RNA id: XM_022672165.1


Basic Information

Item Value
RNA id XM_022672165.1
length 4363
RNA type mRNA
GC content 0.50
exon number 15
gene id pamr1
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 13920173 ~ 13964026 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAAACAGCGCTCCAGAGAGCAGCATGCCTTCAGCGGCACGGCTGCAGAGGCAGAGCCAGCGGCCATGCGGCACGCTCCCTCCCGGCTCCCCGCTCTTCCTCAgcctcctcatcctcatcctcctgCTGCCCCCAGGCAGGGCCTGGCCATACGacTACAGACATCTGTATAACTACTGCCCCGGGCCGGAGTGGAATGTGATGTGTAGAGGATGCTGCGAGTATGATGTGATCCGGTGTAAATGCCCACTTCAGGGCACACCAGTGGGCTATGCTGTTCCCTGCTGCAGGAACGCTCGCAACGAATGTGACCCCTGCATCATTCACCCAGGGTGCAGTATATTTGAAAACTGTAAGCGCTGCAACAATGGGACGTGGGGTCCTAGAGACAACTTCTTCATTAAGGGCCAGTACTGTTCGGAGTGCCGTCCTGGGTGGTCCGGTGGAGACTGTATGACATGTGGTGGTGTGATCAGGAAGAGGCAAGGTCATCTGGTTTTGGAAAGCTACCCAACTAATGCCCGCTGTGAGTGGACCCTGCAGGTGGACCGGCCTTTCACTATAGAACTCAAGTTCATGATGCTAAGCCTGGAGTTTGACCACAGCTGTCGCTATGACTTTGTGGAGGTTAGAGACGGAGACAGTATAAACTCTCGGGTGATTGGCCGCTTCTGTGGAAACGAACGCCCTCCTCCCATCCAAAGCACTGGCAATTCACTGCATATATTGTTTGTCTCAGATGGCTACAAGACCTTCGATGGATTGTTTGCCATCTTTCAGGAGAACTCAGCATGTACCTCCTCTCCCTGTCTGCACGATGGTACCTGTATATTGGACTCCTCTCACTCCTACCATTGCGCATGTTTAGCTGGATACACTGGCAGGAGATGTGAGCATGTGCTGGAGTGCAAGAGGCCTCCAATGCCAGAACACGGCTCGATGGAGAGTCTGGATGTCAGGGTTGGAGGTCAGGCTTTGTTCCGCTGTGATGCAGGTTTCTCCCTCAAGGGCTTCCGCATGTCCACATGTCGGCTGGATGGCTCGTGGACCACGCCGACTCCTCTGTGTGTGCCAGAAAAGAACTGTGGCATACCTCCTAAGCCGGCATATGGAGACCATTTCCTGGTCTATGGTCCCAATGATGTGCTCATTGCCCTGCAGTACTTGTGCTATAGGCCATATGCACTGATAGGAACTCCTCAAAGGACTTGTCTGGGCAACAACACGTGGAGTGGAACAGCGCCCATCTGTGTCAAAGAAGAGGAGATCATTCCATTTCCAGATAAGGACAAAGACAAGAAAGTTGAAGAAATCGGAAAAGACTTTATTGATAAGGCTGGTcaagataaagaaaaaattcCGGATATAACTAATATTTATATAGAGACTCCAACAAGTGAAAAGGACAAGACTGGACAAGTTGAAAAACTTGGTGAAGACAAAGGACAAGAAATTGGGAAAGATGTTGGAAAGGACCCAGGCAAAGACATTGACAAGGACCCAAGCAAAGACATTGATAAGGACCCAGGCAAAGACATTGGGAAGGACCCGGGCAAAGACACTGATAAGGACCCAGGCAAAGACATTGATAAGGACCCAGGCAAAGACATTGGGAAGGACCCAGGGAAAGACATTGGCAAGGACGCAGGGAAAGACATTGGCAAGGACCCAGGGAAAGACATTGGAAAAGACCCAGGGAAAGACATTGGAAAGGACATAACCACTATTGCTAGCAAAGATAAAACTACCGGCAAAGATCCTGATGACAGCATGAACACAGTCAGAAAGAAAGATTCAGACAATGGGAAACACGGTCAGAAATACCTAGGCAAAGACAATGATCTAGAAGGCGAAGACAATGCCGTAAAAGACCCAACAAAGGATCTGGGCATAAACACTGTGGATATTGTACTAATTGATGACACAAAGAATCATTTCATTGATGGGGACATTAAGGAAACTATACCAATCATACCCAAAGCTCCCGaaaaggacaaaaaagaaaCCGCAACCGATGTACCACAGTTCACGATAGTCAGTCTAAAACAAGATGAGAAAGACAATGTGCTTTATACAATAAACACCTCCGGCCCTGGCAATAACACAGAGCCTGTAGATAGTAATGACATAGAAGGAGACCTGGAGACGCTGCTGCCAAAAGAAACCGTAAAGATCCAACCCAAAGCCACTGAAGGTAGCAGCACAGTCAAAGCCATTGTGCCAACTATGAGTCCAGTGACTAAGAAACATTCAGTCACTGAAGTGACACAGCAAGGTGGTGCCAAAGAGGAGACCACAGAGTCTGTCTCAGAAACCCAGTCTAGAGAGGAGCCCCCTGTTAATTCAGGAGCTGAAGATGAGAGACGACacacagagaaggagagaggagcAGAGAACCTCAGCATCGTTGaagCTGAAGGGAGAAAGTGTCCTCCACCCCCACGGCTGTTCCAAGGCTTCTATGAGTATGTGCCTGGTCTAAATCCAGAGACTGTGGAGTTCTCCTGCAACCACTCATACGCTCTGAGTGGCAACGCCCGCAGAACATGTCAGCCTAATGGCACCTGGAGTGGCACACAGCCTTTCTGTGTGAGGGCTTGTCGAGAGCCCAAGGTCTCAGTGCTTGTAAAGCAGAAGGCTCTGCCGCCACAAGTCCCATTCAGAAAAACTCCAGTGCACAAATTCTATTCCTCCTCTGGCTTTACAAAGTTCTTCAGTCCAGTGAGCCCCACAAAAGGCCCCCCAACTCTAGCTCCTCTCCCCCAGGGCTTCCACCATCTCTATACACACATCGAATACGAGTGCACATCACCCTACTATCACCACACTGGAAGCGCTCGCAGAACATGCCTCAAAACGGGCAAGTGGAGCGGCCGTCATGTCTCCTGCTCACCAGTGTGTGGCAAGCTGCCAAACTTTGACCCACAGCATCCGGTGGACTCTCATTGGCCGTGGCTCGCCGCCATCTACCGCCTGTCTGGGCAGAACGGCGGGGGAAAGCTGGGGAAGGCTGCTACCTTGGCTGAAGGGAAAGGCAAAGGTTCGGCACTGCTGGATGATGATGGGAGCATGGCTGCAGACACCTGGCAGCTGGTGTGTAGCGGAGCTCTGGTCAACCAACGCAGCGTGGTGGTCGCTGCCCACTGTGTGACCGAGTTGGGGAAACTCTACCCGCTAGACACTGCCAAAGTCCGAGTGGTGCTGGGAAAGCAGTACCGCAGTGACTCGCGAGAGACCAAGGGCCTTCAGCGACTCAGGATATCTTCCATCACAGTGCACCCTAACTACGACCCACTGGTTCTGGACTCTGACCTGGCGATACTAAAGCTGCTGGACAAAGCTCGTATCGGTGAACATGTGCTGCCCATTTGCCTCCCAGATGCACAGGATGCTGGAGAGAACTCTCTTTCTATTCGGGGCATGGTGACAGGCTGGTCCCTGATCAGCAGGGCTAGGGACAGTGAGCGGGCCCGCGTGGGCACAGTGATGCTGGGTGATGTAGTTCACTGTGAGCAGCAGTACGCCCAATATGGCGTTCCCATCAGCGTGACGGAGAACATGCTCTGCGGGCGCCAGGGTGCCGGCGCCAGTCCTTCCAACATTTGCCCAGCTGAGACAGGAGGGGTCCTTATCCTTCCACCCTCTACAATTCCTGACCCCACCTCCTCActcaaaccaaaccccacacaaGAGTGGAAGCTTCTGGGACTGGTCAGTTTTGGGTACGACTCACTGGACTGCAACCCAGAACTCTATACCATCTACACGCACATTGCCAACTTCATCGACTTTTTAGACgggaatatgaaataaagagAGGTCTGTGCGGTTTACTTCCTCCTCCACTCCCATACCTCACGTATGCTCCTCCTTTCTGCCTTCATAATACTTAGAAGCTAAGTATGTTGCTTACGTTAAGGCTAAACTAACACTGGACTGTGCAGTGCCCTGCTACGAGAAGACGGCAGTAGTTAGAAAGGGCATGAACCCTAATCCAGGTAGAACTTACTCTGTGCTGAGCTAGGACCAGCTTCTCCCAGCTATATCTTTGGCTTAAATATGTAATACAGAGACCACAAAACTGACCCTAGAATAGCATGAAAGGGAAACTTCTACCAACACTGACCCCTCCTTTAACGACGTGCGGGTCCTCAGGTAATCGGTGCTGTAGAATTGACCAGAAAACCAAACATTCTGTGATATTTGATATCAGCGACGTTTGGTCTTctgaatgtttttaatgtacatatattgtaatgtattattcTACAATTGTAAACATGACTGAATGgatgtatatattgtgtaaattaCTGTGAGCTTATgatcttttaaataaaatgacgTGGTGGTTGTGttctaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98957 lncRNA downstream 89416 13828718 ~ 13830757 (-) True G73371
TU98894 lncRNA downstream 502711 13416657 ~ 13417462 (-) False G73322
TU98895 lncRNA downstream 502711 13416657 ~ 13417462 (-) True G73322
TU98871 lncRNA downstream 681859 13237953 ~ 13238314 (-) True G73302
TU98850 lncRNA downstream 831737 12989186 ~ 13088436 (-) True G73281
TU99027 lncRNA upstream 42726 14006752 ~ 14007149 (-) True G73429
TU99030 lncRNA upstream 74043 14038069 ~ 14038368 (-) True G73432
TU99032 lncRNA upstream 106473 14070499 ~ 14072038 (-) True G73434
TU99102 lncRNA upstream 312653 14276679 ~ 14277106 (-) True G73491
TU99124 lncRNA upstream 503596 14467622 ~ 14468141 (-) True G73509
XM_007228155.3 mRNA downstream 10570 13861550 ~ 13909603 (-) True slc1a2
XM_007228154.3 mRNA downstream 36608 13861550 ~ 13883565 (-) False slc1a2
XM_007228156.3 mRNA downstream 36618 13861550 ~ 13883555 (-) False slc1a2
XM_022671890.1 mRNA downstream 72031 13833553 ~ 13848142 (-) True LOC103022766
XM_007228148.3 mRNA downstream 970734 12944453 ~ 12949439 (-) True rag2
XM_022672168.1 mRNA upstream 426659 14390685 ~ 14460388 (-) True LOC103024229
XM_007228165.2 mRNA upstream 578170 14542196 ~ 14545536 (-) True LOC103025073
XM_007228164.3 mRNA upstream 586846 14550872 ~ 14554955 (-) True cib1
XM_022672170.1 mRNA upstream 602884 14566910 ~ 14574221 (-) True LOC103040849
XM_007228304.2 mRNA upstream 610769 14574795 ~ 14578518 (-) True LOC103041151
TU98709 other downstream 1298817 12610834 ~ 12621356 (-) True G73172
TU98667 other downstream 1355207 12564348 ~ 12564966 (-) False fbxo31
TU98668 other downstream 1355299 12564348 ~ 12564874 (-) False fbxo31
TU98666 other downstream 1355375 12564348 ~ 12564798 (-) False fbxo31
XR_002650239.1 other downstream 2144034 11767509 ~ 11776139 (-) True LOC111193095
TU99163 other upstream 578183 14542209 ~ 14545438 (-) False LOC103025073
XR_002650248.1 other upstream 1797738 15761764 ~ 15778423 (-) False LOC103046265
TU100463 other upstream 3913000 17877026 ~ 17883786 (-) False nrg4
TU100498 other upstream 4018721 17982747 ~ 18029747 (-) True G74591
TU100745 other upstream 4975148 18939174 ~ 18940464 (-) True G74791

Expression Profile