RNA id: XM_022672433.1


Basic Information

Item Value
RNA id XM_022672433.1
length 3756
RNA type mRNA
GC content 0.49
exon number 20
gene id LOC103028784
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 25860529 ~ 26053114 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAATTTCCCACCTAAATTCCCGCAGGTCCCTCCCTCCTGCGCTGGGACTGGCTAGGATTTCCTACTACAGCTATTAACCAATCCCAACGTAGAAGTTCAGCCCTCACGAGCCAATCCTAGAGTAGGGAAGCGGTGCATGTCCGAGTACGGGTGTTAAAAAACACTCGCTTATCATCAGGTCGACCGTTACTCTGAGGGTCCGGATAACCGCCCGTCCATATTTTTTCATTCTTACTGAGAAACTGAGGATTTTCTCCCAATGGGGCAAAAAAAGCAACAGAGAACGCTGGATAAAGACGTTTGGATACACCGTGAGACTTTTTACAAcgAGACTTTAATGACCAGTCCTATAATCTCTTGTGGTCTTTCGAACCAACAGTGACATCTCAGTCTCCCTCTGAACTGCCTGGTTATAACCATAAACCATAACCAACCCAAGGAACAATCTCCACCATGGGAGAGAGACGAGGGCGTCCAATCCCTCTTCTGTGTCGGTCCCGGCGTTTTGGCTGGTCCGGTAGCTGTGACAGCGGCGGGCTGAAAAGTTCTGACCCAAATGGTCACACATTTACAGGCCGAAGCTCCGAATACAGCCTAGAGGAGGCAGCAGCATCCCTGGAGAAGCCGCCAGTGGACAGCACATGCTACTCTCCTGTTTCAGTGGAACTGGAGCCTGTGGTGAATAATGGATCAGGCGTCCCGGGCCCTCCGGGTGGACTCACAAAAGAAGCAACGGTGCACAGACAGTACGGCCAGCCGCACTCCTGCTCCTCCCTCTCCCTGTCCAGCGGCGCGGTCAGCGGAGAGCCAGCGCGTGGGCTGCCCTGCCCCGCTCCCTCTCACTTCACACACAGCCCCTACCACGCCAAGACTAGCATGCAGGGTGATGTCTACAACTTCCTAGAGAGAcctgcaggcctgaaatgcttCCTTTACCACTTTCTAGTGTTCCTTATGGTATTAGTATGTCTGATCTTCAGTGTACTTTCCACCATCGAGCAGTATGCAGATTTTGCCACTGGAACACTATTTTGGATgGAGATTGTGTTGGTGGTGTTTTTTGGAACGGAGTATGTGGTGCGTCTGTGGTCAGCAGGCTGCAGGAGCAAATATGTGGGCATCAAGGGCAGACTGCGCTTCATCAGAAAACCCATCTCTATCATAGATTTGATAGTGGTGGTCGCATCAGTTGTAGTACTGAGTGTGGGATCAAATGGGCAAGTTTTCGCCACCTCTGCCATCAGAGGAATCCGCTTCCTTCAGATCCTGCGCATGCTGCATGTGGATCGACAGGGAGGCACATGGAGGCTTCTGGGTTCTGTAGTCTTTATTCATCGGCAGGAGCTCATAACGACCCTGTATATTGGATTTCTGGGTCTGATCTTCTCCTCATACTTTGTGTATCTGGCGGAGAAAGATGCGGTGGATGATGAAGGCAAAACTGGTTTCTCAAGCTACGCTGATGCACTGTGGTGGGGTGTTGTCACTGTGACTACAATAGGTTATGGAGACAAAGTTCCCCAGACGTGGATAGGGAAGGCCATCGCCTcttgttttagtgtgtttgcTATCTCCTTCTTTGCTCTGCCAGCGGGAATTCTGGGTTCAGGCTTTGCTCTGAAGGTGCAACAGAAGCAGAGACAGAAACATTTTAATCGCCAAATCCCAGCTGCTGCCTCATTAATACAGACATTATGGCGATGCTACGCTTGTGAGAAACCTGATGGCTGTCCGGCTACCTGGAAAATGTATGTGCTGACTGGTGACTACATCCCAGTTATAAACTCAGAGAACTCCAGTCCCGGAAACTTCAGAAAACTGAGTAAGCGGTATAAGCGGAGGCTAAAATCTACTCGTGATAATGGTTCCCTGGGGAATGCAGGAGAGAAGGCCCTGTCCATCCCTCAGATCACCTATGATCATATAGATGACAAAGAGGACAAACGAGAGGTGCCTTTCTTCCTCGAGGAACCTCCAGGCATCACAAAGATATTCAGACAGACAGCTCGTCATCACTCGTGGTCTTCTTTCAATCTTAGCTGTCCTGCTTCTCCAGTTAAGAAAAAGCTGGATGGGCATCCCGACATCTCACGCACCAACAGCCTAGTGGATGACATCGACTTCGCCAGTGAGTTCATTCCACTTCCTGCAGTGACAGATGCTTCACATCTACTGACAAGCAATTACTCAGCAAAGGAGGAGGAGTCTGTCTCAACACAGCAGTTGAATTCAAAcagGCTCTCCCATGCGCACAGATCTGCAATCAAAGTCATCAGGAGGATGCAGTACTTTGTAGCCAGGAGGAAATTTCAGCAAGCGAGGAAACCATACGACGTGCGAGACGTGATAGAGCAGTATTCCCAGGGCCACCTCAACATGATGGTCCGCATTAAAGAGCTCCAGAGACGGTTGGATCACACGCTGGGAAAGCCAGGATTGTTTCTGCCAGAAAAAGGTGTAGACAAGGAGTTCCACACTGTTGGAGCCAGGCTGATCAGACTGGAGGATAAGGTCCTTCAGATGGACCAGAAAGTGGAAAACATCCTGAAGATCCTGGTGGAGCAATTCCAGCCCAAACCCGAGCTGCTTCAGAAACCCAGCCACTCCCGCGTGACGGTTATGAAGCGCCTGGGCGTCAGCATGGACGAAGGACAATGAAAAAGAAAGCAGAAACGCTGGGTGAAGATAAGGACACATCTTTGGACTGTGGTTGTGGAAACTGCATGTCCAGGAGAAAAGACTCCACCTCATCTCTCTCCTTCAGGTTTTAGCATTTTATAAAGGAATAGAAATGTGAAACAGCAGTAGTGAGGGGTGGTGAGAAGTTGTGGAGATGGTCAGGATAATAAAGGACTGCAGGAAAGGCAGGAAGAgcttccaaagaaaacaagctatACGTTTGACACCTTAATAGCTTTCAGCAAAGGGCAGCCACTCATGcatttctctctttgtttgaCTGTCGTTAGTTTACTACAGCGCTGAAGGGGCAGCACTAAAGATACGGTTATTTGAGCTGTAAATCCTGGTGTGATTTGGAACCACTGCTCTGCTCCGCAGAAATGCAACAACGGGCAAAAGATCCATAGTCACATATCCATCAGGAGCGTTATTAAACTCCTAAACCACCGGCTCGGCTCACGTAACGCAGGGGAAGCACGACACAGATTATCCGTGGCCCGTGTTAATCTACACTCCGCGTTTAGTGAGTGTGAACACCTTTTCTGTGCGTTAAATCCGCCGCTGATAAATAGCTACAGCAGAGCTAatcaaaacagcaaaacacCGCTGATGGGGTTTAATGGACTTAAATGGAATATTAGAAAGGAAGGGGGGAGAGCTATTTGAGGTTGGGGACTCAGTGAGGAGTGCCAAGGGTTTTTTAGCAGCGGGTTCATTTTCAGAGAGGTTTTGGAGAACCTTCTTCCATTAAATCTGTGATTATTTTTTCTCACTCCAGCTAATTCAATTCAAACTCCGTGCTAAGATGAGTTGGCTCAGCGCCAGGGTTTGATGAAAGGAAACTGCagtgcaaaataataaaatggagATTTGTTTTGAGAAGCGCGGGGTGGCGTGTGTACAGAGCAGGGCGAGGGGGAACGGGGAGATGCATGTCGAACTCGGATGGCTGCGCTCCATTCACCGCACGCACTCAGCTGCTGGCACTCTGCCAAGCGCAGAACaaattgctaggtggttttcttttttagcatgttaatttaacatttactatagtgtgctgagagagagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103228 lncRNA upstream 146679 25713432 ~ 25713850 (+) True G76536
TU103252 lncRNA upstream 205532 25652587 ~ 25654997 (+) True G76552
TU103242 lncRNA upstream 214051 25640587 ~ 25646478 (+) True G76543
TU103237 lncRNA upstream 215394 25636971 ~ 25645135 (+) True G76541
TU103236 lncRNA upstream 216606 25636480 ~ 25643923 (+) True G76540
TU103387 lncRNA downstream 34075 26087189 ~ 26093193 (+) True G76646
TU103397 lncRNA downstream 92511 26145625 ~ 26146752 (+) True G76655
TU103610 lncRNA downstream 518066 26571180 ~ 26571399 (+) True G76833
TU103615 lncRNA downstream 626526 26679640 ~ 26679890 (+) True G76838
XR_002650279.1 lncRNA downstream 630774 26683888 ~ 26685678 (+) True LOC111193118
XM_022672431.1 mRNA upstream 16601 25839352 ~ 25843928 (+) True mansc4
XM_015600835.2 mRNA upstream 29828 25796438 ~ 25830701 (+) True LOC103024360
XM_022672430.1 mRNA upstream 29828 25796446 ~ 25830701 (+) False LOC103024360
XM_007231573.3 mRNA upstream 81957 25726951 ~ 25778572 (+) True dennd2a
XM_022672428.1 mRNA upstream 160474 25680093 ~ 25700055 (+) True LOC103023612
XM_007231584.3 mRNA downstream 183666 26236780 ~ 26286442 (+) True LOC103026929
XM_007231585.3 mRNA downstream 194452 26247566 ~ 26286442 (+) False LOC103026929
XM_022672440.1 mRNA downstream 422393 26475507 ~ 26484181 (+) False LOC103027718
XM_007231587.3 mRNA downstream 422472 26475586 ~ 26484181 (+) True LOC103027718
XM_022672442.1 mRNA downstream 437501 26490615 ~ 26511281 (+) False LOC103027405
TU103131 other upstream 564061 25294501 ~ 25296468 (+) True G76464
TU103035 other upstream 675797 25184085 ~ 25184732 (+) True G76423
TU102930 other upstream 912380 24946788 ~ 24948149 (+) True G76358
TU102912 other upstream 979588 24873400 ~ 24880941 (+) True LOC111193110

Expression Profile