RNA id: XM_007253644.3


Basic Information

Item Value
RNA id XM_007253644.3
length 2142
RNA type mRNA
GC content 0.53
exon number 3
gene id LOC103044251
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 5491422 ~ 5494564 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tGAATTATCCCCGGTTTTCTGGGTTTTTCAGCGTCACGGCCGGCCGGGTCGGGTGTTAATTAGGGACcggtgtgtgagtgagagggCGGCGGAAGTGTATCCGGGGCTGATCTGAGCTCTGCGGTCAGTAAGCTGAAGTTAAAGTGTGCCGGTTTCTCCGCGATGGCTCCGCCGCCGTGTGTTCCGTTCCCCCGCTTCACCGCGCTGGTGCCGGTGGCGGTGGTCGTGCTGTGGGTGGTCGCGGGGTCGGGCCTGGCGCTCCTCGGTAACGGGGTGCAGCCGGACAGCCTGGCTCATCACGGGAACATCCTGAGCCCGCTGCTGAAAGCCCTGTCCGAGCAGGAGCCGTGGGGGGCCGCGGAGCCCCGGACCCGGCCCCGGCCCGACTCCCGGTACGTCCGTTTCATGAAGCGGCTCTACAAGCTCTCCTCCAGACCCGAGAGGAGCCACGAGACCGAGCAGCTCTACAACACCGTGCGCCTCATCACCCCCAGACAGGAGTGCCTGAGCCACAGCACAGaaTATTTCACACAGGACATCTCCTACAGCTTGGACCGCGTCCGAGCCCAGGAGCACCTACTCAAGTCTGTGCTACTCTACTCCGTCAACCATAACCTTGCAGCCTCCCTCGCCTCCATCTGCTACCTGCACGTGAAGGAGCACATGCCCTCAGACGACCGCGTCTGCCTACACCCCCACAGCTCCTCCCGCCTGGCCACGGCAGTCACCTTCCACGTCCGGTCGGAGAGAGCTGGTCGGCGCAAGTGGGCAGAGGTGGACGTGACCCCCTTCCTCCAACCGCTGATCCGGAGCCACAGGAAGGACCTCCACCTGCTCCTCAACCTCACCTGCCCAGAGCACGGGATCCACGGACGCCCTGGTAGAAGCCCCCTGGAGCTCTCGCACGTGGCACCATCGCTTCTGTTGTATCTCAACGATACCAGTGAGGTGGCCTATCGGAGGAGCTCTGCACACAGCAGGTTCGGAAGCTTCAGATCAAACCACTGGGATGCAAAGCCCCTCCGGCACGATCACCATTCCGGATCAGAGCAGCACACATGGAGGGATCGCAGGAGCACTCTGAACAGCACTCAGGAACCCAATACCAACCTGTCCAGCTACGAGTTCCCCACGGATGAATGCGACCTCTACGACGTCAGGGTGAGTTTCAGCCAGCTCAAACTGGACCACTGGATCATAGCACCCCACAAGTACAACCCCAGGTACTGCAAGGGGGTCTGCCCCAGGGCAGTGGGCTACATCTACGGCTCGCCCGTGCACACCATGGTGCAGAACATTATCTATGAAAAGCTGGACTCCTCCATCCCCAGACCTTCATGCGTTCCTTCAGAATACGACCCCTTGAGTGTTTTGACCATTGAGAACGATGGATCCATTGCCTACAAGGAATATGAGGAGATGATTGCTACTAAATGTACCTGCCGGTAAGGCTCAAATCTATCTGTAACAAGAGGTTTCGTAAAAAGAAAACGTTTGCACTTACCGTACAAATTTCAGGCGAGACGCTGAGATTGTTTTCTCACTGTTTCATTCACCATAGCCATTTAATCCATCCCgacagtgttagttgaatgacCTCGGTaatattttctcatttctctcaaAAAGTCACGTTTGTGTGTATAAAAAAGTTGAGCAGGTGACTAGATGAGAAAAAAGCTTTATGTTTAACGCGTATGAATACGATttaagttaattatttaatttatgttcttGGTGGTTGTGTCTCAGTTCTCCGCATGCTTGAACACAAATGGCAGAAGTTTTAAACAAATCTAGTTCTGGACCGATTATGAAAAGTGTAGTCCTGTTCTTCTTAATGGAACACTTTTACAGTCGTTTTTAATACCTGTGGATTGCAGCGGTTGTCGGAAGGGCAACCTCTCTCTTCATGATGTCCAGAAAGTAAGTTGCCCTAAACTAAGGACAACTTGATGAGCGAATGAAATGCTCGAAGGCATTTGATCATTGTGTGCCAAACGGTTTATAGCAGAATACatttaatgtgtgtatttatgtcaTTTGTCTGTGTGCCTTGTTCTGGTTGGCTCTGATTTCACACCAAAATATGATCTTTTGATagattcataaaaaaatgtgaaataaaaaaaaacaaagcaa

Function

GO: NA

KEGG:

id description
K22673 GDF9; growth differentiation factor 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96347 lncRNA upstream 81109 5409031 ~ 5410313 (+) True G71411
TU96348 lncRNA upstream 81399 5409031 ~ 5410023 (+) False G71411
TU96333 lncRNA upstream 166535 5323669 ~ 5324887 (+) True G71397
TU96198 lncRNA upstream 193101 5295678 ~ 5298321 (+) True G71304
TU96186 lncRNA upstream 284345 5205216 ~ 5207077 (+) True G71294
TU96416 lncRNA downstream 33432 5527996 ~ 5532969 (+) True G71473
TU96417 lncRNA downstream 33891 5528455 ~ 5532295 (+) True G71474
TU96438 lncRNA downstream 108556 5603120 ~ 5603321 (+) True G71489
TU96439 lncRNA downstream 113154 5607718 ~ 5607946 (+) True G71490
TU96445 lncRNA downstream 180237 5674801 ~ 5678827 (+) False LOC103037414
XM_007253628.3 mRNA upstream 6258 5480388 ~ 5485164 (+) True LOC103038898
XM_022671999.1 mRNA upstream 14991 5430689 ~ 5476431 (+) True atp7a
XM_022671997.1 mRNA upstream 83407 5339650 ~ 5408015 (+) True atp10b
XM_022671995.1 mRNA upstream 177764 5182599 ~ 5313658 (+) True gabrb2
XM_022671996.1 mRNA upstream 179432 5182503 ~ 5311990 (+) False gabrb2
XM_015606961.2 mRNA downstream 178154 5672718 ~ 5678874 (+) True LOC103037414
XM_015606960.2 mRNA downstream 178168 5672732 ~ 5678874 (+) False LOC103037414
XM_007253622.3 mRNA downstream 202355 5696919 ~ 5731315 (+) True LOC103037091
XM_022672009.1 mRNA downstream 376526 5871090 ~ 5957015 (+) False LOC103043949
XM_022672011.1 mRNA downstream 376687 5871251 ~ 5957015 (+) True LOC103043949
LOC111193046 other upstream 511400 4979467 ~ 4980022 (+) True LOC111193046
TU96113 other upstream 511411 4956298 ~ 4980011 (+) True G71247
TU96114 other upstream 511411 4956298 ~ 4980011 (+) False G71247
TU96122 other upstream 523515 4963702 ~ 4967907 (+) True G71249
LOC111193076 other upstream 534396 4956279 ~ 4957026 (+) True LOC111193076
TU96351 other downstream 5344 5499908 ~ 5505638 (+) True G71414
trnaa-agc_14 other downstream 542238 6036802 ~ 6036874 (+) True trnaa-agc_14
trnaa-agc_15 other downstream 543112 6037676 ~ 6037748 (+) True trnaa-agc_15
TU96736 other downstream 1031077 6525641 ~ 6538794 (+) True G71682
TU96877 other downstream 1387023 6881587 ~ 6885541 (+) True G71788

Expression Profile