RNA id: XM_022672129.1


Basic Information

Item Value
RNA id XM_022672129.1
length 2553
RNA type mRNA
GC content 0.52
exon number 19
gene id ush1c
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 11805817 ~ 11834740 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cacctctcacacacacacacacacacacacattaacgtTACCCAGCGAACGACAGGAGAAGGAGCGAGgcgatacacacacagatacacacacacggCGGAAAAGCTCTGTTTTTGTCATGGAGCGAAAAGTAGCTCGAGAATTTCGTCACAAGGTTGAGTTGCTGATTGATAATGAGGCAGAGAAGGATTACCTGTATGATGTTCTGCGCATGTACCATCAGTCTATGGAGCTACCTGTTCTGGTGGGGGACTTGAAGCTGGTGATCAATGAACCAAACCGTTTACCTCTGTTTGATGCCATCCGTCCTCTCATTCCTCTCAAACACCAGGTGGAGTATGACCAGCTTACTCCCAAGAGGTCCAGGAAGCTAAAGGAGGTGCGTCTGGATCGCATGCACCCTGAAGGCCTGGGCCTGAGTGTACGAGGTGGGCTGGAGTTCGGCTGTGGACTCTTCATCTCCCAGATTGTCAAAGATGGACAGGCTGGAAACGTGGgccttcagGTGGGGGATGAGATTGTTCGCATCAATGGCTACTCTATATCCTCCTGCATCCACGAGGAGGTTATCAACCTTATCAAGACCAAGAAAATTGTCTCACTGAAAGTCAGACATGTCGGAATGATCCCAGTTAAGAGCTCCTCTGAGGATCCTTTGAAGTGGCAGTTTGTGGACCAGTTTGTTTCTGAATCAGGAGAGAAGAAGAACAGTATTGCTGGCATGGCCTCATTAGGAGGAAAAGAGATTAAAGAGAAGAAGGTGTTCCTCAGCCTTGTTGGTACCACAGGCATGGGCATCAGCATCTCGAGTGGTCCCACTCAGAAGCCCGGGATCTACATTAGCAACGTAAAGCCTGGTTCTCTGTCAGCAGAAGTGGGCTTACAGGTTGGTGACCAGATTGTCGAGGTCAATGGGGTGGATTTTACTAACGTGGATCACAAAGAGgCAGTTCGAGTGCTGAAGAGCAGCAGGAGCCTCACCATCACTGTCCTCACTGGGGCTGGCAGCGAGTTGTTTATGACAGATGAAGAGAAGCTGGCAGTGGAAGCTCGGCGGGAGCTGGATCGTCAGGAGCTCATGCACCAGAAGAGAGTGGCCCTGGAGACCAACAAGATCATCAAAGAGCAGCAAGAGAAAGAGCGCCAGAGAAAGATGGAGATTTCACAGAAGACTGCAGATGAAGAGGAACGATACAGAAAGGAGATGGAAGTGATTGAAGCTGCTGAGAGAAAGCACAACAGAGAGTGGGAAGAAGACTGGGGTTCTAGAGGGAGGTCCAAAAGCCCATCCCCTGCTCCTTCTCCTCCACCCCCATCCCATTCCCCACCTCCTTCCAAACCCAGGAGCTCTGCTCTCAACTGGTTTTACCGTTATGAAGGAAAGTTGCCTACTCTCAGAAAGaaaggaaaagagaccaaaaagaaaaagaagaagatgtCCAAGACAGACACGCTCCAGGGAGAACgaaagagcaagaaagaaaTGGAGTTTGAGCTGAAGTTGGCCAAAGAGAAGGAGGAGATTCTAGAACGAGAGAAACAGATGAAAATCAGTCGACTCTTGCAGGAGGTATCTGAGACGGAACGAGAGGATCTGGAGGAATCGGAGAAAGTGCAGAACTGGGTGGAGAAGCTCTGCCAGACTAGACTGGAGCAGATCTCCTCAGTGGAGAATGATTCTCCTGAGATGTCTCCAACTCGTTCTCCCATGGTTGTGAGAAGATTCCCCGGAGGTCTGCAGCTGGCCACGACCGACCTGGACGACATCAACCTCGATGATGTGGACGAGAGTCTGAGAAAGCCTCTGAAAAGACTGGCTCCTACTCCGCCCACATCCACCCAACCCCCACCACCTTTACCTCTTCCCCCACCCTCACCTCGCCTCCACCAAACCTCTATCCACCCCTCTCCTTCACCCAGACCCTCCTTGACTCCATCCCGCCCTGCTCCCCCCTCCCCTAGAATGCCTCCTCAGCGTCCACCTTCTCCACCCGCTTCCAGGGTGCATCCGTCTTCAATCAGTCGAGCAAGGCATCCCATTCCTCCTTCCCGAATTCAACCTCAGCCTTCCTCCTGGGCTACATCATCCTCTcaccctccacctcctccaccaccccctcctcctcctccccaccaccacctccacctcctcctccaccacagCACGAAGAGGACAAGTACCACACCGTGCCGCCCAGATACCGGCGCCTCTCCGAAAATGAATGGGAGGGCAATGGCTTCAGGCAGCGAGGGGGCTTCCACATGAACGCGTCCAGTAATCCTACCTACCCTGGTGGTGCAAAGCAAATGGCCCCAAGCCCTCCATCCCAGAGGAGACAGATAAACCCAGTCATGTCAAAACCAGTCATGCTGCCCCAATCTCAAACCCCAAACAGACCTGTATTACGCCCAGAACCCACGGTGAGTCTgagattgagtgtgtgtgtgtgttgattagGGCTGTGTGTTGGCAAGAACTTGGTAATACGATACGTATCATGATACAGgggttgcatttaaatatacagctctagaaaaaataaaaggctactt

Function

GO: NA

KEGG:

id description
K21877 USH1C; harmonin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98410 lncRNA downstream 82180 11734144 ~ 11734846 (-) True G72974
TU98401 lncRNA downstream 83877 11694678 ~ 11733149 (-) True G72967
TU98284 lncRNA downstream 585348 11231179 ~ 11231678 (-) True G72881
TU98281 lncRNA downstream 591072 11224779 ~ 11225954 (-) True LOC111193093
TU98254 lncRNA downstream 684753 11079088 ~ 11132273 (-) True G72857
TU98475 lncRNA upstream 213886 12048626 ~ 12050542 (-) True LOC111193053
TU98496 lncRNA upstream 290796 12125536 ~ 12126823 (-) True G73030
TU98587 lncRNA upstream 359833 12194573 ~ 12196578 (-) True G73098
TU98588 lncRNA upstream 359833 12194573 ~ 12196578 (-) False G73098
TU98619 lncRNA upstream 668123 12502863 ~ 12539230 (-) True G73119
XM_022672126.1 mRNA downstream 12991 11739962 ~ 11804035 (-) False abcc8
XM_022672124.1 mRNA downstream 12991 11739962 ~ 11804035 (-) True abcc8
XM_022672125.1 mRNA downstream 12993 11739962 ~ 11804033 (-) False abcc8
XM_022672127.1 mRNA downstream 77655 11737283 ~ 11739371 (-) True kcnj11
XM_022671911.1 mRNA downstream 271780 11521832 ~ 11545246 (-) True LOC111193052
XM_022672133.1 mRNA upstream 109685 11944425 ~ 11953789 (-) False LOC103031503
XM_022672130.1 mRNA upstream 109685 11944425 ~ 11953789 (-) True LOC103031503
XM_007228098.3 mRNA upstream 109685 11944425 ~ 11953786 (-) False LOC103031503
XM_007228099.3 mRNA upstream 109685 11944425 ~ 11953785 (-) False LOC103031503
XM_022672132.1 mRNA upstream 109685 11944425 ~ 11953785 (-) False LOC103031503
XR_002650239.1 other downstream 40887 11767509 ~ 11776139 (-) True LOC111193095
TU98300 other downstream 271803 11520887 ~ 11545223 (-) False LOC111193052
TU98292 other downstream 271890 11521012 ~ 11545136 (-) False LOC111193052
TU97707 other downstream 2591467 9222692 ~ 9225559 (-) True G72453
TU97699 other downstream 2642717 9165878 ~ 9174309 (-) True G72449
TU98666 other upstream 729608 12564348 ~ 12564798 (-) False fbxo31
TU98667 other upstream 729608 12564348 ~ 12564966 (-) False fbxo31
TU98668 other upstream 729608 12564348 ~ 12564874 (-) False fbxo31
TU98709 other upstream 776094 12610834 ~ 12621356 (-) True G73172
TU99163 other upstream 2707469 14542209 ~ 14545438 (-) False LOC103025073

Expression Profile