RNA id: XM_015604526.2


Basic Information

Item Value
RNA id XM_015604526.2
length 1798
RNA type mRNA
GC content 0.48
exon number 7
gene id LOC103045029
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 20192525 ~ 20206698 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctgaaaacaaacacacagttcaGAGCAGGACTAGCACACTCACAAACCTGCTGCACTGAGCTCAGCTAAGGAGTCGACCAAGGGATTTTTACTTGAAGGTAGTTTGATACAGACGCTGATACAGACACCTTTGACAGTATGTATCGTGGTCTGGTGTTGTGGGGGATATTTCTCTGGGGCCAGGTGCTCAGGTCTGAGAGTCAGGATTGTGTGAACAGGCAAGAACTGCAGAGCACTCTTCGTCAAGTCAACAAGCTGCTCTTAGCTCACGAGACTTCGTTCTTACAGAACGTACGCAGCCTCCGCAAGAAACTGAGCCTGCTACAGAGCAGCATGGCCAAACCAAGCAACAACACCACTACAGGCAAGAATAGAGCATCCTGCCCGCCCCCAGAGCTGCTAGCTAATGGCAAGATGCTTGGGAGAGTGTTTCGAGTTGGCCATGAGGTTCACTTCCTTTGCAATGCTGGTTTTGAGCTGACAGGGGCAGAGACCAGAGTGTGTCAGGATTCCCTCACCTGGAGTGGAGAGCATGCAGCCTGCAAGGCTACAGATGCTGGCATAAACAATGATGGTACTTCCTCTATGCCCACATCTCCTTCATCCTCACCCTTAATATCGACCTATGTGCGACCCTCCCGCTGTATTGAGTTCCAGGGTTCGAAACACTGCACCTGTGAGCAGGGTTACAGCATTTACAGCCAGGACAGAGGGCTGTGCACAGACATTGATGAATGTGCGCTCTCCCGTCTGACTCAGCCTGGTCGTCTTTGTCTGCACACCTGTGTGAACACGGCTGGAAGCTTCCGCTGTGAATGTCCCAGAGGGTACGctctcagcagagacagcagaAACTGCCAAGACATTGACGAGTGTGAAGGGGGTTTTCACAACTGCACAggtgagcaggtgtgtgtgaaCACTTTTGGAGGTCACCGCTGTGTGGAGGTTGAGTGTCCTCGCTTCCGCAATGCCTCCTATGTCAAAACATCACCCCAGCGCTGTGAGCGTAATCCATGCCTCGAGGGGGACAAAGCCTGCCTCCAGGCTCCAGTCTCTGTGAACTTCCACTTCATGTCAGTGGTGTCAAACATGACTGCCCCCCGAGTTCTGTTCGGAGTGTCTGCGGCTCGTGTGCTGGGGGACACACTGCGCTTCGGCCTGCTGGGAAACCGGGGAACAGCGCACTTTGCCGTTCAGCGCTCAGGCAAGCAGACCGGACAGCTACTGCTGGTGGACCCTGTTCAAGGCCCTGCCACGCTGGAAGCTGAGGTAGAGATGAGTGAACTGCAGAAGAGGACACTGCTCGGACGATACGTCACCAAGGTCACACTGTTCGTCTCCCCGTATACCTTCTGAACGGAAAGTGAGGAGGAGCTGGACTGGACAATTAAAGTGCTCAGTGCAAAAGTAATTACACCCTGAGACTTACACAAGGAAGTGGTGTTtaatacctgttttttttacccGCCTGACAGGTAACAGTCAGACAAGAGCTTCACCTGAGAAAAATCTAATTCATTCGTTTTAGAAGACCATCAAAGCattttatttccaaatatttcatatttctttaattgcaatatttcatgtctttttcaGTATCTTTGTATCTATCACAATATCTTTGTGTATTTCCACGTTTACTTTAGCCATAATTTCACAGGCTTATGCAATGGTTTATGCTCCTCTGATGAATTCACAAGAtccttatttttctttcaaatgATCTACATTTTAGGtcagtttatatttatcttttttaatgtttcaaataaacagtaattgttTATTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101400 lncRNA downstream 6038 20181150 ~ 20186487 (-) True G75232
TU101390 lncRNA downstream 34321 20153547 ~ 20158204 (-) True G75224
TU101382 lncRNA downstream 41089 20148689 ~ 20151436 (-) True G75223
XR_002650257.1 lncRNA downstream 69783 20101881 ~ 20122742 (-) False LOC107197502
TU101437 lncRNA upstream 71791 20272775 ~ 20276444 (-) True G75265
TU101415 lncRNA upstream 77492 20278476 ~ 20284642 (-) True G75243
TU101445 lncRNA upstream 100901 20301885 ~ 20302545 (-) True G75270
TU101473 lncRNA upstream 367863 20568847 ~ 20569357 (-) True G75286
TU101461 lncRNA upstream 421657 20622641 ~ 20745711 (-) True LOC103032014
XM_007244252.3 mRNA downstream 92276 20084428 ~ 20100249 (-) True hsd17b12
XM_022672295.1 mRNA downstream 111190 20074123 ~ 20081335 (-) False alkbh3
XM_022672294.1 mRNA downstream 111192 20073506 ~ 20081333 (-) False alkbh3
XM_022672308.1 mRNA upstream 42382 20243366 ~ 20253823 (-) False LOC103029688
XM_022672307.1 mRNA upstream 42382 20243366 ~ 20253823 (-) True LOC103029688
XM_007244269.3 mRNA upstream 431655 20632639 ~ 20748208 (-) False LOC103032014
XM_007244268.3 mRNA upstream 542929 20743913 ~ 20748208 (-) False LOC103032014
XM_022672310.1 mRNA upstream 639520 20840504 ~ 20863315 (-) True ankrd27
TU101364 other downstream 92275 20087418 ~ 20100250 (-) False hsd17b12
TU101358 other downstream 160498 20027162 ~ 20032027 (-) True G75207
TU101215 other downstream 326543 19859694 ~ 19865982 (-) True G75100
TU100809 other downstream 1119637 19070938 ~ 19072888 (-) True G74838
TU100745 other downstream 1252061 18939174 ~ 18940464 (-) True G74791
trnat-agu_2 other upstream 695119 20896103 ~ 20896176 (-) True trnat-agu_2
TU101746 other upstream 1069145 21270129 ~ 21273017 (-) True LOC111193105
XR_002650263.1 other upstream 2255347 22456331 ~ 22513724 (-) False LOC103024007
XR_002650267.1 other upstream 3983585 24184569 ~ 24188202 (-) True LOC111193112
TU102973 other upstream 4713314 24914298 ~ 24920365 (-) True G76377

Expression Profile