RNA id: XM_022672007.1


Basic Information

Item Value
RNA id XM_022672007.1
length 1946
RNA type mRNA
GC content 0.55
exon number 3
gene id LOC103036182
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 5770787 ~ 5800724 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTGCGTTGCGTTAAAAAAAACGCGTATTTTGGAGCCTTTAGACGTTATTTTTCTACGTTGTCGTGATGTTCACCACCTACACGCGACCACAGACAGAAACTTGTGTCTCTCGTGCGTGGTTTTACCTGCGTTTGGACGGCGCGCCGGAGTCCGAGCTCCTTTTGTCCTGCTCCGGCTCGGTCGGCTGTCTGGATCTCCACTCCTAACGGGGGGCTATGCTCCACGGTGCCTCGCTGGAGTGTCGGTGGGATTATTCGTGACTGCTGGgtcttaatGGTGGACAGCCCTGTAAAATGCCGGTGAGCACGGCGAGCTGTCGGCTATAGGTGAGCACTCCTGACTGCTGCAGCCTTCACCTCGGCAAGCATCGCTCTTCCCCCACGCACCAATCAGAGCGAGAACATTGCTGCCCTCTGCCTTTGCCCTTCACCCCtccctcccccctctctctccctccccctcGTGCTGTGGGCCATGTCTGGCAGTGGGGGGTCGATGGAGGGAAACCAAGCCAGAGAGGATGAGGACGCCAGGGACAGCTGCTGTGGTGATGAAGACTCGTCGCCTGTGGTCGAGAGGCGAAACCGGAGTGGCATCATCAGCGCCCCTCTCAGCAAGAGCCTCAAACACTCCCGGGCACTCTCGCAGTACATCGCGACCTGCTCGGCCGCTGCCGCCGTCGCCACTGCTAACGCTAACAGACTCGCCCAGAGCTCCCTAGTTTCCACGGGAGTCAAGGCCCACTCCGCAGCCGCCCAACACAGAGCCCAAGTGGGACTTACCAAACTAGACCGGGGGGCTCTGGTGTCCGGCCTGCTGGACTCTCCAAGCGGGCTGCATCTGGCCCAGGCCGCCGAGCTCTTACGACAGGCCAGCATGCTGCTGCCTGTCTCTGACTCTTCTGGTCTTAACGTGGGTGGGGACATGGAAGGCGTCTCGGCATCCGATTCGTTGGGGAGTGTGACGGACTTCCCGTTGCTGAGCAACGGTGGCGGAGTAGGAGGCGCCTTCCCCTTCCACCCAGGCCTCTTCATCATGACGCCGGCCGGAGTCTTCCTGGCTGACGGAGCGCTGTCCCAGGTGACAGGCGCGACAGAGCACCAGCAGAGCCACAATGAGATTTCGTCGGCCATCAGCGCCAACGGCAAGAAGAAGCGCAAGCGCTGCGGCCTGTGCCCACCCTGTCGGCGCAGGATCAACTGCGAGCAGTGCAGCAGCTGTCGCAACCGCAAGACCGGCCACCAGATCTGCAAGTTCAGGAAGTGTGAAGAGTTGAAGAAGAAGCCAGCTGGTGGTCTGGAGGTGATGCTGCCCACTGGAGCGCCTTTCCGCTGGTTCCAGTAGGACGCCGGACGGGCGAGTGGACTCTGCTCTTCGCTCGGAAATAACGGACTGCCAATCAACCGCAATGCCACCGCCCACTCGGACTGCCCTGCGGGCTCACAAACACTGGCCACAAATAacgaaacaaacaaacaaacaatctcTCTCCGAACGGCGAGAGAGGAGAAGGCACTATGTGAGAACGAAGCTGTTTCTTCTGAACCAAAAATAAACTGCCATGGCAGCATGTCATCGCTtagtttcattattattataattattattattattatttttcgtttgttcgtttgtttgtttgtctgtttgttctCTATGTTCCGTTGGGGAACACCTGACTTCTTATTTCGAGTCTTGTCCTTTATCGGACGCTTTGGGAACTCTCAACCGccaaacagaagaagaaaaaaatgtacaatcaTTTTCGTTTTTGcgtgttttgtgtttctgtttgtccACGTGTGGAGGAATGCTGTATTTGCGTTAGAGAATGTAAACTCGAGACTCTGTTTTAAAAGCTAGTTAATTAATCCAGAGCACTATTGTACAATTAGCACCAATGTTCTTACTGACTGCCtcagtatatatatttgatttggCTTTta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96453 lncRNA downstream 90677 5679805 ~ 5680110 (-) True G71501
TU96448 lncRNA downstream 91914 5642890 ~ 5678873 (-) True G71496
TU96437 lncRNA downstream 170835 5599714 ~ 5599952 (-) True G71488
TU96415 lncRNA downstream 242913 5527659 ~ 5527874 (-) True G71472
TU96407 lncRNA downstream 278846 5490363 ~ 5491941 (-) True G71464
TU96531 lncRNA upstream 70213 5866305 ~ 5866528 (-) True G71554
TU96568 lncRNA upstream 158528 5954620 ~ 5967921 (-) True G71577
TU96623 lncRNA upstream 290747 6086839 ~ 6087111 (-) True G71612
TU96669 lncRNA upstream 357799 6153891 ~ 6178020 (-) True G71636
TU96681 lncRNA upstream 476159 6272251 ~ 6288998 (-) False G71644
XM_022672001.1 mRNA downstream 174762 5531871 ~ 5596025 (-) True trpc3
XM_022672005.1 mRNA downstream 174784 5531871 ~ 5596003 (-) False trpc3
XM_022672004.1 mRNA downstream 174840 5531871 ~ 5595947 (-) False trpc3
XM_022672003.1 mRNA downstream 174840 5531871 ~ 5595947 (-) False trpc3
XM_022672002.1 mRNA downstream 184606 5531871 ~ 5586181 (-) False trpc3
XM_007253616.3 mRNA upstream 33997 5830089 ~ 5841707 (-) False LOC103035656
XM_007253617.3 mRNA upstream 33997 5830089 ~ 5841684 (-) False LOC103035656
XM_022672008.1 mRNA upstream 48549 5844641 ~ 5859370 (-) True LOC103035351
XM_022671905.1 mRNA upstream 216127 6012219 ~ 6036754 (-) True LOC103032061
XM_022672013.1 mRNA upstream 365563 6161655 ~ 6221853 (-) True LOC103043333
TU96400 other downstream 294412 5471666 ~ 5476375 (-) True G71458
trnaw-cca_42 other downstream 846716 4924000 ~ 4924071 (-) True trnaw-cca_42
TU96095 other downstream 886299 4882170 ~ 4884488 (-) True G71235
TU96020 other downstream 1357776 4411948 ~ 4413011 (-) True G71175
TU95798 other downstream 1963688 3769161 ~ 3807099 (-) False LOC103042226
TU96529 other upstream 33529 5829621 ~ 5841687 (-) True LOC103035656
TU96859 other upstream 981147 6777239 ~ 6824756 (-) True G71771
TU96917 other upstream 1261018 7057110 ~ 7057643 (-) True G71826
TU96981 other upstream 1513683 7309775 ~ 7312926 (-) True G71862
TU97555 other upstream 2843446 8639538 ~ 8645601 (-) True G72336

Expression Profile