RNA id: XM_022672036.1


Basic Information

Item Value
RNA id XM_022672036.1
length 3154
RNA type mRNA
GC content 0.47
exon number 18
gene id kif3a
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 7424683 ~ 7444873 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctagtactgtataatAATGTCTTGCCTCTAAAGCTATGAGAAATATGATGATGtgtgagggtggtggtgatcTTCTCCACTGAGGGCAGATTTCCATCCTCCAGCCTGGATCCTCCAATAACCGCTCTGCGCAGCCTCAGAGTATCCCGGGCTGACGGCACCGTTTGGGGATGGGCATCTGAGAATGGACGGGTAACGGCGGCGGATGACCTCAGACATATTGTTTACCAAGCGGGAATCCAGCGCTTTCTCTTCGgctgtttaaaaaacagcacAATAAGGAGCAAACATGCCGAGCAACAAGCTTGATAAGCCAGAAAAGGCTGAGGTCAGCGATAATGTGAAGGTGGTGGTGCGATGTCGACCCCTcaaccaaaaagaaaaaatgatggGACACAAACAGTCGGTCACTGTGGACGAAATGCGAGGGACCATTACTGTGAACAAGACTGAGACGCCCCACGAGCCGCCAAAGACCTTCACATTCGACACAGTATTCAGTCCCGACAGCAAACAGCTGGATGTCTACAATTTAACAGCCCGACCCATTGTTGATTCAGTATTGGAGGGGTATAACGGAACAATATTCGCCTATGGTCAAACAGGCACTGGAAAAACCTTCACCATGGAGGGAGTGAGAGCCGTGCCTGAGCTCAGAGGGATCATACCAAATTCATTTGCTCACATCTTTGGCCACATCGCTAAAGCAGAGGGAGACACAAGGTTTTTAGTTAGAGTTTCATACTTGGAAATCTACAATGAGGAAGTGAGGGACCTGCTGGGGAAGGACCAGATGCAGAGATTGGAGGTAAAAGAGAGGCCAGATGTGGGAGTCTACATTAAAGACCTTTCTGGATATGTTGTGAACAATGCAGATGACATGGATAGAATTATGACTCTCGGCCATAAGAACCGTTCTGTGGGTGCTACCAATATGAACGAGCACAGCTCCCGCTCTCACGCCATCTTCACCATCACCATTGAGTGCAGTGAGAAGGGCATTGATGGAAACCAGCATGTGCGAATGGGTAAACTACACTTGGTGGACCTTGCGGGTTCAGAGAGGCAGGGGAAAACGGGTGCCACTGGACAACGTCTTAAAGAAGCAACTAAGATCAACCTGTCCCTGTCCACCCTGGGCAATGTCATCTCTGCTCTAGTGGATGGAAAGAGCACACACGTGCCCTACAGGAACTCCAAACTCACCCGCCTTCTGCAGGACTCTCTGGGAGGAAACTCTAAAACCATGATGtGTGCAAACATTGGTCCAGCTGACTACAACTACGATGAGACCATCAGCACCTTGCGCTATGCTAACCGAGCGAAGAACATCAAGAATAAGGCCAGAATTAATGAGGACCCCAAAGATGCACTGTTGCGCCAGTTTCAGAAAGAAATCGAAGAACTCAAGAGAAAACTGGAAGAAGGAGAAATCTCCGGTTCAGAGGGCAGCGGCTCTGAAGAGATGGATGAAGGAGAGGACGAGGCCGGAATCGGTGGAGAGAGACCCCGGAATCGACGAGACCCTAAAATTCAAGACCAAAGAGGAAAGAAGAAGATGTCTCCAGACAAGATGGTGGAGATGCAGGCAAAGATCGAAGAAGAACGCAAGGCCCTGGAGGCCAAGCTGgacatggaggaggaggagaggaacaAAGCACGAGCAGAGctggagaaaagagaaaaagacctACTGAAAGCACAACAAGAACATCACTTATTGCTAGAGAAGCTCTCTGCTCTGGAGAAGAAGGTTATTGTAGGAGGTGTTGACTTGCTGGCCAAGGCTGAAGAGCAGGAAAAGCTTTTGGAGGAGTCCAACAATGAACTGGAGGAACGACGGAAAAGAGCTGAGCAGCTGCGCAAAGAACTGGAAGAGAAGGAGCAAGAGCGCTTGGACATTGAGGAGAAATACACCAGTTTGCAGGAGGAGGCCCAGGGCAAGACCAAGAAATTAAAGAAAGTCTGGACCATGCTGATGGCTGCAAAGTCAGAGATGGCAGACCTGCAGCAGGAGCATCACAGGGAAATTGAGGGGCTACTGGAGAACATCCGCCAACTCAGCCGAGAACTCCGCCTGCAGATGCTCATCATCGACAATTTCATCCCTCAGGAATACCAGGAAATGATTGAAAATTATGTACACTGGAATGAAGATATTGGTGAATGGCAACTGaaatgtgTGGCCTATACTGGCAACAACATGAGAAAACAAACCCCAGTGCCAGACAAGAAGGAAAAGGATCCGTTTGAAGTGGACCTCTCTCACGTGTATCTTGCGTATACGGAGGAGAGCATGCGGCAGTCTTTGATGAAGCTGGAGAGGCCCAGGACTTCAAAAGGTGGCAAGTCAAGGCCCAAGACTAGCCGCAGgaaacGCTCATCTAGGCCAGATACAGTGATCGACTCCCTCCTGCAGTGAGCTTCATCTCCGTCTCTGACTGCAGTCCAGGCTGGTCCTTTCATGAGGTTTAAGAATTATTTGACGTGAATTGTGTAAAGATGTAAGCAAACTgactaaacacatttaaattgtTGTTGAAGAAATGAGCAAATCAATCTAGTGTACATATAGAGGAGTAATGATGTTACCTGCTTCTTAACTGCTGATCTAAAAGCCCTGACTCACTGATTCATTTCAGTAAATGCATTGAGCTAAAGACTCAATTTATTCCACAGAGCTGGAGCTGTTACTAGAGTGTTGGGTTTTGTGTCGCTgtctgttcagttcagttcagtgcaGTGCAGGACACCTGAAAGCCTCAGGAGCAGGATATTACGATTCAGATGCTCTAACTGATTAGCCTGTCGTCTTGAGCAAGCTGCTTTAGATATGAATCACATGCTTGATGCTTGTACTATTTGGCAGTTTGCAGTTACACTGTAGTCTTTTACTTTGTGTATTTATCGTGTGCAGCTAACCTCATTTTGTAGGATTTGGAGGGGGGAGGGGTTGGAGAACCTGCATGCTGTTTACCCCCCTACGCTTGTATTGCCATTTCACACTGACtaactgtattttgttttagttttatgagCTATCACATGCACACTGCACTCGAACAATGTgacctttattttacattataatgtTTACATTTACTGTGCTGTACTCTGTATActtcttaatttattaaattatttacacaCTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97033 lncRNA downstream 81249 7343234 ~ 7343434 (-) True G71900
XR_002650220.1 lncRNA downstream 122375 7301826 ~ 7302308 (-) True LOC111193041
TU96949 lncRNA downstream 243231 7165132 ~ 7181452 (-) True G71845
TU96942 lncRNA downstream 248721 7130751 ~ 7175962 (-) False G71839
TU96941 lncRNA downstream 251772 7130751 ~ 7172911 (-) True G71839
TU97044 lncRNA upstream 52910 7497781 ~ 7498483 (-) True G71911
TU97047 lncRNA upstream 76661 7521532 ~ 7521741 (-) True G71914
TU97104 lncRNA upstream 106314 7551185 ~ 7554641 (-) True LOC103027657
TU97123 lncRNA upstream 211791 7656662 ~ 7666552 (-) True G71975
TU97180 lncRNA upstream 329024 7773895 ~ 7775441 (-) False LOC103030515
XM_007253573.2 mRNA downstream 158762 7260981 ~ 7265921 (-) True LOC103022894
XM_007253579.3 mRNA downstream 417749 6985218 ~ 7006934 (-) True LOC103024994
XM_007253580.3 mRNA downstream 468490 6949576 ~ 6956193 (-) True LOC103025318
XM_007253582.3 mRNA downstream 556421 6864024 ~ 6868262 (-) True LOC103025929
XM_007253585.3 mRNA downstream 831559 6585674 ~ 6593124 (-) True LOC103026932
XM_022672037.1 mRNA upstream 1707 7446578 ~ 7486638 (-) False LOC103030823
XM_007258588.3 mRNA upstream 1707 7446578 ~ 7486414 (-) True LOC103030823
XM_022672038.1 mRNA upstream 108585 7553456 ~ 7590554 (-) False LOC103027657
XM_022671906.1 mRNA upstream 122529 7567400 ~ 7588582 (-) True LOC111193047
XM_007258577.3 mRNA upstream 231416 7676287 ~ 7685366 (-) True LOC103026574
TU96981 other downstream 111757 7309775 ~ 7312926 (-) True G71862
TU96917 other downstream 367040 7057110 ~ 7057643 (-) True G71826
TU96859 other downstream 599927 6777239 ~ 6824756 (-) True G71771
TU96529 other downstream 1582996 5829621 ~ 5841687 (-) True LOC103035656
TU96400 other downstream 1948308 5471666 ~ 5476375 (-) True G71458
TU97555 other upstream 1194667 8639538 ~ 8645601 (-) True G72336
TU97699 other upstream 1721007 9165878 ~ 9174309 (-) True G72449
TU97707 other upstream 1777821 9222692 ~ 9225559 (-) True G72453
TU98300 other upstream 4076016 11520887 ~ 11545223 (-) False LOC111193052
TU98292 other upstream 4076141 11521012 ~ 11545136 (-) False LOC111193052

Expression Profile