RNA id: XM_015600993.2


Basic Information

Item Value
RNA id XM_015600993.2
length 4862
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC103034044
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 11955624 ~ 11963784 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGATGGCAGTGCTCTTGTAGTCTCTGAGGCTTTGGGTGACTTGAGTGGGCAGGTGGGGGTACATGGAAGGTCCTCTGGACACCTCCTGCCTTGCTGGCGGTCCCTGTGCAGCAGTGCTACTCGGCGCACACATTCTAAGTAAAGGGCTCTGGTTTTATTTTTGGACTGCTATGGAGCCATTGCCTTCCATTTGGAGGAAAGGACTCGCTGAGCTCAACATGAGCCTCTTGTTCTGACACTCCAGGCTGGGAGAAGCAGGCAGCAGCCAGTCGCCCCTGAGCAGCAGAAACACAgGGGACTCTGACTAAAGTGAGCCATCTGTCATCTGTTAAAATCATCTCTTGGGGGCTGACATTTCCATGGCTGTAAATATTGGCAACGCTGCCCAAGCAGGCCTGCTTTCCCAGCAGTACCCACCACCTCTGCTTCCTAAACCTGGGAAGGAAAATGTCCGCCTCCAGAAACTACTTAAGAAAACGGCCAAGAAAAAAGCTGCCTCACAGGCCTCCCAGACACCAGTCCCCTTCCGCTCCAGCCTCTCTCCTGTAAACGAGGCAAGTCCTGACCTGGAGCACAGTGACCATTCTACTCCCCCCAGGACACCAGAGACACCCATCTATGGAGGTACACTACACCCTCGTTTCAATGTCAGGCCACTGTATCAGCATATAGCCTCCCCTTACCCTCACCAGCGATCCTTCAGTTACGGCAAACCAACAAGGTTCTCTCCACAGCCCTTTGTTCCTCCGGGCCTTAGTCCACCACACCACATGGCTCCACTGTTCTCCTATTCAGCTCCATCTCATTCTGTTCCTTTAGTAACTGTTACATCTGTAGCAGCTATAACTACCACCACTGAGTTCATCAGGCATGCAGACATCAAACCAGGTTCAGCCGTAAAGCAAGTAAACAATGTTGTGCTCACTACACAGCTGGAGTCCAACTCAAGTCTTACACCCACCTTCACTACTTCTAAACAATCAAAACCCATGTTTGACGTTccacaaattacaaattacacttCCAAGACTGCAAGTCTAAGAACTTACACGGCATCACCAAAACAAGAAAGGAGTAAAACACCTCTTGCTGAGATAAAGCGAAGTCAAACCCCAACATTTGAGGTTAGGAGGATTGTGACACCAACATCTGAGCTAAAGAGAGAACGAACACCAACCAGAGAAATTAGAAGGGGGCCGACACCCACATCTGAAATTAAACGTGGTGCAACACCTACATTTGAAATCAAAAGGGGTCCAACACCTACATCTGAAATCAGAAGGGGTCCAACACCTACAGCTGAAATCAAAAGGGGGTTGACGCCTACATCTGAAATCAAAAGGGGTACAACACCTACGTCTGAAGTCAAAAGAGGCTCAACGCCAACACCTGAAGTCAAAAGAGGCCCAACACCAACAAAAATTCCTACTACAACACTGGAAGTTAAGAATGGTACTACCCAAACATCTGAGATAAGAGGTGATGCAACAGTAAAAACTGAGACAACGAGAGGACGAACCCCTACAAGAGAACGGACACCGACATTAGAGTtgacaacaacaaaaactcTTACAGGACGACCCAAGACACCCTCCTATCATGTGTCTCCTGCCAGAACCCCTGTCATAGAAATTTCAAGACCTAATCCACTTCTATTTGCTGTTTCCCCTGTGCATATGGAGGGTAGAAGATCCAAAACACCAACCTCAAGTCTACTGGGGCCAAGTGATGAAACTCCTAAAGAAAGCAGCAAAATCCCAGAAGCTATCCAAAATGGGGATGTCCAGATAAAGCCACCTGAGATTTCCGCagataaaaagtcatctgaCAAAATCAAAGAACCTGAATTACCAAAGCCAAAGATCCCCACACAAGATGCTCCAAAGTTTACAGAGACCTCAGAACCCCAAGGTCAGATGACCCCTTCACATGAAAGTTCTAAACCTGTTCCTACAGCTGAGTTCCCATCACCCAAACCACCAAACCATGAGTTTGATAAACCTGTGCTACCCTCACCAGGACTTCAGAGACCAAGAATACCTCCATTTGCAGGTCAAAGACCTAGAACACCCACATCAAAATCACCCAAATCAACATATTATGGATTAACCCCATCTGAATATGTTGCTCATGGGGGGATACAGAGTTTTACACCTGCATTTGGTATCTCAAGACCTATTTCACCAACTACTGCGGTATCCAAACCTCCAGAACCGGTATCACAAGAACCTACACAAAACGCTCAGGGAAAAGCAAAGGATCAGTCTACTCTGAAAGAGGCAGCTAGGCCTGAAGCAGTGCCTAAGCAGTCAGAGACACCTGTGAGTAAAGTACCACCGTCCACAAATGCTGCACCTACAGCTACAGTCTCAGAGCCAACACCGACACCAGCAGTGCAGAAAATACTCAAATCTGTTAAAGAGACACCAAAGTTACCAACaccagaaataaagaaaactgaaGAAAAGGTCTCTGCAATTACTATTCCAACGATTGTGGTGTCTAAAGCTGACACACCACCAGCAGAAGTACCTCAGGCAGTGACTACAGTTCCTGTGACGCCGAGAGTCAGGACCCCAACATACGGCCCTCCTAAACCAAAATCACAGCCCTCTGACTCCACAGTGGAACCCACTAAGCCTGAAACTAAACCAGCCTCAGCACCTGCACAAACTACAACATCTAACCAAACTGCAGACGTTGCTAAAATCTCAAAGCCAACGCCAGCAAAAGatgcagtcactgcaaaaacagacaaagtCTCAAAGAAGCCATCAGCGCCCCAAAAGTCGTTATTAGAGAGGATTAAAGAGCAAAAATCTTTAACAACAGTGGCTTCTGACAAAACTGCAACAGAAAAGACACAAGATAAGCCTCTGGTCAAGCCAGCAGATGACCAGAAGGACAAAGTGAAACCTGAGAAAAAAGATTTAGCAGAGGCTAAAGAGAGTACCCTACAGGAGACTAAGCCTGCAGCGGAGGAGAAGGGGGACGGCAGCTCCCCTCCAGCAGCAGAGCCACTCCTGAAGGCATTTCAGAAACCAAAAGGCATGAAGTCAAAGCTCAGCGGCTGGTCTCGTCTCAagaaacacatggtggtggAGGTCGAGGAGCCTACATTTCCTGATGCGGAGACAGCGCTGAAAAAAGAGGCCCCTGATGGCACTGCCCCGAAACCAAGTGAGCAGAAACCACAGGGCAAAGAAGCAGATAAGATTACTGAAAAATCTGAGAGCCAAGAGGATACAGACAGCCCCAGGGCTGCGAAAATGTGGGACGCTGTCCTCTTCCAAATGTTCTCTACCAAAGAGAGCATCATGCAACAGATAGAAGCCAGCAAAACCGATGAGCAGaagaaagaagaggagaaaCTGGACAAACAGAAAGAAATTCCATCATTTGCACATCGCCTTCCAGTTCTCCTGTATAGCCCTCGGTTTGATGCTAGAAAACTGAGAGAGGCAGCCTCACGGCCTGTGACAAAGATTGCAACAGTATTCGAGATGGGTCTCATAGGCCGCAAAGGCAAAGATGAAGAACCAAAAGACTTCAACAGAACCGCCAAAGGCTTCGCTGCTAGTAAATCCACTGACGTGTAGCTGAAGAGTAGATGTTAAACGGCCAAggatatttgtaattttttcagTGATAGTGTACAGTTCTGTTTATCACACAttcagtttctttaaaatttcattaagttactttaaaagagctaaacagaaaataaatgttatttgtatGAAATACAGTGAGGAATTTAAATGAATCAGTAGTATTGTTTTACTTCACTGCCAGTTTCCCTGACATGTTATTTTTTTGGCAGGGAGAAGTACAAAACATAGGCCTTTCACTTAGATATCCCCCAGTGATTAAAGAATGCATTGATAACAAGCATTCGAACAGCTTCATTTCATTGATCTGTCATCACTGatagtgaaaaaaatgaagaaagtaTGGTGAAAGAATCACAGCCCAACACGTATGCAGTTCTTTCATGGCTGAAGTTTGCCATATGAGTTACACAACAAAATCCAAACCCTGACTGATGTCTCGGAAAGGAgatttgagggtttttttttttgcataatggaAGTGTGAATATTAGGCATCATGGAATATTAAATTGATGTACTTTAATACTCAGTATTCATCATGGTGCTTATAAAAAtcctttcctttttattttttctcttttattgtttttttgcctttttttttttttgacaatgccAGGGAGGCGTAGCTGGCAGAAAAAAGCTGTGATAGTGTGTTCAGTAGAGGAACAGGTTCGACAGGGTAAGGAAAGTTTTATGAGGGTGGAAGGGTGGGAATGGGGTGACTGTGACGTTAAGTAGATGTGGGAATAAGAGAAAAATCTGTATGATAGTGACAGAGCTTCTGATTCTACCATGAACATCCGGAGTAGAAGCAGACAGTGCATTGAGGTATATTGATGACCAGAGCATGTCTAAATGAAGCTGCATGCCTGAAGTGTTGACAGGCAGCTTTCACTGACAGAACCCTAAAACTGAGCATAAAGCCACTGGGTTCTGCTGaactgatagaataattaggtTGGGGATAGCACACAGCAGTGCATACTGACTGTCAACCCTTACGCTTGGCAAAAAAAAGTGGTCAGGATCTCCTTCAGCCTAAAGTCCTCTTAAAATCTGAGATGAATTAATTGTCTACTGTATGTTTTATGCTTGGCCTTTTTTGCATGTATGTCTTCAAACGTCAGACTGGGTACAGGTTCTCTGTGTGGGCTGTGATGTGTATAATGCTTTGCCTTTTATGGTGCGTTGTACTAgatgttgttttatatttatttttgtaataaaaacgCTTGATTTGGA

Function

GO:

id name namespace
GO:0006793 phosphorus metabolic process biological_process
GO:0006796 phosphate-containing compound metabolic process biological_process
GO:0016310 phosphorylation biological_process
GO:1990351 transporter complex cellular_component
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:1902495 transmembrane transporter complex cellular_component

KEGG:

id description
ko04260 Cardiac muscle contraction
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98442 lncRNA upstream 3859 11943977 ~ 11951765 (+) False G72993
TU98443 lncRNA upstream 3859 11943977 ~ 11951765 (+) True G72993
TU98444 lncRNA upstream 3859 11943977 ~ 11951765 (+) False G72993
TU98446 lncRNA upstream 3859 11943977 ~ 11951765 (+) False G72993
TU98379 lncRNA upstream 137386 11812999 ~ 11818238 (+) True G72946
TU98456 lncRNA downstream 14424 11978208 ~ 11978882 (+) True G73001
TU98441 lncRNA downstream 69299 12033083 ~ 12050540 (+) True G72992
TU98493 lncRNA downstream 161849 12125633 ~ 12126858 (+) True G73029
TU98494 lncRNA downstream 161849 12125633 ~ 12126465 (+) False G73029
TU98497 lncRNA downstream 166778 12130562 ~ 12130798 (+) True G73031
XM_007228102.3 mRNA upstream 13807 11939524 ~ 11941817 (+) True myod1
XM_007228103.3 mRNA upstream 13807 11939524 ~ 11941817 (+) False myod1
XM_022672134.1 mRNA upstream 17244 11925987 ~ 11938380 (+) True LOC103038976
XM_007228089.3 mRNA upstream 222429 11665815 ~ 11733195 (+) True LOC103029705
XM_022672140.1 mRNA downstream 401581 12365365 ~ 12417357 (+) True znf469
XM_022672142.1 mRNA downstream 494761 12458545 ~ 12485409 (+) False LOC103039191
XM_007228121.3 mRNA downstream 494764 12458548 ~ 12485409 (+) True LOC103039191
XM_022672141.1 mRNA downstream 509790 12473574 ~ 12485409 (+) False LOC103039191
XM_007228122.3 mRNA downstream 510061 12473845 ~ 12485409 (+) False LOC103039191
TU97933 other upstream 1873484 10078579 ~ 10082140 (+) True G72621
TU97487 other upstream 2806205 9142899 ~ 9149419 (+) True G72281
TU96877 other upstream 5070083 6881587 ~ 6885541 (+) True G71788
TU96736 other upstream 5416830 6525641 ~ 6538794 (+) True G71682
trnaa-agc_15 other upstream 5917876 6037676 ~ 6037748 (+) True trnaa-agc_15
trnar-ucg_4 other downstream 639568 12603352 ~ 12603424 (+) True trnar-ucg_4
XR_002650241.1 other downstream 907700 12871484 ~ 12897931 (+) False LOC103043719
TU99159 other downstream 2685045 14648829 ~ 14649551 (+) True G73533
XR_002650242.1 other downstream 2927750 14891534 ~ 14921003 (+) False rpgrip1l
TU99974 other downstream 4322892 16286676 ~ 16288329 (+) True G74169

Expression Profile