RNA id: XM_015603200.2


Basic Information

Item Value
RNA id XM_015603200.2
length 751
RNA type mRNA
GC content 0.56
exon number 6
gene id rps5
representative False

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 975095 ~ 982603 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAGCAGACATGCGCAGTGCGCGCCTAGCGGAGGCCCTTTCCTGTCTGAGCGAGGCGAGCAGAGAGATCGCGGACACAAGTAGAATGACGGAGTGGGAGACTGCACCAGCTGTGGCTGAGACGCCCGAGATCAAGCTGTTCGGCAAGTGGAGCACTGATGACGTTCAGATCAACGACATCTCCCTCCAGGACTACGTTGCTGTAAAGGAGAAGTACGCCAAGTACCTCCCCCACTCCGGAGGGCGCTATGCCGCCAAGCGCTTCCGTAAAGCCCAGTGCCCCATCGTGGAGCGCTTGACCAACTCCATGATGATGCACGGACGCAACAACGGCAAGAAGCTGATGACCGTGCGCATCGTGAAGCACGCCTTCGAGATCATCCACCTGCTGACCGGGGAGAACCCCCTGCAGGTTCTGGTGAACGCAATCATCAACAGTGGACCCCGTGAGGACTCCACCCGTATTGGTCGTGCTGGTACCGTCAGAAGACAGGCTGTGGACGTGTCTCCTCTTCGCAGGGTCAACCAGGCTATCTGGCTGCTGTGCACTGGCGCGAGAGAGGCCGCCTTCAGGAACATAAAGACCATTGCTGAGTGTCTGGCTGATGAGCTCATCAACGCTGCAAAGGGTTCGTCAAACTCCTACGCCATCAAGAAGAAGGACGAGCTGGAGAGAGTGGCCAAGTCCAACCGTTAAACAAACGCCTGTTTCTTtctacaaaatgcaaaaataaaagaattgaAGAAATTTCT

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0015935 small ribosomal subunit cellular_component
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95096 lncRNA downstream 60846 913078 ~ 914249 (-) True G70477
TU95073 lncRNA downstream 121490 845038 ~ 853605 (-) True G70457
TU95070 lncRNA downstream 134941 836229 ~ 840154 (-) True G70455
TU95068 lncRNA downstream 146539 826913 ~ 828556 (-) True G70454
TU95050 lncRNA downstream 193402 780327 ~ 781693 (-) False G70443
TU95109 lncRNA upstream 38154 1020735 ~ 1020992 (-) True G70489
TU95110 lncRNA upstream 50308 1032889 ~ 1035006 (-) False LOC103042850
TU95122 lncRNA upstream 105262 1087843 ~ 1088144 (-) True G70502
TU95132 lncRNA upstream 133346 1115927 ~ 1117269 (-) True G70508
TU95137 lncRNA upstream 163202 1145783 ~ 1146014 (-) True G70512
XM_022671888.1 mRNA downstream 36911 932017 ~ 938184 (-) True LOC111193040
XM_022671930.1 mRNA downstream 778812 178319 ~ 196283 (-) True LOC103044579
XM_022671898.1 mRNA upstream 5865 988446 ~ 1005877 (-) True LOC103041113
XM_022671899.1 mRNA upstream 27305 1009886 ~ 1035016 (-) True LOC103042850
XM_022671943.1 mRNA upstream 1015575 1998156 ~ 2220364 (-) True LOC103026956
XM_022671944.1 mRNA upstream 1453099 2435680 ~ 2488996 (-) True LOC103026657
XM_022671945.1 mRNA upstream 1518407 2500988 ~ 2535981 (-) True LOC103022920
TU95334 other upstream 1753287 2735868 ~ 2745072 (-) False tnip1
TU95670 other upstream 2365219 3347800 ~ 3353599 (-) True G70924
TU95798 other upstream 2786580 3769161 ~ 3807099 (-) False LOC103042226
TU96020 other upstream 3429367 4411948 ~ 4413011 (-) True G71175
TU96095 other upstream 3899589 4882170 ~ 4884488 (-) True G71235

Expression Profile