RNA id: XM_007253630.3


Basic Information

Item Value
RNA id XM_007253630.3
length 1725
RNA type mRNA
GC content 0.49
exon number 10
gene id gabra6
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 5143765 ~ 5173256 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACACACTGAGAGTCACACACTGCAGGAAAACACAGCCTTACACTCGCGTTATGGAGTTCTGTCATTGAACGGCCGGGAGTGAAAACAATGgacaatattttaacattattatgttTGATTAGTATTAGCACTTATACGGGAAGCCAGAAGATCAGCTCAGAGAATATCACGCGCATTCTGGACCGACTTCTGGAGGGCTATGACAACCGGCTGCGTCCCGGATCAGGAGTGTCAGTAACTGAAGTGAAAACAGACATATTTGTCACCAGCTTTGGCCCGGTGTCAGATGTTGAAATGGAGTTCACTTTGGACATGTTCTTCCGTCAAATGTGGGTGGACAAGAGGTTGGCTTTCGAGGGTCCCATTGAGATCTTACGCCTGAACAACCGCATGCTGGACAAGATCTGGACGCCTGACACTTTTTTCCGCAACGCgaagaaatctctggcacacaACATGACCTCACCCAACAAGATGTTCCGCATCATGCAGAACGGCACCGTTTTCTACACCATGAGGCTGACCATCAGTGCAGAATGCCCAATGAAACTGATGGACTTCCCTATGGATGGACACATTTGTCCTCTCCGGTTTGGAAGCTATGCCTACACAAACCGTGAGATCATTTACACCTGGAGGAAGGGTCTGGAGGCGTCTGTGGACATCCCACCCGAGTCCTCTAATCTACTGCAGTATGATCTAACCGGACATACGCTGTCCAGTGAAACATTTAAGATCAGCACAGGCCATTATTCCGTCAAAGTTGTTCATTTTGTCCTCCAGAGGAAACTGGGATACCATTTGATCCAAACCTACATTCCCCTCATCATGGTGGTGGTGCTGTCACAAGTGGCCTTCTGGATCAACAAGGAGTCGGTCCCTGCTCGCACTGTTGCcgGAATCACCACAGTTCTGACCATGACCACCCTGAGCATCAGCGCCCGCTCCTCCCTGCCCAAGGTATCGTACGCCACGGCCATGGACTGGTTCATTGCGGTCTGCTTTGCGTTCGTAGCCTCTGCTCTGGTGGAGTTTGCTGCAGTTAACTACTTTTCTACTCTGGAGGCCAACAGAATGAGACGCAGAGTCTCCAGAGGATCCGTGTTGGAGTCCATTGCTGAGGGCAGCGATGATGAAGAAGACTCGGTGTCACAGACCAGTGTTGGAGGCCGGGTAAGAAAGAGGATGGGCTCCATCTCTGAACCCCCCAAAACCCGCCTACCCATCTTCCTCCAGCAGGGCTCGGCCGTACCCCAAAACATGTCACTGGCAGGGACCAGCCCCATTGACCAGTACTCCCGCATCCTCTTCCCACTGGCCTTTGCCATTTTCAACATCATCTACtggtacatttacctcagcaaggACACCATAGAGAAATCCAGGGAGATCGACTGAGTTTCTCAGGCACGCGGTTCAGCTCGGCAAGCTCATGCACTGCTGCAGAACAAGCATCTGCTCcttccttccctccctctctctctctttctctctctctttctctctctctctctctctctctcttaaattcAAACTCAGAATTCAATTCAGATTCAGTGAAGCAGTGTTGCCAAAACATTTGTTGATCGAAACAATCAGTCAGTTAATCACTTCAACTCTGTGAGCCTGAAAGGCTGGAAAAGATAGCCAACCATgtacataataatatatatttttaatatatttctctCAATAtgatacagtggtatgaaaaagtttgggctc

Function

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004890 GABA-A receptor activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function

KEGG:

id description
K05175 GABRA; gamma-aminobutyric acid receptor subunit alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96175 lncRNA upstream 6198 5133735 ~ 5137567 (+) True G71287
TU96138 lncRNA upstream 100007 5001091 ~ 5043758 (+) True G71260
TU96119 lncRNA upstream 137540 4958156 ~ 5006225 (+) True G71248
TU96132 lncRNA upstream 150586 4990852 ~ 4993179 (+) True G71256
TU96110 lncRNA upstream 174846 4963971 ~ 4968919 (+) True G71246
TU96186 lncRNA downstream 31960 5205216 ~ 5207077 (+) True G71294
TU96198 lncRNA downstream 122422 5295678 ~ 5298321 (+) True G71304
TU96333 lncRNA downstream 150413 5323669 ~ 5324887 (+) True G71397
TU96347 lncRNA downstream 235775 5409031 ~ 5410313 (+) True G71411
TU96348 lncRNA downstream 235775 5409031 ~ 5410023 (+) False G71411
XM_007253631.3 mRNA upstream 13208 5123954 ~ 5130557 (+) True ccng1
XM_007253633.2 mRNA upstream 25926 5091878 ~ 5117839 (+) True LOC103040455
XM_007253634.2 mRNA upstream 31750 5091881 ~ 5112015 (+) False LOC103040455
XM_022671993.1 mRNA upstream 61159 5068901 ~ 5082606 (+) True LOC103041177
XM_022671992.1 mRNA upstream 76258 5048506 ~ 5067507 (+) True cfap69
XM_022671996.1 mRNA downstream 9247 5182503 ~ 5311990 (+) False gabrb2
XM_022671995.1 mRNA downstream 9343 5182599 ~ 5313658 (+) True gabrb2
XM_022671997.1 mRNA downstream 166394 5339650 ~ 5408015 (+) True atp10b
XM_022671999.1 mRNA downstream 257433 5430689 ~ 5476431 (+) True atp7a
XM_007253628.3 mRNA downstream 307132 5480388 ~ 5485164 (+) True LOC103038898
LOC111193046 other upstream 163743 4979467 ~ 4980022 (+) True LOC111193046
TU96113 other upstream 163754 4956298 ~ 4980011 (+) True G71247
TU96114 other upstream 163754 4956298 ~ 4980011 (+) False G71247
TU96122 other upstream 175858 4963702 ~ 4967907 (+) True G71249
LOC111193076 other upstream 186739 4956279 ~ 4957026 (+) True LOC111193076
TU96351 other downstream 326652 5499908 ~ 5505638 (+) True G71414
trnaa-agc_14 other downstream 863546 6036802 ~ 6036874 (+) True trnaa-agc_14
trnaa-agc_15 other downstream 864420 6037676 ~ 6037748 (+) True trnaa-agc_15
TU96736 other downstream 1352385 6525641 ~ 6538794 (+) True G71682
TU96877 other downstream 1708331 6881587 ~ 6885541 (+) True G71788

Expression Profile