RNA id: XM_007253633.2


Basic Information

Item Value
RNA id XM_007253633.2
length 2181
RNA type mRNA
GC content 0.44
exon number 10
gene id LOC103040455
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 5091878 ~ 5117839 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttcatttttttttcaatatggtGTAGCTCTAGCCCTAAATCTCAGTGTCCTTCAAAGCGTATGCTTCattctaaaattaaacatttcacaccaaacactTTGAAGGAACTTTTCACATCTCATCATAATGTAATTGAATTGTgcatactttttaaatgttgttggaCTTCTCTTAAAGTGAGTTCAGAGTGCAGATCTCTTCAGTGTGAGGAAAAGTGGAGCTGCCAAGTTTGTGGAGGATGGCATGTAAACTGCCTGATCTGCATTCTAATTCAGAGGGTGGTGCCATCGAGCGGCTGCAGTGAGCGACACAGAGAGAGTTTCAGTAGCAGGACAGATAGAAACCTCCACCTCCCGTCACTGACAGCTGACTGTCCTGCATCAGAATGGCTGCACTGGACGTGGGCCTGCTCCCTACTGAAGAGAAGAGGACGCTGACCCTCTGTGGCCATGTTGGTTTTGACAGCCTTCCTGACCAGCTAGTGAGCAAATCAGTGTCCCAGGGCTTCTGCTTCAACATCCTCTGTGTAGGTGAAACAGGGATCGGTAAATCCACGCTGATGAACACGCTCTTCAACACAACCTTTGAGAACGAAGAGGCCAGCCACCACCAGAACACTGTGTATTTACGACCCAGGACCTACAACCTGCAGGAGAGCAATGTGGACCTCAAGCTGACCATAGTGGATACCGTGGGGTTCGGTGATCAGATCAATAAAGAGGAGAGCTACAAGCCCATACTGGACTACATTGATAACCAGTTTGAAAACTTCCTCCAAGAGGAGCTGAAAATTAAACGTTCGCTGCATAATTACCACGACACCAGGATTCACATCTGCCTGTACTTCATCTCCCCTACGGGCCATTCACTTAGGTCTCTCGATCTCGTCACCATGAAGAAGCTGGACAGTaagGTGAACCTTATTCCCCTGATCGCGAAGGCAGATACCATCTCCAAGTGTGAGCTTCACAAGTTTAAGATTAAAGTCATGAGTGAGCTGGTCAGTAACGGCGTTCAGATTTATCAATTTCCAACAGACGATGAAGCTGTGACGGAAATCAACTCCACTATGAATGCACATCTGCCGTTTGCTGTGGTGGGGAGCAGTGAGGAGGTTAAAGTTGGGAATAAGATGGTTCGAGCCAGACAGTTCCCGTGGGGAGTGGTGCAGGTGGAGAACGAGAGCCACTGTGATTTTGTAAAGCTGAGAGAGATGCTGCTTCGGGTGAATATGGAAGATCTGCGGGAGCAGACGCACGCACGCCATTATGAGCTGTACCGCCGCTGCAAGCTGGAGGAGATGGGCTTTAAAGACTCGAACACTGATGCACAGCCATTCAGTCTGCAGGATGTTTACGTGGCCAAGAGAAGGGAGTTTGTGGCTGAACTGCAGCGCAGCGAGGAGGACATGCGGCAGATGTTTGTCAATAAAGTGAAGGAGACGGAGGCGGagttaaaagagagagaaagagagcTGCACGAGCGTTTTGAGCAGCTGAAGCGTCTGCATCAGGAGGAGAAGCGTAGTCTGGAGCAGAAGCGGcgagagctggaggaggagatgAACTCGTTCAGCAGGAGGAAGGTGGCGGCGGAGGCGTTGCAGGCCTGCACACTGCAGAgctccatcacacacaccatcaAAAAGGAGAAAGACAAGAGAAACTTCTTTAGTCTTCCGTCAGCTCTCTCCTTCACCACAGAGAGGAATGTGAATTaggatctgaatctgaatcaggATTGTTGTGTGATGTGTAACTAACAGGCTGGTGTGGAGTCTGGTCTCATTCAATCGTTTTGacctttttttaatctattttaatctattattatttatttttttatgaattgtgatcttcttatttcatgttatgatatttttatttgcattgtttgttaGAATTGTAAACATTCAAATCTAAATATTTCAATTTTAACTTCAGTTGATTTATACacttatatttaacattattgcATTTTCTGCTTTTGTATTCGGTAGCCCCaggttttaatgtttgtgtcattttttctttgttgtaattttttataTGGACTTGTTTTAATTTCCCTGCTCTACTTTTGAATCTTATTTTTTAACTCACTACTATCAATCCCTTCTTCTAAATGTGAGGGTTTTCATCAATGTATtcagagtgtgaataaaaaaatggatttaataA

Function

GO: NA

KEGG:

id description
K16939 SEPT6_8_11; septin 6/8/11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96138 lncRNA upstream 48120 5001091 ~ 5043758 (+) True G71260
TU96119 lncRNA upstream 85653 4958156 ~ 5006225 (+) True G71248
TU96132 lncRNA upstream 98699 4990852 ~ 4993179 (+) True G71256
TU96110 lncRNA upstream 122959 4963971 ~ 4968919 (+) True G71246
TU96107 lncRNA upstream 149761 4941409 ~ 4942117 (+) True G71244
TU96175 lncRNA downstream 15896 5133735 ~ 5137567 (+) True G71287
TU96186 lncRNA downstream 87377 5205216 ~ 5207077 (+) True G71294
TU96198 lncRNA downstream 177839 5295678 ~ 5298321 (+) True G71304
TU96333 lncRNA downstream 205830 5323669 ~ 5324887 (+) True G71397
TU96347 lncRNA downstream 291192 5409031 ~ 5410313 (+) True G71411
XM_022671993.1 mRNA upstream 9272 5068901 ~ 5082606 (+) True LOC103041177
XM_022671992.1 mRNA upstream 24371 5048506 ~ 5067507 (+) True cfap69
XM_007239848.3 mRNA upstream 136989 4943206 ~ 4954889 (+) True dnajc8
XM_007239845.3 mRNA upstream 156813 4929177 ~ 4935065 (+) True hnrnpr
XM_007253631.3 mRNA downstream 6115 5123954 ~ 5130557 (+) True ccng1
XM_007253630.3 mRNA downstream 25926 5143765 ~ 5173256 (+) True gabra6
XM_022671996.1 mRNA downstream 64664 5182503 ~ 5311990 (+) False gabrb2
XM_022671995.1 mRNA downstream 64760 5182599 ~ 5313658 (+) True gabrb2
XM_022671997.1 mRNA downstream 221811 5339650 ~ 5408015 (+) True atp10b
LOC111193046 other upstream 111856 4979467 ~ 4980022 (+) True LOC111193046
TU96113 other upstream 111867 4956298 ~ 4980011 (+) True G71247
TU96114 other upstream 111867 4956298 ~ 4980011 (+) False G71247
TU96122 other upstream 123971 4963702 ~ 4967907 (+) True G71249
LOC111193076 other upstream 134852 4956279 ~ 4957026 (+) True LOC111193076
TU96351 other downstream 382069 5499908 ~ 5505638 (+) True G71414
trnaa-agc_14 other downstream 918963 6036802 ~ 6036874 (+) True trnaa-agc_14
trnaa-agc_15 other downstream 919837 6037676 ~ 6037748 (+) True trnaa-agc_15
TU96736 other downstream 1407802 6525641 ~ 6538794 (+) True G71682
TU96877 other downstream 1763748 6881587 ~ 6885541 (+) True G71788

Expression Profile