Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_007253600.3 |
| length | 1621 |
| RNA type | mRNA |
| GC content | 0.51 |
| exon number | 5 |
| gene id | LOC103031423 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_035904.1 |
| NCBI id | CM008307.1 |
| chromosome length | 27092187 |
| location | 6272216 ~ 6291384 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| species | mexican tetra (Astyanax mexicanus) |
| id | name | namespace |
|---|---|---|
| GO:2000145 | regulation of cell motility | biological_process |
| GO:0010628 | positive regulation of gene expression | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0007281 | germ cell development | biological_process |
| GO:0048255 | mRNA stabilization | biological_process |
| GO:0060965 | negative regulation of gene silencing by miRNA | biological_process |
| GO:0008354 | germ cell migration | biological_process |
| GO:0060047 | heart contraction | biological_process |
| GO:0043073 | germ cell nucleus | cellular_component |
| GO:0043186 | P granule | cellular_component |
| GO:0017091 | AU-rich element binding | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0003730 | mRNA 3'-UTR binding | molecular_function |
| id | description |
|---|---|
| K24981 | DND1; dead end 1 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU96624 | lncRNA | upstream | 114798 | 6153881 ~ 6157418 (+) | True | G71613 |
| TU96622 | lncRNA | upstream | 185229 | 6086574 ~ 6086987 (+) | True | G71611 |
| TU96619 | lncRNA | upstream | 235557 | 6032185 ~ 6036659 (+) | True | G71608 |
| TU96551 | lncRNA | upstream | 254113 | 5966554 ~ 6018103 (+) | True | G71567 |
| TU96550 | lncRNA | upstream | 257834 | 6012222 ~ 6014382 (+) | True | G71566 |
| TU96648 | lncRNA | downstream | 53850 | 6345234 ~ 6345715 (+) | True | G71628 |
| TU96785 | lncRNA | downstream | 348282 | 6639666 ~ 6661997 (+) | True | LOC111193077 |
| TU96786 | lncRNA | downstream | 365176 | 6656560 ~ 6661997 (+) | False | LOC111193077 |
| XR_002650233.1 | lncRNA | downstream | 365296 | 6656680 ~ 6662003 (+) | False | LOC111193077 |
| TU96826 | lncRNA | downstream | 575664 | 6867048 ~ 6868404 (+) | True | G71747 |
| XM_007253601.3 | mRNA | upstream | 260815 | 6008561 ~ 6011401 (+) | True | LOC103031741 |
| XM_022672012.1 | mRNA | upstream | 284450 | 5962280 ~ 5987766 (+) | True | tmem173 |
| XM_022672009.1 | mRNA | upstream | 315201 | 5871090 ~ 5957015 (+) | False | LOC103043949 |
| XM_022672011.1 | mRNA | upstream | 315201 | 5871251 ~ 5957015 (+) | True | LOC103043949 |
| XM_022672010.1 | mRNA | upstream | 315201 | 5872593 ~ 5957015 (+) | False | LOC103043949 |
| XM_022672014.1 | mRNA | downstream | 26936 | 6318320 ~ 6344698 (+) | True | trappc11 |
| XM_022672015.1 | mRNA | downstream | 26946 | 6318330 ~ 6344698 (+) | False | trappc11 |
| XM_007253596.3 | mRNA | downstream | 62255 | 6353639 ~ 6372363 (+) | True | LOC103029834 |
| XM_007253595.3 | mRNA | downstream | 62258 | 6353642 ~ 6372363 (+) | False | LOC103029834 |
| XM_007253591.3 | mRNA | downstream | 83165 | 6374549 ~ 6462450 (+) | False | LOC103028894 |
| trnaa-agc_15 | other | upstream | 234468 | 6037676 ~ 6037748 (+) | True | trnaa-agc_15 |
| trnaa-agc_14 | other | upstream | 235342 | 6036802 ~ 6036874 (+) | True | trnaa-agc_14 |
| TU96351 | other | upstream | 766578 | 5499908 ~ 5505638 (+) | True | G71414 |
| LOC111193046 | other | upstream | 1292194 | 4979467 ~ 4980022 (+) | True | LOC111193046 |
| TU96113 | other | upstream | 1292205 | 4956298 ~ 4980011 (+) | True | G71247 |
| TU96736 | other | downstream | 234257 | 6525641 ~ 6538794 (+) | True | G71682 |
| TU96877 | other | downstream | 590203 | 6881587 ~ 6885541 (+) | True | G71788 |
| TU97487 | other | downstream | 2851515 | 9142899 ~ 9149419 (+) | True | G72281 |
| TU97933 | other | downstream | 3787195 | 10078579 ~ 10082140 (+) | True | G72621 |
| trnar-ucg_4 | other | downstream | 6311968 | 12603352 ~ 12603424 (+) | True | trnar-ucg_4 |
