RNA id: XM_022672186.1


Basic Information

Item Value
RNA id XM_022672186.1
length 3131
RNA type mRNA
GC content 0.46
exon number 14
gene id LOC103041261
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 15362768 ~ 15380544 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tcatcatcatcatcatctctccgtgacacagcagcaacagcagcagtagcagtttCAGCCCCGCTCTAAACGGCCCTGTTTACAGCCTACAGCTCGCCCAGCTGCCCCCGCTGAGGGCAGCGCTGTTCGGGGAACACGCACACGAACCCAGTAAAGATGTCCGGTACCTGTTCGTCTGCGGCGAGGGTGCTTTTAAATTCTGCACATAAAGGCTTTTCAAGTTCGCGCATTCAGTTTTTTGCCCTCAGTAGACCAGCGTCCCGTGAAGCTCATCTTCCTCCAACAGTACAGGTCCGAGTGTTTTCAGAGACTGCGGTGTGTTTTGCCTCAAAGGACAGCACACCAACTGGTGGATCCAATGATGGAGGAAAGAAGAGTGTGACAGAAATGGTTGGAAAGCGGTCGATGGGTTCGGGGGGCTCAGGAAAAGGAGGCAGTCAGCTCCGTTGCCCCAAATGTGGAGACCCCTGCACACATGTGGAGAcatttgtgtCATCGACACGTTTTGTGAAATGTGAAAAGTGTCATCACTTCTTCGTGGTGCTTTCTGAAACTGACTCTAAGAAGGGTCTGAATAAGGAGGCAGAATCTGCTGCTGAGGCTGTTAAACTGGCATTTGCTCAAAAACCTCCTCCGCCACCTAAAAAGATCTATGCCTACCTCGATAAATACGTAGTTGGCCAGTCATATGCAAAGAAAGTGTTGGCAGTTGCAGTGTACAATCATTACAAACGGATCTACAACAACCTCCCAGCAGGAGGCAGACAGCAGGTGGAGGCAGAAAAGCAGAGTTCTCTGACTCCTCGAGAGTTGCTTCAGATTGCTGGGATCAGTCCACATGGCAATGCTCTTGGAGCTTCTGTTCAGCAACAGGCCGCTCAGCAAGCTCCACAGGAGAAAAGGGGAGGAGAGGTGCTGGAATCAACTCATGCTGATATCAAATTGGAGAAGAGCAACATTGTGTTGCTGGGCCCTACAGGATCTGGTAAAACCCTGTTGGCACAGACCCTGGCTCGGTGCCTGGATGTTCCTTTTGCCATCTGTGACTGTACCACCCTGACTCAGGCTGGTTATGTGGGTGAGGATATTGAGTCAGTCATAGCTAAACTGCTACAAGATGCAAATTATTCAGTGGAGAAAGCCCAGCAAGGAATAGTGTTTCTGGATGAGGTGGATAAGATTGGGAGTGTTCCAGGAATCCATCAGCTCAGAGATGTGGGAGGAGAAGGCGTCCAGCAGGGTTTGTTGAAGCTCCTGGAGGGAACAATTGTGAACGTTCCAGaaaagaacagcagaaagtTGCGAGGAGAAACCGTGCAAGTTGACACAACCAACATCCTGTTTGTGGCATCAGGCGCTTTCAACGGATTGGATCGAATCATTAGCCGCAGGAAGAATGAGAAGTACCTCGGTTTTGGCACACCCTCGAACCTGGGAAAAGGGCGcagagcagctgcagcagcagatctGGCCAACAGTTCTGGGAGTGAGGTGGATGCAGTGGCTGAGATTGAGGAGAAGGACAGACTCTTAAGGCACGTAGAGGCGCGGGATCTCATCGAGTTCGGGATGATTCCTGAGTTTGTGGGAAGACTGCCTGTGGTGGTGCCTCTGCACAGCCTTGATGAAGAGACACTGGTTCGTATTCTCACAGAGCCTCGCAACGCTGTGGTTCCACAGTACCAGGCCCTCTTCAGCATGGACAagtgtgagCTGAATGTGACTCCTGATGCACTGAGAGCCATTGCCAGACTAGCTCTCGAGAGGAAGACTGGAGCCCGAGGCCTCAGATCTATCATGGAGAAGCTGCTGCTGGAGCCCATGTTCGAGGTGCCACACTCAGACATCATGGCTGTGGAACTGAATAAAGAAGTGGTCATGGGCAAGAGTGAACCACGTTACATGAGGGCTCCAGCTAAGGAGAACACAGACGAGGAGTACGACTCTGGCATCGAGGAGGAGAACTGGCCGAGACAGGCAGATGTTGCCAACAACTGAGAATCCAGCAGTGTATCATTCAGGATCTTTCCAGGCTCTGGAACACAGTCACTGAACACAAGAAGCAACTTTCACTTGTCCAGGGCTGGGAGAGGGGACCTCACCTAGACATCTAGATATAATATGGGGATGTTTAAttgttaaaatatgtaaaaatcatAAGGACAGAGAGCAGTAGATTTTTTAATCACCTTCTGGTCCAAATCTTTCCTATAacctgtaaaaagaaaatcctgTACAGAACAACACTATTGGGCTTTAAGGTTTATCTGCAAATGTTAGAGATtgtcaacattttttatatatatacatatatataaatctaaagACAGTTATATATTGTTCATAATAAGATTTTTGTGAGTGACTTTTTTGTGAGGAAGATTTTTTGTGAGTGCACAGTGGAGGGAAAATTTGCCGAAACGTTTGCCTTCAGCGGGATCAGATTATATACACTTCAAGGCATAAGACTGGGAATgttgaattttattatttttggtgcaacttcttctttttctcatcTCAGTAATAGTATTCCAAACTGGGATAATGGCGGTCCTGTTTTCCCATCCTGTCTGTTTTAACGATGGTATTGATTTCTACAGATGCTATGTAAATGTGAAGCTGCTCTAGTCTTGTAgaacaattatttttaaactacCTATAATTTAACCAAGAAAGCAGATAGAAATGATGGTGATTTTGAAGCCCTTCTAGCCTTTCAGTCAAATGTGTTACACAACCGTTGGCTTTTGTCCACCTTGTCATCATAATAGATGTACTGTTTGTCCCAAACCTCAGGCTCGCTGGAGTGTAGTAGATTATAAGGGTTAGTAAGTCCCAGTACTTCTTGTTCTCTAGAAATAAAACCTGCACATACACAGCGCACACACACCGAGTACACTGTATTATATGACACAGtgataaaagtgtgttttaatcaGGATCACACCAGTTTAACTTTCAACTTGCtcgttttattgttttgtttattatttttttgtgaatcagGTCCCCCTTTTCCCATTTCAAACGTCAAACAAACAACCACAAAAGCCATTAAGTCTGGTATCTCAAAGATTTATAGTTGTCattgtttaaaactttaataaaaaaaagatatgtcactgtaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99416 lncRNA upstream 173382 15188895 ~ 15189386 (+) True G73715
TU99417 lncRNA upstream 173382 15188895 ~ 15189386 (+) False G73715
TU99420 lncRNA upstream 173382 15188895 ~ 15189386 (+) False G73715
XR_002650246.1 lncRNA upstream 174813 15186249 ~ 15187955 (+) True LOC111193097
TU99411 lncRNA upstream 235781 15123872 ~ 15126987 (+) True G73710
TU99525 lncRNA downstream 1534 15382078 ~ 15383583 (+) True G73798
TU99529 lncRNA downstream 3479 15384023 ~ 15384237 (+) True G73800
TU99530 lncRNA downstream 4311 15384855 ~ 15385124 (+) True G73801
TU99549 lncRNA downstream 48204 15428748 ~ 15429645 (+) True G73817
TU99551 lncRNA downstream 74391 15454935 ~ 15457857 (+) True G73819
XM_022671918.1 mRNA upstream 4874 15355735 ~ 15357894 (+) True LOC111193056
XM_022672185.1 mRNA upstream 11424 15308529 ~ 15351344 (+) True lrrk2
XM_007228205.3 mRNA upstream 11424 15309059 ~ 15351344 (+) False lrrk2
XM_007228203.3 mRNA upstream 281745 15075459 ~ 15081023 (+) True irx5
XM_022672178.1 mRNA upstream 451796 14891893 ~ 14910972 (+) False rpgrip1l
XM_007228215.3 mRNA downstream 23298 15403842 ~ 15418547 (+) True LOC103040017
XM_007228221.3 mRNA downstream 55855 15436399 ~ 15449870 (+) True slc5a12
XM_007228226.3 mRNA downstream 191766 15572310 ~ 15577528 (+) False svip
XM_007228228.3 mRNA downstream 244284 15624828 ~ 15627708 (+) True fancf
XM_007228230.3 mRNA downstream 336521 15717065 ~ 15738062 (+) True LOC103044315
XR_002650242.1 other upstream 441765 14891534 ~ 14921003 (+) False rpgrip1l
TU99159 other upstream 713217 14648829 ~ 14649551 (+) True G73533
XR_002650241.1 other upstream 2464837 12871484 ~ 12897931 (+) False LOC103043719
trnar-ucg_4 other upstream 2759344 12603352 ~ 12603424 (+) True trnar-ucg_4
TU97933 other upstream 5280628 10078579 ~ 10082140 (+) True G72621
TU99974 other downstream 906132 16286676 ~ 16288329 (+) True G74169
TU100573 other downstream 3074307 18454851 ~ 18455197 (+) True G74649
TU100801 other downstream 3702272 19082816 ~ 19085556 (+) True G74832
TU101007 other downstream 4147447 19527991 ~ 19533073 (+) False LOC103044129
TU101298 other downstream 4823075 20203619 ~ 20207922 (+) True LOC103028745

Expression Profile