RNA id: XM_007253601.3


Basic Information

Item Value
RNA id XM_007253601.3
length 1655
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC103031741
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 6008561 ~ 6011401 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGTTTAAATAGAGCGCGAGCGGATCGGAGCGGCGCAGAACGCTGCTGGGCTTCTAGAACGCACATGGAACGATCACAGACAGATCAAACGGAGGAGTTTCGCGGGAAAATAGAGTCAGAATGGTCTATAGCCAGGCTTTGGTGCTCGGGTACGGCCTGTCGGTCGGAGCTGAGGAGGATAACTTAGCAGATCTGCTGAAGAAGTTCTTCAGGCTGGATAAGGAAGGCTGGGGAACCCGGAGTACACTAACTAAAGCCACCAGCTCATCCAGTCTTTCCTCTGAGAGTAGCTgggaggaggatgaggatgacATGGCCTGTCTGAAACTGGATTTGATCAAGCAAATTGAGAGCTGCTTGGTTTCTGCTAAGGCTGTAAGTCTGAGCTGCCGGGAGCTGCTTCTTCCGGCCGGGATGACCACACGGGTGGCTGGGGATCTGCTCCGGGCCTCTGGAGATGAGCCGTGCGGCCTGCGGGGCGCCGTCATCCACCTCTTCTTGGAAAACAAGAGCGGTGTGCAGAAACTGGGCACCATTACAGCCGACCAGAGCCTCACTCCAACCTTTGAGCTGTCTGTGGTGTTCAGGGAAGACCCTGACGGCTGGCCACCCCTCCGGCACCTGCTGGGGACTGAAGGAGCTGTGAGGCTAAGGGCCAAGTACAGGCTGATTAAGAGGAAGCTGTATTCCTCTGCTAGTCCGATTGTGATGGACTGTTGCTGATCTGGAGTCTACAAACGAGTTacaaaccactttttttttacatgttgtaTGATTTTGCACGTagctgtttagtttattaactATATATTAGGACTTCTGCTGATAGGAAGTCAAATCTAGTAACGGCTAAGAAAAAGgaaatgatttattttgactGATTTAGGAGGTAGGAAAATGGAGTTACATGCCTTTTTGCACATTTCTGCTGGGTTAATTTAATATATGTCCTATGTATAGACTACTGATGAGAACCTACACTACTATAGCGTACAACTTTAACACACCTGAACTAATGAACCTAACGGTTGCATTTCAGGGCTGCGTTTCCAAATCTAGGCTgcaatatatagaaataaaagcacacttttttttttaagcagatcACCACAAAGCCCTGTTAGTCTGTTCCTAATATGAGACTAATGGGCTACAGAGAAAAAGTCATCATATGACCTCAACTGCAACCAGTACAGATGTTTTGCTGTAGCCTGGGACAGTGCAATAGTTCAGACTCACCCAGGGCTTCAGAGGACAAATTTAGGAACCACTGCTACATAGAACCCAAGCTGAGAACCACTGGTAAAAGAATGATGAATGTAGGAATTGAATTTGTATCATATGTTTAAGCAAGGATATTTTACAATGCATTTTGCACATTGTTGTTTAAGTCAGTGTATTTAGTTGTCTTATTTATGATGGAAATGAATGTACTTTGTTGGCCAACACTACTGTATTACTTTGTTTACAGTTTGAAATGTTCACGtggagttgttgttgttgttgtttgtttatggaGACTGGAAGACatctgtatttaattatttaacatttgtGGGAATGTCAAAGTTGCGGAGGTAAGCTGGACTTGTCTCCAAATAACAATGTTTTCTACTTGTCAGTATTTTCTAAgcctaataaaaaatactaaaatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96537 lncRNA upstream 51542 5903400 ~ 5957019 (+) False LOC103043949
TU96473 lncRNA upstream 149197 5800403 ~ 5859364 (+) False G71518
TU96550 lncRNA downstream 821 6012222 ~ 6014382 (+) True G71566
TU96619 lncRNA downstream 20784 6032185 ~ 6036659 (+) True G71608
TU96622 lncRNA downstream 75173 6086574 ~ 6086987 (+) True G71611
TU96624 lncRNA downstream 142480 6153881 ~ 6157418 (+) True G71613
TU96648 lncRNA downstream 333833 6345234 ~ 6345715 (+) True G71628
XM_022672012.1 mRNA upstream 20795 5962280 ~ 5987766 (+) True tmem173
XM_022672009.1 mRNA upstream 51546 5871090 ~ 5957015 (+) False LOC103043949
XM_022672011.1 mRNA upstream 51546 5871251 ~ 5957015 (+) True LOC103043949
XM_022672010.1 mRNA upstream 51546 5872593 ~ 5957015 (+) False LOC103043949
XM_007253622.3 mRNA upstream 277246 5696919 ~ 5731315 (+) True LOC103037091
XM_007253600.3 mRNA downstream 260815 6272216 ~ 6291384 (+) True LOC103031423
XM_022672014.1 mRNA downstream 306919 6318320 ~ 6344698 (+) True trappc11
XM_022672015.1 mRNA downstream 306929 6318330 ~ 6344698 (+) False trappc11
XM_007253596.3 mRNA downstream 342238 6353639 ~ 6372363 (+) True LOC103029834
XM_007253595.3 mRNA downstream 342241 6353642 ~ 6372363 (+) False LOC103029834
TU96351 other upstream 502923 5499908 ~ 5505638 (+) True G71414
LOC111193046 other upstream 1028539 4979467 ~ 4980022 (+) True LOC111193046
TU96113 other upstream 1028550 4956298 ~ 4980011 (+) True G71247
trnaa-agc_14 other downstream 25401 6036802 ~ 6036874 (+) True trnaa-agc_14
trnaa-agc_15 other downstream 26275 6037676 ~ 6037748 (+) True trnaa-agc_15
TU96736 other downstream 514240 6525641 ~ 6538794 (+) True G71682
TU96877 other downstream 870186 6881587 ~ 6885541 (+) True G71788
TU97487 other downstream 3131498 9142899 ~ 9149419 (+) True G72281

Expression Profile