RNA id: XM_015605105.2


Basic Information

Item Value
RNA id XM_015605105.2
length 2337
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC103032021
representative True

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 18637244 ~ 18644079 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGCCATCCACACAATCTCACAGACAGTGCGAGAATTTCAGTTTGATTTTGGTGGAAGGAAAAGGGTCTGAGTTCACGCGGTAAATCTGCCTCACTGCAGGTAAAAGCACTGCGAAGCGCCACGCCAGGAGATATGGAAGGTATGGTGCAGTCCCGTTCTTTACCGATGAGGATGCGTAATTCTGTTCAGAATCAGgGCGTTAAACAGACTTTTAAGAAGAAGAAATCTAACTCTGTGAATAAGAAGTCTGTGGCTGAAACATACTGCCAGACTGTGACTATGCAGATTAAAACAGAGGACATTCCTGCTGAAGGCCTGACCATAAGCAACCATAGCCAAAATGGCACTGGACCATACTGTGACCAGCCAACTCTGCAATGTCCACAGACTCCAAACGCAACATTAGtGTATTCTACTGAACTTGGAGATCCCCCTTTGCTTCGACAGCCACAGCCCACCACTATGACTGGAATTCAGCAAATCATTGAATGTTTTCGCTCagGTACAGTTCGGGCTAAACTCACGCTCCTGAAAGAGGTGGACACCATTTTTGAGTGTCAACTTTGCAGAAGTCTTTTCCGTGGTATTCCTAATTTGCTTGAACACAGGCAGTCCTACTGCTTGTCCAGGCATCCAGAACCAGAAGACCCATCTCAAGTAATGAAAGACCTACTAGAGGCTGTATTCCCTCAAACAGATTGTCAGGAATCGCCTCTTGAAGTCATTGATGAACCTGTGTATAGGGACCAGACTCCGGCACCAGTTCCTGATTCCCAGCAGCAAAACCCTACGTTATGGAAACTGTGTGGCCGTGAACCTGTCGTGGTCCTCAGAAGGGTTCATCAGCTGCAGCATACTTTATCTGTTACAGTAGATTCAGTTTCCCAGGAAAGAGGGGGCCGTGAGCAAATTGACAGGGAGGCTAATTGTGGAGAGGGTTCTCTCTCACCTGCACAGGACACAATGTCATCACCAAAAAATGATCTAGAATTAAACAGTACGTTTCAATCAAATGTCAAAAAGCAGCGTTACTCCACCCGTAAGGCTGTAGGATTGAAAGATGGAGAAAAAGATAGCAGTAGAGTGAACAGGAGAAAGATCATTCGGCAACAAACTCCGGTGATTGAACGTAATGTCAGAGCATTACGAAAAGACACTGCGAAGAAAGCCAAATCCATGCTTGGACCTGAGAGTATGAagggagaaagaggagaagcCAGTAAGAAGGAGCACCTGTCTGCTGGCAAAATGTGTTCTGTAGGCCAAAGGTCTCCTGACAAGGAACCAAAAGCTCATGGCAACTCTAATGAGGTACAGTGTAACAGTTCGCAAGATGGCACCACACCTGCATCTACTGCACAGCCTGACCAACACCTCTCCACTTCGACTACACCCGTTCCTCAGAAACAACTAAATTCAAAGCCTAATACAGCGGATGTTTCCCCCAAAGGACAGCGTGTCATCCCCTGGATGAAGGACTTGTTTTACTGCGGCCTGTGCAAGTGTAAGTACAGCTCCCAGGTGCTGCTGATGAAACACATGAGCATCGCCCACAAGTTCCTACTGTTGGGAAACAGCCCTGCAGCGAGCCGCACCCCCCCTTCAAGGggagcaaaaacaaaagttaaACCTGAAGATAAGGCTTTTGTGAGGGTCTACTGTTGGTTTTGTGGAAAGCCCTTCTTTACAAAGAAGGCAGTGCGCCGTCACTGTCACAGAGACCACAGACAAAAACTGCAGGAGATTAATGTGCTTTTAAAGCAAGACACAGGCAATAGTCTTGTCCGTGAGCTGCAATCCTTGGAAAGTGGTTTTGTTGCCAGACACACACCACCAGCACCTTCGCTCCAAGCAAGATAGATAGCCTAAGCAGCCTTCCACAGTACTAAACTCAGCTAACAGATGTAGTGTGAACGGTGAagtgaagaggaaaaaaaaaaaaacaaacaaaaaaaaacacaacagtgactCTGTCTATGTGAAGATGAAGGTTATACGAATTATAGAAATGATTCTTTAAAAAAGGGcagtgtcaattttttttttataatttctagTAATTCAACATGTTACAGATATTTGTAAatgcttacatttttattacagttacatTTTTGTGGTTGTTgtgattgttgttgtttttgatgataaatattagtaaaaacattttttatcctttttggAAAACAAGTACGTACTTCCATAGCATATTTAGCATATGGATTCTTGCCCAAGGTTTATTGGTGCGGCCTTTGTAATACTTAAGCTGTTTGAAGTTATTGCTAATACGAGTTATGTCTTTAAGGAGAAATAAAACTTGTCTTGTTTCATTATCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU100662 lncRNA upstream 9216 18627649 ~ 18628028 (+) True G74714
TU100608 lncRNA upstream 10834 18625071 ~ 18626410 (+) True G74672
TU100600 lncRNA upstream 103114 18533808 ~ 18534130 (+) True G74668
TU100586 lncRNA upstream 157899 18478129 ~ 18479345 (+) False LOC103029914
TU100578 lncRNA upstream 174608 18461444 ~ 18462636 (+) True G74654
XR_002650255.1 lncRNA downstream 58642 18702721 ~ 18703887 (+) True LOC111193102
TU100720 lncRNA downstream 313559 18957638 ~ 18970866 (+) True G74770
TU100774 lncRNA downstream 348599 18992678 ~ 18994863 (+) True G74810
TU100776 lncRNA downstream 348709 18992788 ~ 18994863 (+) False G74810
TU100800 lncRNA downstream 438233 19082312 ~ 19082521 (+) True G74831
XM_007246625.3 mRNA upstream 2297 18632303 ~ 18634947 (+) True LOC103027288
XM_022672238.1 mRNA upstream 22123 18577789 ~ 18615121 (+) True LOC103026996
XM_022672239.1 mRNA upstream 61877 18535874 ~ 18575367 (+) True LOC103026700
XM_007246542.3 mRNA upstream 113069 18514747 ~ 18524175 (+) False LOC103030871
XM_007246541.3 mRNA upstream 113069 18514748 ~ 18524175 (+) True LOC103030871
XM_007246546.3 mRNA downstream 9197 18653276 ~ 18668460 (+) True LOC103032349
XM_022672241.1 mRNA downstream 28322 18672401 ~ 18838757 (+) True LOC103033497
XM_015605137.2 mRNA downstream 249148 18893227 ~ 18937127 (+) True pot1
XM_015605138.2 mRNA downstream 249148 18893227 ~ 18937127 (+) False pot1
XM_007246549.3 mRNA downstream 295016 18939095 ~ 18950348 (+) True gpr37
TU100573 other upstream 182047 18454851 ~ 18455197 (+) True G74649
TU99974 other upstream 2348915 16286676 ~ 16288329 (+) True G74169
XR_002650242.1 other upstream 3716241 14891534 ~ 14921003 (+) False rpgrip1l
TU99159 other upstream 3987693 14648829 ~ 14649551 (+) True G73533
XR_002650241.1 other upstream 5739313 12871484 ~ 12897931 (+) False LOC103043719
TU100801 other downstream 438737 19082816 ~ 19085556 (+) True G74832
TU101007 other downstream 883912 19527991 ~ 19533073 (+) False LOC103044129
TU101298 other downstream 1559540 20203619 ~ 20207922 (+) True LOC103028745
TU101630 other downstream 2379177 21023256 ~ 21025128 (+) True G75383
TU101641 other downstream 2444543 21088622 ~ 21096906 (+) True G75391

Expression Profile