOC103035351
XM_007253616.3 mRNA downstream 451977 5830089 ~ 5841707 (-) False LOC103035656
XM_022672025.1 mRNA upstream 206225 6522057 ~ 6538782 (-) True LOC103036141
XM_022672026.1 mRNA upstream 206225 6522057 ~ 6538781 (-) False LOC103036141
XM_007253587.2 mRNA upstream 254984 6570816 ~ 6583742 (-) True LOC103027842
XM_007253585.3 mRNA upstream 269842 6585674 ~ 6593124 (-) True LOC103026932
XM_007253582.3 mRNA upstream 548192 6864024 ~ 6868262 (-) True LOC103025929
TU96529 other downstream 451997 5829621 ~ 5841687 (-) True LOC103035656
TU96400 other downstream 817309 5471666 ~ 5476375 (-) True G71458
trnaw-cca_42 other downstream 1369613 4924000 ~ 4924071 (-) True trnaw-cca_42
TU96095 other downstream 1409196 4882170 ~ 4884488 (-) True G71235
TU96020 other downstream 1880673 4411948 ~ 4413011 (-) True G71175
TU96859 other upstream 461407 6777239 ~ 6824756 (-) True G71771
TU96917 other upstream 741278 7057110 ~ 7057643 (-) True G71826
TU96981 other upstream 993943 7309775 ~ 7312926 (-) True G71862
TU97555 other upstream 2323706 8639538 ~ 8645601 (-) True G72336
TU97699 other upstream 2850046 9165878 ~ 9174309 (-) True G72449

Expression Profile